Overhaul the pipeline configuration logic by collapsing all dynamic
configuration options, both for analyses and pipes into a single
dictionary. Change all the interfaces so that there is no longer
distinction between the configuration of an analysis and of pipes.
Expose these options to the command line via `--{name}-configuration`
options for each pipe/analysis that is applicable to the command-line
invocation.
Overhaul the logic and method names involved in enabling and disabling
reference caching in `TupleTree<T>`. `TupleTreeReference<T, U>` now
lazily caches the target and will traverse the path only when needed.
Also expose and use these functions in the new pipeline, which should
provide some speedup when executing a `Schedule`.
Instead of executing `chdir` when using the `-C` option, which is
fragile when other paths are involved, store the option in the click
context and propagate it to the required code paths that require knowing
what the base directory is.
Add the functionality the the pipeline infrastructure and CLI to run
individual pipe and analyses as subcommands instead of in-process. This
allow better debuggability of individual pipes.
Now commands 'pype project artifact' and 'pype pipeline run_pipe' now
accepts --format to specify in which format to serialize the resulting
container, and have --tar and --yaml shortcuts. Moreover, these commands
and 'pipe pipeline run_analysis' can automatically figure out the format
of containers so the user won't have to specify them most of the time.
Now the pype command has a `--verbose` argument that to enable debug
logging in the pypelien code.
Adapted the codebase to use this new logging format but replacing
`logging` with `revng.pypeline.utils.logger`, this is done in
preparation of debug-log.
Now pype has an `autocomplete` command usable to enable autocompletion
and revng2 now is based on `pype`, modifying its defalults and
injecting new commands.
When click calls the command handler functions, dashes are converted to
underscores to work with the variable name limitations of python. When
accessing kwargs, convert the argument name to the underscored version.