* patcher: add tool to retrieve types
* program-model: fix codequery indexing
CodeQuery was run on the task without the patch applied, thus the
context was confusing the patcher, which was not able to generate a new
patch
* common: add workdir_from_dockerfile API in ChallengeTask
* program-model: mount local source directory when indexing
* program-model: configure graphdb_url from settings
* program-model/tree-sitter: refactor classes
* program-model/tree-sitter: change how paths are considered
This allows to parse also code in oss-fuzz (e.g. injected fuzz targets
not in upstream project)
* common: change name format for challenge commit
* program-model/codequery: make it persistent and nice
* program-model: disable janus & co for now
* patcher: make use of codequery instead of just tree-sitter
* program-model: add integration tests for codequery
* program-model/codequery: add support for different languages
* patcher: install codequery in patcher's container
* ci: fix codequery install
* program-model: ensure cqdb storage in /crs_scratch
* program-model: ensure the cqdb storage is available only at the end
* Add skeleton for api call
* Modify encoding and decoding nodes/edges
* Add change encoding from base64 to hex
* reformat
* Target libpng function in example
* remove old project name
* cli fixes
* Add get_function via byte offsets
* refactor
---------
Co-authored-by: Ian Smith <ian.smith@trailofbits.com>
* Create the TaskMeta structure in the task directory
it contains information about project name and focus.
* lint
* Address review
* Restore name property
* Add documentation
* Add janusgraph custom configuration. Simply graph creation.
* Add properties to edges. Index on uri property.
* reformat
* Create libpng graph in a more reasonable amount of time.
* Update README.md
* Wrap indexing into function
* updating...
* update proto
* fix command
* Update settings for serve and processing indexing
* Add dockerfile to docker container
* Add trigger script
* Fix error with loading graphml file
* reformat
* Remove resource constraints for program model
* Change permissions of temp dir
* Update readme
* Update dockerignore
---------
Co-authored-by: Evan Downing <2077950+evandowning@users.noreply.github.com>
Riccardo Schirone