The previous backfill trigger relied on Alembic revision tracking, but
alembic_version only stores the head revision — intermediate revisions
(like the backfill trigger) are invisible after a multi-step upgrade or
fresh DB creation.
Three changes fix this:
1. Replace Alembic revision check with a simple "entities exist but
embeddings are empty" check that works regardless of migration path
2. Generate embeddings during sync — after FTS indexing, batch-embed all
synced entities at the end of the sync operation
3. Add background backfill at MCP startup for the upgrade path (entities
already exist, no embeddings) without blocking server readiness
Also adds clear startup logging for semantic embedding status so issues
are easy to spot in the logs.
📋 Covers: fresh DB, upgrade from pre-embedding version, db reset,
interrupted backfill
Signed-off-by: Pedro Hernandez <pedro@basicmachines.co>
Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
Signed-off-by: phernandez <paul@basicmachines.co>
- Prompts (search, continue_conversation) now call MCP tools directly
instead of going through API endpoints, matching the recent_activity
pattern and fixing #526 where prompts returned empty results
- sync_file catches SemanticDependenciesMissingError separately so
entities are still returned successfully when vector embedding fails,
with a clear warning instead of silent failure (#578)
- `bm status` and `bm doctor` default to local routing since they scan
the local filesystem — cloud routing returned Docker-internal paths
Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
Signed-off-by: phernandez <paul@basicmachines.co>
Cloud projects with bisync had a split-brain problem: `path` held a cloud
slug while the actual local directory lived in `local_sync_path`. This caused
`bm status` and file sync to fail for bisync'd cloud projects.
Changes:
- Config migration promotes `local_sync_path` → `path` for entries where
`path` is a non-absolute cloud slug
- `ensure_project_paths_exists` skips cloud-only projects with slug paths
- `initialize_file_sync` and watch service now keep cloud projects that have
an absolute local path (bisync copy) instead of skipping all cloud projects
- `sync-setup` and `project add --cloud --local-path` set both `path` and
`local_sync_path` to the local directory
- `sync-setup` creates the project in the local DB for immediate MCP use
- `_get_sync_project` falls back from `local_sync_path` to `path`
- Config load errors now show user-friendly messages instead of stack traces
Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
Signed-off-by: phernandez <paul@basicmachines.co>
Refactor CLI commands to use typed ProjectClient instead of raw HTTP calls,
and add workspace metadata to cloud project listings so users can distinguish
personal vs organization projects.
Key changes:
- 🔧 CLI commands now use ProjectClient typed API clients instead of
call_get/call_post with manual URL construction
- 🏢 Cloud project listings include workspace_name, workspace_type, and
workspace_tenant_id for each cloud-sourced project
- Pass config.default_workspace when fetching cloud projects via
_fetch_cloud_projects() and CLI list_projects
- Add --workspace flag to `bm project list` for explicit workspace override
- Add "Workspace" column to CLI project list table
- Add `bm tool list-projects` and `bm tool list-workspaces` JSON commands
- Comprehensive tests for workspace passthrough, merge behavior, and CLI routing
Co-Authored-By: Claude Opus 4.6 <noreply@anthropic.com>
Signed-off-by: phernandez <paul@basicmachines.co>
Add a new config option to enforce frontmatter on markdown sync when missing, writing derived title/type/permalink and updating in-memory metadata before upsert. Add startup warning when this option is combined with disable_permalinks to make precedence explicit. Add config/sync/initialization tests for the new behavior, and stabilize project list CLI integration assertions by forcing a wide terminal in tests to avoid Rich truncation.
Signed-off-by: phernandez <paul@basicmachines.co>
When a file exists in the database but is missing from the filesystem,
the sync worker now treats this as a deletion instead of crashing.
The sync_file() method catches FileNotFoundError specifically and calls
handle_delete() to clean up the orphaned database record. This prevents
the sync from failing on database/filesystem inconsistencies that can
occur due to race conditions, manual file deletions, or cloud storage
caching issues.
Includes a test to verify the graceful handling behavior.
Fixes#386🤖 Generated with [Claude Code](https://claude.com/claude-code)
Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>
Signed-off-by: phernandez <paul@basicmachines.co>
- Remove deprecated auth_server_provider parameter
- Use auth parameter correctly with OAuthProvider instead of AuthSettings
- Fixes type error after dependency updates
🤖 Generated with [Claude Code](https://claude.ai/code)
Co-Authored-By: Claude <noreply@anthropic.com>
phernandez