128 Commits

Author SHA1 Message Date
Drew Cain 16869867da fix(core): gate hybrid FTS relaxation with the service's eligibility rules
Addresses Codex review on #994: the hybrid FTS branch opted into
OR-relaxation for every query shape, but SearchService's relaxed FTS
path deliberately rejects short queries and numeric identifiers because
OR-relaxing them over-broadens — and in hybrid the relaxed FTS-only rows
normalize to 1.0 and can outrank the vector result the user wanted
(e.g. "SPEC 16", "root note 1", "New Feature").

relaxed_query_words now enforces the same eligibility as
SearchService._is_relaxed_fts_fallback_eligible: tokenize on
[A-Za-z0-9]+ and return None when there are fewer than three tokens or
any token is a pure digit (in addition to the existing quoted/boolean
guards). Both the SQLite and Postgres relaxed retries route through this
helper, so the hybrid path now relaxes exactly the query shapes the
service does.

Tests updated for the tightened eligibility (short + numeric queries no
longer relax); SQLite + Postgres relaxation suites green, full
repository/search-service/link-resolver suite green (442 passed), ty
clean.

Signed-off-by: Drew Cain <groksrc@gmail.com>
2026-06-13 14:50:15 -05:00
Drew Cain 18da6194f9 fix(core): Postgres parity for FTS punctuation/relaxation (CI green)
CI Postgres shard caught two issues invisible to the local SQLite suite:

1. Postgres _prepare_single_term regression: the new edge-punctuation
   strip ran after special-character cleaning, so an all-special-char
   term ("()&!:") collapsed to empty and skipped the existing
   NOSPECIALCHARS:* guard, emitting a malformed ":*". Folded the strip
   into the word handlers so every guard survives, and added a
   single-word empty guard.

2. Backend-specific test assumptions. Four tests in
   test_search_repository.py (run under both backends via the
   search_repository fixture) asserted SQLite FTS5 syntax and
   SQLite-only strict-miss behavior. Postgres to_tsquery('english', ...)
   auto-strips stopwords, so "When did Melanie paint a sunrise?" already
   matches under strict AND. Made the four tests backend-aware via the
   existing is_postgres_backend() helper, and switched the relaxation
   integration test to a query with a word absent from the doc
   ("hiking") so the strict miss holds on both backends.

Reproduced and fixed against real Postgres (testcontainers): full
search test surface green on both backends (53 passed Postgres,
2968 SQLite), ruff + ty clean.

Signed-off-by: Drew Cain <groksrc@gmail.com>
2026-06-13 14:50:15 -05:00
Drew Cain a6d0784335 fix(core): repair FTS half of hybrid search for natural-language queries
Hybrid search was silently running vector-only on natural-language
queries — the FTS branch contributed zero candidates. Two causes in the
SQLite (and parallel Postgres) FTS query preparation:

1. Sentence punctuation forced phrase matching. A question like
   "When did Melanie paint a sunrise?" reached FTS5 as the exact phrase
   '"When did Melanie paint a sunrise?"*', which matches no document.
   The FTS5 tokenizer ignores this punctuation in the index, so
   stripping it from word edges loses nothing — but leaving it disabled
   the entire FTS contribution. _prepare_single_term now strips
   ?!.,;: from word edges of multi-word queries (interior characters —
   hyphens, slashes in permalinks/paths — untouched).

2. No relaxation when strict all-terms-AND matched nothing. Questions
   rarely have every word in one document, so even after (1) the
   strict AND returned zero rows. The hybrid path now retries once with
   an OR-joined, stopword-filtered, content-term query when the strict
   query is empty. bm25/ts_rank still rank multi-term matches first, and
   fusion with the vector branch keeps relaxed lexical candidates from
   dominating precision.

The relaxation is gated behind a new allow_relaxed=False parameter on
SearchRepositoryBase.search; only _search_hybrid opts in. Strict FTS
behavior (search_type=text, title, permalink, link resolution) is
unchanged — the service layer keeps its own conservative fallback.
No config flag, default-safe.

Discovered via the benchmark harness: two different fusion algorithms
produced byte-identical rankings across 1,986 queries (impossible with
two live sources), and instrumentation confirmed fts=0 on 40/40
sampled LoCoMo queries.

Benchmark impact (corrected LoCoMo, 1,986 queries, same index,
retrieval metrics — every category improves, no regression):
  recall@5  0.745 -> 0.823  (+7.9)
  MRR       0.618 -> 0.718  (+10.0)
  headline  r5 0.734 -> 0.801, MRR 0.621 -> 0.706
Largest gains on open_domain (+0.10 r5) and adversarial (+0.12 r5);
smallest on temporal (+0.003 r5 / +0.02 MRR).

Tests: punctuation no longer phrase-quotes; relaxation builds the
expected OR query and respects boolean/quoted/short-query intent; the
hybrid opt-in surfaces a partial-overlap document while the default
strict path still returns empty. Parallel coverage for Postgres. Full
SQLite unit suite green (2968 passed); ty + ruff clean.

Signed-off-by: Drew Cain <groksrc@gmail.com>
2026-06-13 14:50:15 -05:00
phernandez 253e240d68 fix(core): use (type, id) keys in vector search hydration to prevent id collisions
Root cause: entity, observation, and relation rows in search_index carry
ids from independent auto-increment sequences, so rows of different types
routinely share the same numeric id (guaranteed in young databases).
_search_vector_only parsed each vector hit's chunk_key (e.g. 'entity:4:0')
but discarded the type, and _fetch_search_index_rows_by_ids keyed its
result dict by bare row.id with no type discrimination. Whichever row the
database returned last clobbered the other in the dict; the clobbered hit
then hydrated against the wrong row or found None and was silently
dropped from results. The FTS-filter branch already guarded this with
(id, type) tuples, but the primary vector lookup path and the hybrid
fusion maps missed the same treatment.

Fix: introduce a SearchIndexKey = tuple[str, int] alias and key every map
in the vector/hybrid retrieval path by (type, id) — the similarity and
chunk maps in _search_vector_only, the _fetch_search_index_rows_by_ids
result, the FTS-filter allowed keys, and the rows/fts/vec/fused score
maps in _search_hybrid. The SQL stays unchanged; bare ids are deduped
before the IN query and rows are discriminated by row.type when building
dict keys.

Tests: end-to-end SQLite regression test indexes an entity row and a
relation row sharing id 7, syncs vectors for both, and asserts vector
search returns both rows (and that the entity survives a
search_item_types filter); a hybrid fusion unit test asserts an entity
and relation sharing id 1 stay distinct with single-source scores. Both
fail without the fix. Existing mocked vector tests updated for tuple keys.

Fixes #982

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>
Signed-off-by: phernandez <paul@basicmachines.co>
2026-06-12 09:03:04 -05:00
phernandez 85c701b8c2 fix(sync): serialize in-memory SQLite sessions so concurrent rollbacks cannot destroy writes
Root cause of the test_sync_entity_circular_relations CI failure (#940,
len(entity_b.outgoing_relations) == 0): the in-memory SQLite URL
(sqlite+aiosqlite://) falls back to SQLAlchemy's StaticPool, which hands the
same DBAPI connection to every concurrently checked-out session. Concurrent
asyncio tasks therefore share one SQLite transaction scope. A rollback issued
through one session — scoped_session's exception handler, or the pool's
reset-on-return at connection checkin (~40 real ROLLBACKs per sync, measured)
— also rolls back any other task's executed-but-uncommitted statements.

During batch indexing, per-file tasks run concurrently (asyncio.gather bounded
by index_entity_max_concurrent). If a sibling session's checkin ROLLBACK lands
between one task's relation INSERT and its COMMIT, the relation row is silently
erased: no error is raised, the sync reports success. The final sync-level
resolve_relations() pass cannot heal this because it only re-queries rows with
to_id IS NULL — the destroyed INSERT leaves no row at all.

Fix: give MEMORY-type engines a single-connection AsyncAdaptedQueuePool
(pool_size=1, max_overflow=0). The lone connection keeps the in-memory
database alive for the engine's lifetime (the reason StaticPool was used),
while the blocking checkout serializes sessions at transaction granularity,
restoring the isolation the repositories assume. File-based SQLite and
Postgres engines are unchanged; production never uses MEMORY engines.

The regression test pins the invariant directly: a session that rolls back in
one task must never destroy another task's uncommitted writes. It fails
deterministically against StaticPool and passes with the serialized pool.

tests/repository/test_entity_repository.py held a scoped session open while
calling a repository method that opens its own session — tolerated on a shared
connection, a deadlock under a serialized pool — so the nested call moved out
of the session block.

Refs #940

Co-Authored-By: Claude Fable 5 <noreply@anthropic.com>
Signed-off-by: phernandez <paul@basicmachines.co>
2026-06-12 09:03:00 -05:00
Paul Hernandez 93ed34001b fix(core): disambiguate truncated observation permalinks to prevent index collisions (#931)
Signed-off-by: phernandez <paul@basicmachines.co>
Co-authored-by: Claude Opus 4.8 (1M context) <noreply@anthropic.com>
2026-06-09 20:20:46 -05:00
Paul Hernandez 4fe6fe09c8 feat(core): add observation category filter to search (#908)
Signed-off-by: phernandez <paul@basicmachines.co>
Co-authored-by: Claude Opus 4.8 (1M context) <noreply@anthropic.com>
2026-06-07 19:57:19 -05:00
Paul Hernandez 8acdb49a41 fix(core): reuse a single embedding provider per process (#903)
Signed-off-by: phernandez <paul@basicmachines.co>
Co-authored-by: Claude Opus 4.8 (1M context) <noreply@anthropic.com>
2026-06-07 19:14:07 -05:00
Paul Hernandez 5b034f081d fix(core): self-heal corrupt FastEmbed model cache (#900)
Signed-off-by: phernandez <paul@basicmachines.co>
Co-authored-by: Claude Opus 4.8 (1M context) <noreply@anthropic.com>
2026-06-07 17:37:30 -05:00
Sourish Chakraborty f916662ff3 fix(core): allow cross-project context traversal 2026-06-06 21:43:21 -05:00
tk f6565b9d23 fix(core): L2-normalize FastEmbed vectors (#843)
L2-normalizes FastEmbed output vectors at the provider boundary so SQLite vector scoring keeps its unit-vector contract for custom FastEmbed models such as multilingual MiniLM variants.

Zero vectors are preserved as-is to avoid division errors, and the provider tests cover both non-unit vectors and zero-vector behavior.

Verification:
- uv run pytest tests/repository/test_fastembed_provider.py -q
- uv run ruff check src/basic_memory/repository/fastembed_provider.py tests/repository/test_fastembed_provider.py
- uv run ruff format --check src/basic_memory/repository/fastembed_provider.py tests/repository/test_fastembed_provider.py

Co-authored-by: Claude Sonnet 4.6 <noreply@anthropic.com>
Signed-off-by: tk-pkm111 <133480534+tk-pkm111@users.noreply.github.com>
Signed-off-by: phernandez <paul@basicmachines.co>
2026-06-06 17:15:19 -05:00
Aarish Alam b6e8c636ce feat(core): add LiteLLM embedding provider (#809)
Adds LiteLLM as a semantic embedding provider, including provider configuration, vector normalization, live-provider evaluation tooling, and documentation for OpenAI, Cohere, Azure Foundry, Azure OpenAI, and NVIDIA NIM-style cases.

Maintainer follow-up on this PR added provider hardening, asymmetric document/query embedding support, dimension-forwarding controls, SQLite/Postgres vector invalidation coverage, and the repeatable live LiteLLM harness.

Verification:
- Full base-repo Tests workflow passed for 3d4e092ceb: https://github.com/basicmachines-co/basic-memory/actions/runs/27072071785
- Live LiteLLM harness passed locally for OpenAI, Cohere, and Azure Foundry.

Co-authored-by: Aarish Alam <arishalam121@gmail.com>
Co-authored-by: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
Signed-off-by: RheagalFire <arishalam121@gmail.com>
Signed-off-by: phernandez <paul@basicmachines.co>
2026-06-06 17:13:09 -05:00
Paul Hernandez 415c2b3d6e feat(cli): add orphan entity command (#816)
Signed-off-by: phernandez <paul@basicmachines.co>
2026-05-11 12:13:14 -05:00
Paul Hernandez 26381aeed1 fix(mcp): use lightweight graph hydration lookup (#806)
Signed-off-by: phernandez <paul@basicmachines.co>
2026-05-08 10:07:29 -05:00
Paul Hernandez 09a4b09436 feat(api): include search result totals (#791)
Signed-off-by: phernandez <paul@basicmachines.co>
2026-05-04 14:57:04 -05:00
Paul Hernandez 2bfb9c76df fix(core): degrade gracefully when sqlite-vec cannot load on init (#774)
Signed-off-by: phernandez <paul@basicmachines.co>
2026-04-29 08:57:31 -05:00
Paul Hernandez 1b39062ecd refactor(core): rip telemetry wrappers, use logfire directly (#754)
Signed-off-by: phernandez <paul@basicmachines.co>
Co-authored-by: Claude Opus 4.7 (1M context) <noreply@anthropic.com>
2026-04-17 13:58:19 -05:00
Paul Hernandez c4cf0aff1e perf(sync): speed up single markdown file indexing (#751)
Signed-off-by: phernandez <paul@basicmachines.co>
2026-04-17 07:08:21 -05:00
Drew Cain bf9a6b4a75 fix(core): resolve FastEmbed cache under data dir instead of /tmp (#743)
Signed-off-by: Drew Cain <groksrc@gmail.com>
Co-authored-by: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
2026-04-15 22:55:00 -05:00
Paul Hernandez 052545b661 chore(core): make ty the default typechecker (#736)
Signed-off-by: phernandez <paul@basicmachines.co>
2026-04-13 10:34:01 -05:00
Paul Hernandez 7945c1e2f7 perf(core): speed up vector sync and tune fastembed defaults (#731)
Signed-off-by: phernandez <paul@basicmachines.co>
2026-04-09 00:20:12 -05:00
Paul Hernandez 540da418b3 perf(sync): batch file indexing in core (#726)
Signed-off-by: phernandez <paul@basicmachines.co>
2026-04-08 01:21:49 -05:00
Paul Hernandez 3e40cb9657 fix(core): remove runtime ALTER TABLE from vector init (#728)
Signed-off-by: phernandez <paul@basicmachines.co>
2026-04-08 00:39:37 -05:00
Paul Hernandez 8c81d3ce17 perf(core): reduce postgres vector sync work (#723)
Signed-off-by: phernandez <paul@basicmachines.co>
2026-04-07 19:00:19 -05:00
Drew Cain b35d594ef0 fix(core): preserve external_id during entity upsert on re-index (#724)
Signed-off-by: Drew Cain <groksrc@gmail.com>
Co-authored-by: Claude Opus 4.6 (1M context) <noreply@anthropic.com>
2026-04-07 10:26:10 -05:00
Paul Hernandez 88c8f18200 feat(core): add note_content tenant schema primitive (#719)
Signed-off-by: phernandez <paul@basicmachines.co>
2026-04-04 22:06:37 -05:00
Paul Hernandez 30a89357cb fix(core): handle SQLite and Windows semantic regressions (#655)
Signed-off-by: phernandez <paul@basicmachines.co>
2026-03-09 22:18:17 -05:00
phernandez d15f6a8427 Add batched vector sync orchestration across repositories 2026-03-03 16:36:06 -06:00
phernandez b8a3a14ad2 Add semantic query timing and FastEmbed parallel guardrails
Signed-off-by: phernandez <paul@basicmachines.co>
2026-03-03 14:04:03 -06:00
phernandez 9b199c6dcb fix: add FastEmbed runtime tuning knobs and provider caching
Add configurable cache_dir, threads, and parallel settings for FastEmbed
to support cloud deployments where defaults fail. Cache embedding providers
at the process level to avoid re-creating heavy ONNX model instances.

- Add semantic_embedding_cache_dir, semantic_embedding_threads, and
  semantic_embedding_parallel config fields
- Thread-safe provider cache with double-checked locking in factory
- Forward runtime knobs through to TextEmbedding and embed() calls
- Fix if/elif chain in factory for correct error handling

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
Signed-off-by: phernandez <paul@basicmachines.co>
2026-03-03 10:26:47 -06:00
Paul Hernandez e97eafa55a fix: build_context related_results schema validation failure (#631)
Signed-off-by: phernandez <paul@basicmachines.co>
Co-authored-by: Claude Opus 4.6 <noreply@anthropic.com>
2026-02-27 12:30:44 -06:00
phernandez 9331126ba1 feat: improve content hit rate in search results (#609)
Three changes to surface more answer text in search results:

- Populate matched_chunk_text for FTS-only hybrid results from content_snippet,
  preventing fallback to truncated content when vector search has no match
- Increase TOP_CHUNKS_PER_RESULT from 3 to 5, catching answers in deeper chunks
  for large notes (~2700 → ~4500 chars of matched context)
- Increase CONTENT_DISPLAY_LIMIT from 2000 to 4000, doubling the safety-net
  content truncation for results without matched_chunk

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
Signed-off-by: phernandez <paul@basicmachines.co>
2026-02-26 11:55:38 -06:00
phernandez 3bbb44af0b feat: add --json output to CLI commands for scripting and CI
Add machine-readable JSON output to five CLI commands:
- `bm status --json` — sync report
- `bm project list --json` — structured project list
- `bm schema validate --json` — validation report
- `bm schema infer --json` — inference report
- `bm schema diff --json` — drift report

Refactored `run_status()` to return data instead of printing directly,
improving testability. Follows the established `bm project info --json`
pattern using `print()` for clean JSON (no Rich markup).

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
Signed-off-by: phernandez <paul@basicmachines.co>
2026-02-26 10:33:00 -06:00
phernandez f9b2a075a9 feat: return richer content context in search results (#609)
Two strategies to improve content hit rate when the right document is found:

1. Small notes (<=2000 chars): return full content_snippet as matched_chunk
   so the answer is always present for correctly-retrieved small notes
2. Large notes: return top-3 chunks by similarity joined with \n---\n
   instead of just the single best chunk (~2700 chars vs ~900 chars)

Also raises CONTENT_DISPLAY_LIMIT from 250 to 2000 for richer FTS results.

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
Signed-off-by: phernandez <paul@basicmachines.co>
2026-02-26 08:36:54 -06:00
phernandez f5a0e942b0 fix: replace RRF with score-based fusion in hybrid search (#577)
RRF compressed all fused scores to ~0.016, destroying ranking differentiation.
The new formula `max(vec, fts) + FUSION_BONUS * min(vec, fts)` preserves
dominant signals and rewards dual-source agreement.

Changes:
- Remove RRF_K constant; add FUSION_BONUS (0.3) and FTS_GATE_THRESHOLD (0.0)
- Use raw vector similarity scores instead of re-normalizing by vec_max
- Zero-score results now produce zero fused score (no 0.1 weight floor)
- Rename test_hybrid_rrf.py → test_hybrid_fusion.py with updated assertions
- Update docs and docstrings to reflect score-based fusion

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
Signed-off-by: phernandez <paul@basicmachines.co>
2026-02-25 22:53:00 -06:00
phernandez b6369d3d14 fix: cap sqlite-vec knn k parameter at 4096 limit
sqlite-vec enforces k <= 4096 for nearest-neighbor queries. Projects with
>4096 vector chunks would crash all vector/hybrid search because
candidate_limit = max(100, (limit + offset) * 10) exceeded this hard limit.

Clamp the knn k in _run_vector_query while keeping the outer SQL LIMIT
unclamped. Only affects SQLite — pgvector has no such constraint.

Fixes #604

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
Signed-off-by: phernandez <paul@basicmachines.co>
2026-02-24 23:23:15 -06:00
phernandez 054178d155 fix: parameterize SQL queries in search repository type filters
Replace f-string interpolation with parameterized queries for note_types,
search_item_types, and metadata filter paths to prevent SQL injection.

Fixes #591

Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
Signed-off-by: phernandez <paul@basicmachines.co>
2026-02-23 22:16:46 -06:00
Paul Hernandez 0f3889fdd0 fix: Return matched chunk text in search results (#601)
Signed-off-by: phernandez <paul@basicmachines.co>
Co-authored-by: Claude Opus 4.6 <noreply@anthropic.com>
2026-02-22 21:01:20 -06:00
Paul Hernandez c44291830c chore: rename entity_type to note_type (#600)
Signed-off-by: phernandez <paul@basicmachines.co>
Co-authored-by: Claude Opus 4.6 <noreply@anthropic.com>
2026-02-22 20:28:57 -06:00
Paul Hernandez b86dd6fb53 feat: Fix bm CLI runtime defects and audit regressions (#596)
Signed-off-by: phernandez <paul@basicmachines.co>
2026-02-20 22:59:29 -06:00
Drew Cain 9c9ff2931d fix: backend-specific distance-to-similarity conversion (#593)
Signed-off-by: Drew Cain <groksrc@gmail.com>
Signed-off-by: phernandez <paul@basicmachines.co>
Co-authored-by: Claude Opus 4.6 <noreply@anthropic.com>
Co-authored-by: Paul Hernandez <60959+phernandez@users.noreply.github.com>
Co-authored-by: phernandez <paul@basicmachines.co>
2026-02-20 20:15:46 -06:00
Paul Hernandez edb7991ccf fix: strip NUL bytes from content before PostgreSQL search indexing (#592)
Signed-off-by: phernandez <paul@basicmachines.co>
Co-authored-by: Claude Opus 4.6 <noreply@anthropic.com>
2026-02-20 18:11:04 -06:00
Paul Hernandez 306e562281 chore: Make semantic deps default, auto-backfill embeddings, and default search to semantic (#586)
Signed-off-by: phernandez <paul@basicmachines.co>
2026-02-19 18:31:15 -06:00
Paul Hernandez 55d675e278 feat: min_similarity override, cloud promo improvements (#570)
Signed-off-by: phernandez <paul@basicmachines.co>
Co-authored-by: Claude Opus 4.6 <noreply@anthropic.com>
2026-02-16 16:44:02 -06:00
Paul Hernandez 1428d18de1 fix: make semantic search dependencies optional extras (#566)
Signed-off-by: phernandez <paul@basicmachines.co>
Co-authored-by: Claude Opus 4.6 <noreply@anthropic.com>
2026-02-12 21:46:26 -06:00
Paul Hernandez 8df88e4d02 feat: add basic-memory watch CLI command (#559)
Signed-off-by: phernandez <paul@basicmachines.co>
Co-authored-by: Claude Opus 4.6 <noreply@anthropic.com>
2026-02-12 20:10:09 -06:00
Paul Hernandez 07778790d3 feat: add semantic vector search for SQLite and Postgres (#550)
Signed-off-by: phernandez <paul@basicmachines.co>
Signed-off-by: bm-clawd <clawd@basicmemory.com>
Co-authored-by: bm-clawd <clawd@basicmemory.com>
Co-authored-by: Claude Opus 4.6 <noreply@anthropic.com>
2026-02-12 15:44:47 -06:00
Paul Hernandez 8072449a78 chore: Add fast feedback loop tooling (#538)
Signed-off-by: phernandez <paul@basicmachines.co>
2026-02-01 23:04:59 -06:00
Paul Hernandez 009e84926d fix: stabilize metadata filters on postgres (#536)
Signed-off-by: phernandez <paul@basicmachines.co>
2026-01-31 22:31:00 -06:00
phernandez 8838571509 Add metadata filter tests and fix fast write external_id
Signed-off-by: phernandez <paul@basicmachines.co>
2026-01-31 15:27:05 -06:00