Fixes#452 - Imported conversations not fully indexed
Files with UTF-8 BOM (Byte Order Mark) at the start would fail frontmatter
detection, causing:
- Title to fall back to filename instead of frontmatter value
- Permalink to be null in the database
Added strip_bom() helper function and updated all frontmatter-related
functions to strip BOM before processing:
- has_frontmatter()
- parse_frontmatter()
- remove_frontmatter()
- EntityParser.parse_markdown_content()
Added comprehensive tests for BOM handling with various scenarios.
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Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
Signed-off-by: phernandez <paul@basicmachines.co>
The API Pydantic schema had a MaxLen(1000) constraint on observation
content while the database uses SQLAlchemy's Text type (unlimited).
This mismatch caused validation errors when observations exceeded
1000 characters (e.g., JSON schemas with 1458+ chars).
Removed the MaxLen constraint to match the DB schema. Retained:
- BeforeValidator(str.strip) for whitespace cleaning
- MinLen(1) to ensure non-empty content
Added comprehensive tests to verify:
- Long content (10K+ chars) is accepted
- Very long content (50K+ chars) is accepted
- Empty/whitespace-only content is still rejected
- Whitespace stripping still works
Fixes#385🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
Signed-off-by: phernandez <paul@basicmachines.co>
When a file exists in the database but is missing from the filesystem,
the sync worker now treats this as a deletion instead of crashing.
The sync_file() method catches FileNotFoundError specifically and calls
handle_delete() to clean up the orphaned database record. This prevents
the sync from failing on database/filesystem inconsistencies that can
occur due to race conditions, manual file deletions, or cloud storage
caching issues.
Includes a test to verify the graceful handling behavior.
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Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
Signed-off-by: phernandez <paul@basicmachines.co>
Use database-retrieved project names (new_project.name, old_project.name)
instead of input parameters (project_data.name, name) in v1 API response
messages to ensure consistent project name casing.
The v2 API already did this correctly. This fixes issue #450 where project
names would display with different casing between add and remove operations.
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Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
Signed-off-by: phernandez <paul@basicmachines.co>
Suppress DeprecationWarning from aiosqlite and LogfireNotConfiguredWarning
that were cluttering CLI output.
The key fix is applying warnings.filterwarnings("ignore") AFTER all imports
in main.py, because authlib (imported via cloud commands) adds a
DeprecationWarning filter that overrides earlier suppressions.
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Co-Authored-By: Claude <noreply@anthropic.com>
Signed-off-by: phernandez <paul@basicmachines.co>
Remove loguru's default handler at the very start of cli/app.py,
before any other imports. This prevents module-level code (like
TemplateLoader.__init__) from logging to stdout during import.
The import chain cli/commands/project.py -> mcp/async_client.py ->
api/app.py -> api/routers/prompt_router.py -> api/template_loader.py
triggers TemplateLoader() instantiation at DEBUG level before
init_cli_logging() can remove the default handler.
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Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
Signed-off-by: phernandez <paul@basicmachines.co>
Denormalizes project_id onto Relation and Observation tables to enable
efficient project-scoped queries without joins. Migration backfills
from associated entity and adds pg_trgm extension with GIN indexes
for fuzzy link resolution on PostgreSQL.
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Co-Authored-By: Claude <noreply@anthropic.com>
Signed-off-by: phernandez <paul@basicmachines.co>
Add add_all_ignore_duplicates() method to RelationRepository for bulk
inserting relations with ON CONFLICT DO NOTHING. This handles cases
where the same [[wiki link]] appears multiple times in a document,
silently ignoring duplicates based on the (from_id, to_name, relation_type)
unique constraint.
Works with both SQLite and PostgreSQL dialects.
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Co-Authored-By: Claude <noreply@anthropic.com>
Signed-off-by: phernandez <paul@basicmachines.co>
Add optimized repository methods for resolve_permalink() that skip
eager loading of observations and relations:
- permalink_exists(): Check existence without loading entity
- get_file_path_for_permalink(): Get only file_path column
- get_permalink_for_file_path(): Get only permalink column
- get_all_permalinks(): Get all permalinks as strings
- get_permalink_to_file_path_map(): Bulk lookup mapping
- get_file_path_to_permalink_map(): Reverse mapping
Updated entity_service.resolve_permalink() to use these lightweight
methods instead of loading full entities with all relationships.
Also added logfire instrumentation to markdown utils.
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Co-Authored-By: Claude <noreply@anthropic.com>
Signed-off-by: phernandez <paul@basicmachines.co>
1. Hashtag detection now checks for standalone words starting with #
instead of just checking if # appears anywhere in content.
This prevents HTML color codes like #4285F4 from being
interpreted as hashtags.
2. Observation permalinks now truncate content to 200 chars
to stay under PostgreSQL's btree index limit of 2704 bytes.
Added tests for both fixes.
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Large documents (like ~1MB conversation imports) exceed Postgres's 8KB
index row limit, causing ProgramLimitExceededError. Truncate content_stems
to 6000 characters (with headroom for other columns) before indexing.
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Co-Authored-By: Claude <noreply@anthropic.com>
Signed-off-by: phernandez <paul@basicmachines.co>
phernandez