- Raise requires-python to >=3.13 across all projects/libs; set ruff target to py313
- Fix bare excepts, unused variables/imports, Optional→union syntax, and import ordering
- Refactor chatbot MCP server to async subprocess with health checks and graceful shutdown
- Simplify file-enrichment prod Dockerfile to use uv sync with UV_PROJECT_ENVIRONMENT
- Fix module_loader to use fully qualified analyzer module name
- Make YARA _analyze_yara async and fix rule_manager access in workflow
- Enable LiteLLM healthcheck and add agents→litellm dependency
- Add PE analyzer tests with PyInstaller fixture;
- Update PDF tests for nested metadata
- Suppress third-party DeprecationWarnings, use async-lru for LLM status cache
- Add PHOENIX_ENABLED validation to nemesis-ctl.sh; remove debug pprint in agents
- Add Claude Code managing-packages skill, update CLAUDE.md guidance
Lee Chagolla-Christensen