chore: update version to 0.16.0 for v0.16.0 release

Signed-off-by: phernandez <paul@basicmachines.co>

.claude/agents/python-developer.md

@@ -0,0 +1,154 @@
+---
+name: python-developer
+description: Python backend developer specializing in FastAPI, DBOS workflows, and API implementation. Implements specifications into working Python services and follows modern Python best practices.
+model: sonnet
+color: red
+---
+
+You are an expert Python developer specializing in implementing specifications into working Python services and APIs. You have deep expertise in Python language features, FastAPI, DBOS workflows, database operations, and the Basic Memory Cloud backend architecture.
+
+**Primary Role: Backend Implementation Agent**
+You implement specifications into working Python code and services. You read specs from basic-memory, implement the requirements using modern Python patterns, and update specs with implementation progress and decisions.
+
+**Core Responsibilities:**
+
+**Specification Implementation:**
+- Read specs using basic-memory MCP tools to understand backend requirements
+- Implement Python services, APIs, and workflows that fulfill spec requirements
+- Update specs with implementation progress, decisions, and completion status
+- Document any architectural decisions or modifications needed during implementation
+
+**Python/FastAPI Development:**
+- Create FastAPI applications with proper middleware and dependency injection
+- Implement DBOS workflows for durable, long-running operations
+- Design database schemas and implement repository patterns
+- Handle authentication, authorization, and security requirements
+- Implement async/await patterns for optimal performance
+
+**Backend Implementation Process:**
+1. **Read Spec**: Use `mcp__basic-memory__read_note` to get spec requirements
+2. **Analyze Existing Patterns**: Study codebase architecture and established patterns before implementing
+3. **Follow Modular Structure**: Create separate modules/routers following existing conventions
+4. **Implement**: Write Python code following spec requirements and codebase patterns
+5. **Test**: Create tests that validate spec success criteria
+6. **Update Spec**: Document completion and any implementation decisions
+7. **Validate**: Run tests and ensure integration works correctly
+
+**Technical Standards:**
+- Follow PEP 8 and modern Python conventions
+- Use type hints throughout the codebase
+- Implement proper error handling and logging
+- Use async/await for all database and external service calls
+- Write comprehensive tests using pytest
+- Follow security best practices for web APIs
+- Document functions and classes with clear docstrings
+
+**Codebase Architecture Patterns:**
+
+**CLI Structure Patterns:**
+- Follow existing modular CLI pattern: create separate CLI modules (e.g., `upload_cli.py`) instead of adding commands directly to `main.py`
+- Existing examples: `polar_cli.py`, `tenant_cli.py` in `apps/cloud/src/basic_memory_cloud/cli/`
+- Register new CLI modules using `app.add_typer(new_cli, name="command", help="description")`
+- Maintain consistent command structure and help text patterns
+
+**FastAPI Router Patterns:**
+- Create dedicated routers for logical endpoint groups instead of adding routes directly to main app
+- Place routers in dedicated files (e.g., `apps/api/src/basic_memory_cloud_api/routers/webdav_router.py`)
+- Follow existing middleware and dependency injection patterns
+- Register routers using `app.include_router(router, prefix="/api-path")`
+
+**Modular Organization:**
+- Always analyze existing codebase structure before implementing new features
+- Follow established file organization and naming conventions
+- Create separate modules for distinct functionality areas
+- Maintain consistency with existing architectural decisions
+- Preserve separation of concerns across service boundaries
+
+**Pattern Analysis Process:**
+1. Examine similar existing functionality in the codebase
+2. Identify established patterns for file organization and module structure
+3. Follow the same architectural approach for consistency
+4. Create new modules/routers following existing conventions
+5. Integrate new code using established registration patterns
+
+**Basic Memory Cloud Expertise:**
+
+**FastAPI Service Patterns:**
+- Multi-app architecture (Cloud, MCP, API services)
+- Shared middleware for JWT validation, CORS, logging
+- Dependency injection for services and repositories
+- Proper async request handling and error responses
+
+**DBOS Workflow Implementation:**
+- Durable workflows for tenant provisioning and infrastructure operations
+- Service layer pattern with repository data access
+- Event sourcing for audit trails and business processes
+- Idempotent operations with proper error handling
+
+**Database & Repository Patterns:**
+- SQLAlchemy with async patterns
+- Repository pattern for data access abstraction
+- Database migration strategies
+- Multi-tenant data isolation patterns
+
+**Authentication & Security:**
+- JWT token validation and middleware
+- OAuth 2.1 flow implementation
+- Tenant-specific authorization patterns
+- Secure API design and input validation
+
+**Code Quality Standards:**
+- Clear, descriptive variable and function names
+- Proper docstrings for functions and classes
+- Handle edge cases and error conditions gracefully
+- Use context managers for resource management
+- Apply composition over inheritance
+- Consider security implications for all API endpoints
+- Optimize for performance while maintaining readability
+
+**Testing & Validation:**
+- Write pytest tests that validate spec requirements
+- Include unit tests for business logic
+- Integration tests for API endpoints
+- Test error conditions and edge cases
+- Use fixtures for consistent test setup
+- Mock external dependencies appropriately
+
+**Debugging & Problem Solving:**
+- Analyze error messages and stack traces methodically
+- Identify root causes rather than applying quick fixes
+- Use logging effectively for troubleshooting
+- Apply systematic debugging approaches
+- Document solutions for future reference
+
+**Basic Memory Integration:**
+- Use `mcp__basic-memory__read_note` to read specifications
+- Use `mcp__basic-memory__edit_note` to update specs with progress
+- Document implementation patterns and decisions
+- Link related services and database schemas
+- Maintain implementation history and troubleshooting guides
+
+**Communication Style:**
+- Focus on concrete implementation results and working code
+- Document technical decisions and trade-offs clearly
+- Ask specific questions about requirements and constraints
+- Provide clear status updates on implementation progress
+- Explain code choices and architectural patterns
+
+**Deliverables:**
+- Working Python services that meet spec requirements
+- Updated specifications with implementation status
+- Comprehensive tests validating functionality
+- Clean, maintainable, type-safe Python code
+- Proper error handling and logging
+- Database migrations and schema updates
+
+**Key Principles:**
+- Implement specifications faithfully and completely
+- Write clean, efficient, and maintainable Python code
+- Follow established patterns and conventions
+- Apply proper error handling and security practices
+- Test thoroughly and document implementation decisions
+- Balance performance with code clarity and maintainability
+
+When handed a specification via `/spec implement`, you will read the spec, understand the requirements, implement the Python solution using appropriate patterns and frameworks, create tests to validate functionality, and update the spec with completion status and any implementation notes.

.claude/agents/system-architect.md

@@ -0,0 +1,126 @@
+---
+name: system-architect
+description: System architect who designs and implements architectural solutions, creates ADRs, and applies software engineering principles to solve complex system design problems.
+model: sonnet
+color: blue
+---
+
+You are a Senior System Architect who designs and implements architectural solutions for complex software systems. You have deep expertise in software engineering principles, system design, multi-tenant SaaS architecture, and the Basic Memory Cloud platform.
+
+**Primary Role: Architectural Implementation Agent**
+You design system architecture and implement architectural decisions through code, configuration, and documentation. You read specs from basic-memory, create architectural solutions, and update specs with implementation progress.
+
+**Core Responsibilities:**
+
+**Specification Implementation:**
+- Read architectural specs using basic-memory MCP tools
+- Design and implement system architecture solutions
+- Create code scaffolding, service structure, and system interfaces
+- Update specs with architectural decisions and implementation status
+- Document ADRs (Architectural Decision Records) for significant choices
+
+**Architectural Design & Implementation:**
+- Design multi-service system architectures
+- Implement service boundaries and communication patterns
+- Create database schemas and migration strategies
+- Design authentication and authorization systems
+- Implement infrastructure-as-code patterns
+
+**System Implementation Process:**
+1. **Read Spec**: Use `mcp__basic-memory__read_note` to understand architectural requirements
+2. **Design Solution**: Apply architectural principles and patterns
+3. **Implement Structure**: Create service scaffolding, interfaces, configurations
+4. **Document Decisions**: Create ADRs documenting architectural choices
+5. **Update Spec**: Record implementation progress and decisions
+6. **Validate**: Ensure implementation meets spec success criteria
+
+**Architectural Principles Applied:**
+- DRY (Don't Repeat Yourself) - Single sources of truth
+- KISS (Keep It Simple Stupid) - Favor simplicity over cleverness
+- YAGNI (You Aren't Gonna Need It) - Build only what's needed now
+- Principle of Least Astonishment - Intuitive system behavior
+- Separation of Concerns - Clear boundaries and responsibilities
+
+**Basic Memory Cloud Expertise:**
+
+**Multi-Service Architecture:**
+- **Cloud Service**: Tenant management, OAuth 2.1, DBOS workflows
+- **MCP Gateway**: JWT validation, tenant routing, MCP proxy
+- **Web App**: Vue.js frontend, OAuth flows, user interface
+- **API Service**: Per-tenant Basic Memory instances with MCP
+
+**Multi-Tenant SaaS Patterns:**
+- **Tenant Isolation**: Infrastructure-level isolation with dedicated instances
+- **Database-per-tenant**: Isolated PostgreSQL databases
+- **Authentication**: JWT tokens with tenant-specific claims
+- **Provisioning**: DBOS workflows for durable operations
+- **Resource Management**: Fly.io machine lifecycle management
+
+**Implementation Capabilities:**
+- FastAPI service structure and middleware
+- DBOS workflow implementation
+- Database schema design and migrations
+- JWT authentication and authorization
+- Fly.io deployment configuration
+- Service communication patterns
+
+**Technical Implementation:**
+- Create service scaffolding and project structure
+- Implement authentication and authorization middleware
+- Design database schemas and relationships
+- Configure deployment and infrastructure
+- Implement monitoring and health checks
+- Create API interfaces and contracts
+
+**Code Quality Standards:**
+- Follow established patterns and conventions
+- Implement proper error handling and logging
+- Design for scalability and maintainability
+- Apply security best practices
+- Create comprehensive tests for architectural components
+- Document system behavior and interfaces
+
+**Decision Documentation:**
+- Create ADRs for significant architectural choices
+- Document trade-offs and alternative approaches considered
+- Maintain decision history and rationale
+- Link architectural decisions to implementation code
+- Update decisions when new information becomes available
+
+**Basic Memory Integration:**
+- Use `mcp__basic-memory__read_note` to read architectural specs
+- Use `mcp__basic-memory__write_note` to create ADRs and architectural documentation
+- Use `mcp__basic-memory__edit_note` to update specs with implementation progress
+- Document architectural patterns and anti-patterns for reuse
+- Maintain searchable knowledge base of system design decisions
+
+**Communication Style:**
+- Focus on implemented solutions and concrete architectural artifacts
+- Document decisions with clear rationale and trade-offs
+- Provide specific implementation guidance and code examples
+- Ask targeted questions about requirements and constraints
+- Explain architectural choices in terms of business and technical impact
+
+**Deliverables:**
+- Working system architecture implementations
+- ADRs documenting architectural decisions
+- Service scaffolding and interface definitions
+- Database schemas and migration scripts
+- Configuration and deployment artifacts
+- Updated specifications with implementation status
+
+**Anti-Patterns to Avoid:**
+- Premature optimization over correctness
+- Over-engineering for current needs
+- Building without clear requirements
+- Creating multiple sources of truth
+- Implementing solutions without understanding root causes
+
+**Key Principles:**
+- Implement architectural decisions through working code
+- Document all significant decisions and trade-offs
+- Build systems that teams can understand and maintain
+- Apply proven patterns and avoid reinventing solutions
+- Balance current needs with long-term maintainability
+
+When handed an architectural specification via `/spec implement`, you will read the spec, design the solution applying architectural principles, implement the necessary code and configuration, document decisions through ADRs, and update the spec with completion status and architectural notes.

.claude/commands/spec.md

@@ -0,0 +1,55 @@
+---
+allowed-tools: mcp__basic-memory__write_note, mcp__basic-memory__read_note, mcp__basic-memory__search_notes, mcp__basic-memory__edit_note, Task
+argument-hint: [create|status|implement|review] [spec-name]
+description: Manage specifications in our development process
+---
+
+## Context
+
+You are managing specifications using our specification-driven development process defined in @docs/specs/SPEC-001.md.
+
+Available commands:
+- `create [name]` - Create new specification
+- `status` - Show all spec statuses
+- `implement [spec-name]` - Hand spec to appropriate agent
+- `review [spec-name]` - Review implementation against spec
+
+## Your task
+
+Execute the spec command: `/spec $ARGUMENTS`
+
+### If command is "create":
+1. Get next SPEC number by searching existing specs
+2. Create new spec using template from @docs/specs/Slash\ Commands\ Reference.md
+3. Place in `/specs` folder with title "SPEC-XXX: [name]"
+4. Include standard sections: Why, What, How, How to Evaluate
+
+### If command is "status":
+1. Search all notes in `/specs` folder
+2. Display table with spec number, title, and status
+3. Show any dependencies or assigned agents
+
+### If command is "implement":
+1. Read the specified spec
+2. Determine appropriate agent based on content:
+   - Frontend/UI → vue-developer
+   - Architecture/system → system-architect  
+   - Backend/API → python-developer
+3. Launch Task tool with appropriate agent and spec context
+
+### If command is "review":
+1. Read the specified spec and its "How to Evaluate" section
+2. Review current implementation against success criteria with careful evaluation of:
+   - **Functional completeness** - All specified features working
+   - **Test coverage analysis** - Actual test files and coverage percentage
+     - Count existing test files vs required components/APIs/composables
+     - Verify unit tests, integration tests, and end-to-end tests
+     - Check for missing test categories (component, API, workflow)
+   - **Code quality metrics** - TypeScript compilation, linting, performance
+   - **Architecture compliance** - Component isolation, state management patterns
+   - **Documentation completeness** - Implementation matches specification
+3. Provide honest, accurate assessment - do not overstate completeness
+4. Document findings and update spec with review results
+5. If gaps found, clearly identify what still needs to be implemented/tested
+
+Use the agent definitions from @docs/specs/Agent\ Definitions.md for implementation handoffs.

.claude/commands/test-live.md

@@ -11,7 +11,7 @@ All test results are recorded as notes in a dedicated test project.
 **Parameters:**
 - `phase` (optional): Specific test phase to run (`recent`, `core`, `features`, `edge`, `workflows`, `stress`, or `all`)
 - `recent` - Focus on recent changes and new features (recommended for regular testing)
-- `core` - Essential tools only (Tier 1: write_note, read_note, search_notes, edit_note, list_projects, switch_project)
+- `core` - Essential tools only (Tier 1: write_note, read_note, search_notes, edit_note, list_memory_projects, recent_activity)
 - `features` - Core + important workflows (Tier 1 + Tier 2)
 - `all` - Comprehensive testing of all tools and scenarios
 
@@ -24,30 +24,66 @@ When the user runs `/project:test-live`, execute comprehensive test plan:
 
 ### **Tier 1: Critical Core (Always Test)**
 1. **write_note** - Foundation of all knowledge creation
-2. **read_note** - Primary knowledge retrieval mechanism  
+2. **read_note** - Primary knowledge retrieval mechanism
 3. **search_notes** - Essential for finding information
 4. **edit_note** - Core content modification capability
-5. **list_memory_projects** - Project discovery and status
-6. **switch_project** - Context switching for multi-project workflows
+5. **list_memory_projects** - Project discovery and session guidance
+6. **recent_activity** - Project discovery mode and activity analysis
 
 ### **Tier 2: Important Workflows (Usually Test)**
-7. **recent_activity** - Understanding what's changed
-8. **build_context** - Conversation continuity via memory:// URLs
-9. **create_memory_project** - Essential for project setup
-10. **move_note** - Knowledge organization
-11. **sync_status** - Understanding system state
+7. **build_context** - Conversation continuity via memory:// URLs
+8. **create_memory_project** - Essential for project setup
+9. **move_note** - Knowledge organization
+10. **sync_status** - Understanding system state
+11. **delete_project** - Project lifecycle management
 
 ### **Tier 3: Enhanced Functionality (Sometimes Test)**
 12. **view_note** - Claude Desktop artifact display
 13. **read_content** - Raw content access
 14. **delete_note** - Content removal
 15. **list_directory** - File system exploration
-16. **set_default_project** - Configuration
-17. **delete_project** - Administrative cleanup
+16. **edit_note** (advanced modes) - Complex find/replace operations
 
 ### **Tier 4: Specialized (Rarely Test)**
-18. **canvas** - Obsidian visualization (specialized use case)
-19. **MCP Prompts** - Enhanced UX tools (ai_assistant_guide, continue_conversation)
+17. **canvas** - Obsidian visualization (specialized use case)
+18. **MCP Prompts** - Enhanced UX tools (ai_assistant_guide, continue_conversation)
+
+## Stateless Architecture Testing
+
+### **Project Discovery Workflow (CRITICAL)**
+Test the new stateless project selection flow:
+
+1. **Initial Discovery**
+   - Call `list_memory_projects()` without knowing which project to use
+   - Verify clear session guidance appears: "Next: Ask which project to use"
+   - Confirm removal of CLI-specific references
+
+2. **Activity-Based Discovery**
+   - Call `recent_activity()` without project parameter (discovery mode)
+   - Verify intelligent project suggestions based on activity
+   - Test guidance: "Should I use [most-active-project] for this task?"
+
+3. **Session Tracking Validation**
+   - Verify all tool responses include `[Session: Using project 'name']`
+   - Confirm guidance reminds about session-wide project tracking
+
+4. **Single Project Constraint Mode**
+   - Test MCP server with `--project` parameter
+   - Verify all operations constrained to specified project
+   - Test project override behavior in constrained mode
+
+### **Explicit Project Parameters (CRITICAL)**
+All tools must require explicit project parameters:
+
+1. **Parameter Validation**
+   - Test all Tier 1 tools require `project` parameter
+   - Verify clear error messages for missing project
+   - Test invalid project name handling
+
+2. **No Session State Dependencies**
+   - Confirm no tool relies on "current project" concept
+   - Test rapid project switching within conversation
+   - Verify each call is truly independent
 
 ### Pre-Test Setup
 
@@ -72,7 +108,7 @@ Run the bash `date` command to get the current date/time.
    Purpose: Record all test observations and results
    ```
 
-Make sure to switch to the newly created project with the `switch_project()` tool.
+Make sure to use the newly created project for all subsequent test operations by specifying it in the `project` parameter of each tool call.
 
 4. **Baseline Documentation**
    Create initial test session note with:
@@ -143,46 +179,42 @@ Test essential MCP tools that form the foundation of Basic Memory:
 - ⚠️ Error scenarios (invalid operations)
 
 **5. list_memory_projects Tests (Critical):**
-- ✅ Display all projects with status indicators
-- ✅ Current and default project identification
+- ✅ Display all projects with clear session guidance
+- ✅ Project discovery workflow prompts
+- ✅ Removal of CLI-specific references
 - ✅ Empty project list handling
-- ✅ Project metadata accuracy
+- ✅ Single project constraint mode display
 
-**6. switch_project Tests (Critical):**
-- ✅ Switch between existing projects
-- ✅ Context preservation during switch
-- ⚠️ Invalid project name handling
-- ✅ Confirmation of successful switch
+**6. recent_activity Tests (Critical - Discovery Mode):**
+- ✅ Discovery mode without project parameter
+- ✅ Intelligent project suggestions based on activity
+- ✅ Guidance prompts for project selection
+- ✅ Session tracking reminders in responses
+- ⚠️ Performance with multiple projects
 
 ### Phase 2: Important Workflows (Tier 2 Tools)
 
-**7. recent_activity Tests (Important):**
-- ✅ Various timeframes ("today", "1 week", "1d")
-- ✅ Type filtering capabilities
-- ✅ Empty project scenarios
-- ⚠️ Performance with many recent changes
-
-**8. build_context Tests (Important):**
+**7. build_context Tests (Important):**
 - ✅ Different depth levels (1, 2, 3+)
 - ✅ Various timeframes for context
 - ✅ memory:// URL navigation
 - ⚠️ Performance with complex relation graphs
 
-**9. create_memory_project Tests (Important):**
+**8. create_memory_project Tests (Important):**
 - ✅ Create projects dynamically
 - ✅ Set default during creation
 - ✅ Path validation and creation
 - ⚠️ Invalid paths and names
 - ✅ Integration with existing projects
 
-**10. move_note Tests (Important):**
+**9. move_note Tests (Important):**
 - ✅ Move within same project
 - ✅ Cross-project moves with detection (#161)
 - ✅ Automatic folder creation
 - ✅ Database consistency validation
 - ⚠️ Special characters in paths
 
-**11. sync_status Tests (Important):**
+**10. sync_status Tests (Important):**
 - ✅ Background operation monitoring
 - ✅ File synchronization status
 - ✅ Project sync state reporting
@@ -190,36 +222,31 @@ Test essential MCP tools that form the foundation of Basic Memory:
 
 ### Phase 3: Enhanced Functionality (Tier 3 Tools)
 
-**12. view_note Tests (Enhanced):**
+**11. view_note Tests (Enhanced):**
 - ✅ Claude Desktop artifact display
 - ✅ Title extraction from frontmatter
 - ✅ Unicode and emoji content rendering
 - ⚠️ Error handling for non-existent notes
 
-**13. read_content Tests (Enhanced):**
+**12. read_content Tests (Enhanced):**
 - ✅ Raw file content access
 - ✅ Binary file handling
 - ✅ Image file reading
 - ⚠️ Large file performance
 
-**14. delete_note Tests (Enhanced):**
+**13. delete_note Tests (Enhanced):**
 - ✅ Single note deletion
 - ✅ Database consistency after deletion
 - ⚠️ Non-existent note handling
 - ✅ Confirmation of successful deletion
 
-**15. list_directory Tests (Enhanced):**
+**14. list_directory Tests (Enhanced):**
 - ✅ Directory content listing
 - ✅ Depth control and filtering
 - ✅ File name globbing
 - ⚠️ Empty directory handling
 
-**16. set_default_project Tests (Enhanced):**
-- ✅ Change default project
-- ✅ Configuration persistence
-- ⚠️ Invalid project handling
-
-**17. delete_project Tests (Enhanced):**
+**15. delete_project Tests (Enhanced):**
 - ✅ Project removal from config
 - ✅ Database cleanup
 - ⚠️ Default project protection
@@ -269,7 +296,7 @@ Test essential MCP tools that form the foundation of Basic Memory:
 1. Technical documentation project
 2. Personal recipe collection project
 3. Learning/course notes project
-4. Switch contexts during conversation
+4. Specify different projects for different operations
 5. Cross-reference related concepts
 
 **Content Evolution:**
@@ -281,13 +308,13 @@ Test essential MCP tools that form the foundation of Basic Memory:
 
 ### Phase 6: Specialized Tools Testing (Tier 4)
 
-**18. canvas Tests (Specialized):**
+**16. canvas Tests (Specialized):**
 - ✅ JSON Canvas generation
 - ✅ Node and edge creation
 - ✅ Obsidian compatibility
 - ⚠️ Complex graph handling
 
-**19. MCP Prompts Tests (Specialized):**
+**17. MCP Prompts Tests (Specialized):**
 - ✅ ai_assistant_guide output
 - ✅ continue_conversation functionality
 - ✅ Formatted search results
@@ -382,7 +409,7 @@ permalink: test-session-[phase]-[timestamp]
 ### 📊 Performance Metrics
 - Average write_note time: 0.3s
 - Search with 100+ notes: 0.6s
-- Project switch overhead: 0.1s
+- Project parameter overhead: <0.1s
 - Memory usage: [observed levels]
 
 ## Relations
@@ -402,7 +429,7 @@ permalink: test-session-[phase]-[timestamp]
 - Learning curve and intuitiveness
 
 **System Behavior:**
-- Context preservation across operations
+- Stateless operation independence
 - memory:// URL navigation reliability
 - Multi-step workflow cohesion
 - Edge case graceful handling

.github/workflows/claude-code-review.yml

@@ -0,0 +1,82 @@
+name: Claude Code Review
+
+on:
+  pull_request:
+    types: [opened, synchronize]
+    # Optional: Only run on specific file changes
+    # paths:
+    #   - "src/**/*.ts"
+    #   - "src/**/*.tsx"
+    #   - "src/**/*.js"
+    #   - "src/**/*.jsx"
+
+jobs:
+  claude-review:
+    # Only run for organization members and collaborators
+    if: |
+      github.event.pull_request.author_association == 'OWNER' ||
+      github.event.pull_request.author_association == 'MEMBER' ||
+      github.event.pull_request.author_association == 'COLLABORATOR'
+
+    runs-on: ubuntu-latest
+    permissions:
+      contents: read
+      pull-requests: write
+      issues: read
+      id-token: write
+
+    steps:
+      - name: Checkout repository
+        uses: actions/checkout@v4
+        with:
+          fetch-depth: 1
+
+      - name: Run Claude Code Review
+        id: claude-review
+        uses: anthropics/claude-code-action@v1
+        with:
+          claude_code_oauth_token: ${{ secrets.CLAUDE_CODE_OAUTH_TOKEN }}
+          github_token: ${{ secrets.GITHUB_TOKEN }}
+          track_progress: true  # Enable visual progress tracking
+          allowed_bots: '*'
+          prompt: |
+            Review this Basic Memory PR against our team checklist:
+
+            ## Code Quality & Standards
+            - [ ] Follows Basic Memory's coding conventions in CLAUDE.md
+            - [ ] Python 3.12+ type annotations and async patterns
+            - [ ] SQLAlchemy 2.0 best practices
+            - [ ] FastAPI and Typer conventions followed
+            - [ ] 100-character line length limit maintained
+            - [ ] No commented-out code blocks
+
+            ## Testing & Documentation
+            - [ ] Unit tests for new functions/methods
+            - [ ] Integration tests for new MCP tools
+            - [ ] Test coverage for edge cases
+            - [ ] Documentation updated (README, docstrings)
+            - [ ] CLAUDE.md updated if conventions change
+
+            ## Basic Memory Architecture
+            - [ ] MCP tools follow atomic, composable design
+            - [ ] Database changes include Alembic migrations
+            - [ ] Preserves local-first architecture principles
+            - [ ] Knowledge graph operations maintain consistency
+            - [ ] Markdown file handling preserves integrity
+            - [ ] AI-human collaboration patterns followed
+
+            ## Security & Performance
+            - [ ] No hardcoded secrets or credentials
+            - [ ] Input validation for MCP tools
+            - [ ] Proper error handling and logging
+            - [ ] Performance considerations addressed
+            - [ ] No sensitive data in logs or commits
+            
+            ## Compatability
+            - [ ] File path comparisons must be windows compatible
+            - [ ] Avoid using emojis and unicode characters in console and log output
+
+            Read the CLAUDE.md file for detailed project context. For each checklist item, verify if it's satisfied and comment on any that need attention. Use inline comments for specific code issues and post a summary with checklist results.
+
+          # Allow broader tool access for thorough code review
+          claude_args: '--allowed-tools "Bash(gh pr:*),Bash(gh issue:*),Bash(gh api:*),Bash(git log:*),Bash(git show:*),Read,Grep,Glob"'

.github/workflows/claude-issue-triage.yml

@@ -0,0 +1,71 @@
+name: Claude Issue Triage
+
+on:
+  issues:
+    types: [opened]
+
+jobs:
+  triage:
+    runs-on: ubuntu-latest
+    permissions:
+      issues: write
+      id-token: write
+    steps:
+      - name: Checkout repository
+        uses: actions/checkout@v4
+        with:
+          fetch-depth: 1
+
+      - name: Run Claude Issue Triage
+        uses: anthropics/claude-code-action@v1
+        with:
+          claude_code_oauth_token: ${{ secrets.CLAUDE_CODE_OAUTH_TOKEN }}
+          track_progress: true  # Show triage progress
+          prompt: |
+            Analyze this new Basic Memory issue and perform triage:
+
+            **Issue Analysis:**
+            1. **Type Classification:**
+               - Bug report (code defect)
+               - Feature request (new functionality)
+               - Enhancement (improvement to existing feature)
+               - Documentation (docs improvement)
+               - Question/Support (user help)
+               - MCP tool issue (specific to MCP functionality)
+
+            2. **Priority Assessment:**
+               - Critical: Security issues, data loss, complete breakage
+               - High: Major functionality broken, affects many users
+               - Medium: Minor bugs, usability issues
+               - Low: Nice-to-have improvements, cosmetic issues
+
+            3. **Component Classification:**
+               - CLI commands
+               - MCP tools
+               - Database/sync
+               - Cloud functionality
+               - Documentation
+               - Testing
+
+            4. **Complexity Estimate:**
+               - Simple: Quick fix, documentation update
+               - Medium: Requires some investigation/testing
+               - Complex: Major feature work, architectural changes
+
+            **Actions to Take:**
+            1. Add appropriate labels using: `gh issue edit ${{ github.event.issue.number }} --add-label "label1,label2"`
+            2. Check for duplicates using: `gh search issues`
+            3. If duplicate found, comment mentioning the original issue
+            4. For feature requests, ask clarifying questions if needed
+            5. For bugs, request reproduction steps if missing
+
+            **Available Labels:**
+            - Type: bug, enhancement, feature, documentation, question, mcp-tool
+            - Priority: critical, high, medium, low
+            - Component: cli, mcp, database, cloud, docs, testing
+            - Complexity: simple, medium, complex
+            - Status: needs-reproduction, needs-clarification, duplicate
+
+            Read the issue carefully and provide helpful triage with appropriate labels.
+
+          claude_args: '--allowed-tools "Bash(gh issue:*),Bash(gh search:*),Read"'

.github/workflows/claude.yml

@@ -9,106 +9,60 @@ on:
     types: [opened, assigned]
   pull_request_review:
     types: [submitted]
+  pull_request_target:
+    types: [opened, synchronize]
 
 jobs:
   claude:
     if: |
-      (github.event_name == 'issue_comment' && contains(github.event.comment.body, '@claude')) ||
-      (github.event_name == 'pull_request_review_comment' && contains(github.event.comment.body, '@claude')) ||
-      (github.event_name == 'pull_request_review' && contains(github.event.review.body, '@claude')) ||
-      (github.event_name == 'issues' && (contains(github.event.issue.body, '@claude') || contains(github.event.issue.title, '@claude')))
-
+      (
+        (github.event_name == 'issue_comment' && contains(github.event.comment.body, '@claude')) ||
+        (github.event_name == 'pull_request_review_comment' && contains(github.event.comment.body, '@claude')) ||
+        (github.event_name == 'pull_request_review' && contains(github.event.review.body, '@claude')) ||
+        (github.event_name == 'issues' && (contains(github.event.issue.body, '@claude') || contains(github.event.issue.title, '@claude'))) ||
+        (github.event_name == 'pull_request_target' && contains(github.event.pull_request.body, '@claude'))
+      ) && (
+        github.event.comment.author_association == 'OWNER' ||
+        github.event.comment.author_association == 'MEMBER' ||
+        github.event.comment.author_association == 'COLLABORATOR' ||
+        github.event.sender.author_association == 'OWNER' ||
+        github.event.sender.author_association == 'MEMBER' ||
+        github.event.sender.author_association == 'COLLABORATOR' ||
+        github.event.pull_request.author_association == 'OWNER' ||
+        github.event.pull_request.author_association == 'MEMBER' ||
+        github.event.pull_request.author_association == 'COLLABORATOR'
+      )
     runs-on: ubuntu-latest
     permissions:
       contents: read
       pull-requests: read
       issues: read
       id-token: write
+      actions: read # Required for Claude to read CI results on PRs
     steps:
-      - name: Check user permissions
-        id: check_membership
-        uses: actions/github-script@v7
-        with:
-          script: |
-            let actor;
-            if (context.eventName === 'issue_comment') {
-              actor = context.payload.comment.user.login;
-            } else if (context.eventName === 'pull_request_review_comment') {
-              actor = context.payload.comment.user.login;
-            } else if (context.eventName === 'pull_request_review') {
-              actor = context.payload.review.user.login;
-            } else if (context.eventName === 'issues') {
-              actor = context.payload.issue.user.login;
-            }
-            
-            console.log(`Checking permissions for user: ${actor}`);
-            
-            // List of explicitly allowed users (organization members)
-            const allowedUsers = [
-              'phernandez',
-              'groksrc',
-              'nellins',
-              'bm-claudeai'
-            ];
-            
-            if (allowedUsers.includes(actor)) {
-              console.log(`User ${actor} is in the allowed list`);
-              core.setOutput('is_member', true);
-              return;
-            }
-            
-            // Fallback: Check if user has repository permissions
-            try {
-              const collaboration = await github.rest.repos.getCollaboratorPermissionLevel({
-                owner: context.repo.owner,
-                repo: context.repo.repo,
-                username: actor
-              });
-              
-              const permission = collaboration.data.permission;
-              console.log(`User ${actor} has permission level: ${permission}`);
-              
-              // Allow if user has push access or higher (write, maintain, admin)
-              const allowed = ['write', 'maintain', 'admin'].includes(permission);
-              
-              core.setOutput('is_member', allowed);
-              
-              if (!allowed) {
-                core.notice(`User ${actor} does not have sufficient repository permissions (has: ${permission})`);
-              }
-            } catch (error) {
-              console.log(`Error checking permissions: ${error.message}`);
-              
-              // Final fallback: Check if user is a public member of the organization
-              try {
-                const membership = await github.rest.orgs.getMembershipForUser({
-                  org: 'basicmachines-co',
-                  username: actor
-                });
-                
-                const allowed = membership.data.state === 'active';
-                core.setOutput('is_member', allowed);
-                
-                if (!allowed) {
-                  core.notice(`User ${actor} is not a public member of basicmachines-co organization`);
-                }
-              } catch (membershipError) {
-                console.log(`Error checking organization membership: ${membershipError.message}`);
-                core.setOutput('is_member', false);
-                core.notice(`User ${actor} does not have access to this repository`);
-              }
-            }
-
       - name: Checkout repository
-        if: steps.check_membership.outputs.is_member == 'true'
         uses: actions/checkout@v4
         with:
+          # For pull_request_target, checkout the PR head to review the actual changes
+          ref: ${{ github.event_name == 'pull_request_target' && github.event.pull_request.head.sha || github.sha }}
           fetch-depth: 1
 
       - name: Run Claude Code
-        if: steps.check_membership.outputs.is_member == 'true'
         id: claude
-        uses: anthropics/claude-code-action@beta
+        uses: anthropics/claude-code-action@v1
         with:
-          anthropic_api_key: ${{ secrets.ANTHROPIC_API_KEY }}
-          allowed_tools: Bash(uv run pytest),Bash(uv run ruff check . --fix),Bash(uv run ruff format .),Bash(uv run pyright),Bash(just test),Bash(just lint),Bash(just format),Bash(just type-check),Bash(just check),Read,Write,Edit,MultiEdit,Glob,Grep,LS, mcp__web_search
+          claude_code_oauth_token: ${{ secrets.CLAUDE_CODE_OAUTH_TOKEN }}
+          track_progress: true  # Enable visual progress tracking
+          
+          # This is an optional setting that allows Claude to read CI results on PRs
+          additional_permissions: |
+            actions: read
+
+          # Optional: Give a custom prompt to Claude. If this is not specified, Claude will perform the instructions specified in the comment that tagged it.
+          # prompt: 'Update the pull request description to include a summary of changes.'
+
+          # Optional: Add claude_args to customize behavior and configuration
+          # See https://github.com/anthropics/claude-code-action/blob/main/docs/usage.md
+          # or https://docs.claude.com/en/docs/claude-code/sdk#command-line for available options
+          # claude_args: '--model claude-opus-4-1-20250805 --allowed-tools Bash(gh pr:*)'
+

.github/workflows/test.yml

@@ -18,7 +18,7 @@ jobs:
       fail-fast: false
       matrix:
         os: [ubuntu-latest, windows-latest]
-        python-version: [ "3.12" ]
+        python-version: [ "3.12", "3.13" ]
     runs-on: ${{ matrix.os }}
 
     steps:
@@ -58,9 +58,13 @@ jobs:
 
       - name: Run type checks
         run: |
-          just type-check
+          just typecheck
+
+      - name: Run linting
+        run: |
+          just lint
 
       - name: Run tests
         run: |
           uv pip install pytest pytest-cov
-          just test
+          just test

CHANGELOG.md

@@ -1,5 +1,655 @@
 # CHANGELOG
 
+## v0.16.0 (2025-11-10)
+
+### Features
+
+- **#417**: Add run_in_background parameter to sync endpoint
+  ([`7ccec7e`](https://github.com/basicmachines-co/basic-memory/commit/7ccec7e))
+  - New `run_in_background` parameter for async sync operations
+  - Improved API flexibility for long-running sync tasks
+  - Comprehensive test coverage for background sync behavior
+
+- **#405**: SPEC-20 Simplified Project-Scoped Rclone Sync
+  ([`0b3272a`](https://github.com/basicmachines-co/basic-memory/commit/0b3272a))
+  - Simplified and more reliable cloud synchronization
+  - Project-scoped rclone configuration
+  - Better error handling and status reporting
+
+- **#384**: Streaming Foundation & Async I/O Consolidation (SPEC-19)
+  ([`e78345f`](https://github.com/basicmachines-co/basic-memory/commit/e78345f))
+  - Foundation for streaming support in future releases
+  - Consolidated async I/O patterns across codebase
+  - Improved performance and resource management
+
+- **#364**: Add circuit breaker for file sync failures
+  ([`434cdf2`](https://github.com/basicmachines-co/basic-memory/commit/434cdf2))
+  - Prevents cascading failures during sync operations
+  - Automatic recovery from transient errors
+  - Better resilience in cloud sync scenarios
+
+- **#362**: Add --verbose and --no-gitignore options to cloud upload
+  ([`7f9c1a9`](https://github.com/basicmachines-co/basic-memory/commit/7f9c1a9))
+  - Enhanced upload control with verbose logging
+  - Option to bypass gitignore filtering when needed
+  - Better debugging and troubleshooting capabilities
+
+- **#391**: Add delete_notes parameter to remove project endpoint
+  ([`c9946ec`](https://github.com/basicmachines-co/basic-memory/commit/c9946ec))
+  - Option to delete notes when removing projects
+  - Safer project cleanup workflows
+  - Prevents accidental data loss
+
+### Bug Fixes
+
+- **#420**: Skip archive files during cloud upload
+  ([`49b2adc`](https://github.com/basicmachines-co/basic-memory/commit/49b2adc))
+  - Prevents uploading of zip, tar, gz and other archive files
+  - Reduces storage usage and upload time
+  - Better file filtering during cloud operations
+
+- **#419**: Rename write_note entity_type to note_type for clarity
+  ([`1646572`](https://github.com/basicmachines-co/basic-memory/commit/1646572))
+  - Clearer parameter naming in write_note tool
+  - Improved API consistency and documentation
+  - Better developer experience
+
+- **#418**: Quote string values in YAML frontmatter to handle special characters
+  ([`f0d7398`](https://github.com/basicmachines-co/basic-memory/commit/f0d7398))
+  - Fixes YAML parsing errors with special characters
+  - More robust frontmatter handling
+  - Prevents data corruption in edge cases
+
+- **#415**: Handle dict objects in write_resource endpoint
+  ([`4614fd0`](https://github.com/basicmachines-co/basic-memory/commit/4614fd0))
+  - Fixes errors when writing dictionary resources
+  - Better type handling in resource endpoints
+  - Improved API robustness
+
+- **#414**: Replace Unicode arrows with ASCII for Windows compatibility
+  ([`fc01f6a`](https://github.com/basicmachines-co/basic-memory/commit/fc01f6a))
+  - Fixes display issues on Windows terminals
+  - Better cross-platform compatibility
+  - Improved CLI user experience on Windows
+
+- **#411**: Windows CLI Unicode encoding errors
+  ([`0ba6f21`](https://github.com/basicmachines-co/basic-memory/commit/0ba6f21))
+  - Resolves Unicode encoding issues on Windows
+  - Better handling of international characters
+  - Improved Windows platform support
+
+- **#410**: Various rclone fixes for cloud sync on Windows
+  ([`c9946ec`](https://github.com/basicmachines-co/basic-memory/commit/c9946ec))
+  - Fixes cloud sync reliability on Windows
+  - Better path handling for Windows filesystem
+  - Improved rclone integration on Windows
+
+- **#402**: Normalize YAML frontmatter types to prevent AttributeError
+  ([`a7d7cc5`](https://github.com/basicmachines-co/basic-memory/commit/a7d7cc5))
+  - Fixes AttributeError when reading frontmatter
+  - More robust type normalization
+  - Better error handling in markdown parsing
+
+- **#396**: Strip duplicate headers in edit_note replace_section
+  ([`021af74`](https://github.com/basicmachines-co/basic-memory/commit/021af74))
+  - Prevents duplicate headers when replacing sections
+  - Cleaner note editing behavior
+  - Better content consistency
+
+- **#395**: Simplify search_notes schema by removing Optional wrappers
+  ([`d775f7b`](https://github.com/basicmachines-co/basic-memory/commit/d775f7b))
+  - Cleaner API schema definition
+  - Better type safety and validation
+  - Improved developer experience
+
+- **#394**: Add explicit type annotations to MCP tool parameters
+  ([`581b7b1`](https://github.com/basicmachines-co/basic-memory/commit/581b7b1))
+  - Better type safety in MCP tools
+  - Improved IDE support and autocomplete
+  - Clearer tool documentation
+
+- **#389**: Handle null, empty, and string 'None' title in markdown frontmatter
+  ([`bb8da31`](https://github.com/basicmachines-co/basic-memory/commit/bb8da31))
+  - Fixes errors with malformed frontmatter titles
+  - More robust title handling
+  - Better error recovery
+
+- **#380**: Optimize sync memory usage to prevent OOM on large projects
+  ([`4fd6d0c`](https://github.com/basicmachines-co/basic-memory/commit/4fd6d0c))
+  - Prevents out-of-memory errors on large knowledge bases
+  - Better memory management during sync
+  - Improved scalability
+
+- **#379**: Handle YAML parsing errors gracefully in update_frontmatter
+  ([`32236cd`](https://github.com/basicmachines-co/basic-memory/commit/32236cd))
+  - Better error handling for malformed YAML
+  - Graceful degradation instead of crashes
+  - Improved robustness
+
+- **#377**: Preserve mtime on WebDAV upload
+  ([`e6c8e36`](https://github.com/basicmachines-co/basic-memory/commit/e6c8e36))
+  - Maintains file modification times during upload
+  - Better sync accuracy
+  - Prevents unnecessary re-syncing
+
+- **#370**: Prevent deleted projects from being recreated by background sync
+  ([`449b62d`](https://github.com/basicmachines-co/basic-memory/commit/449b62d))
+  - Fixes race condition with project deletion
+  - Better lifecycle management
+  - Prevents unwanted project recreation
+
+- **#369**: Use filesystem timestamps for entity sync instead of database operation time
+  ([`b7497d7`](https://github.com/basicmachines-co/basic-memory/commit/b7497d7))
+  - More accurate sync detection
+  - Better handling of external file modifications
+  - Improved sync reliability
+
+- **#368**: Handle YAML parsing errors and missing entity_type in markdown files
+  ([`d1431bd`](https://github.com/basicmachines-co/basic-memory/commit/d1431bd))
+  - Better error handling for malformed markdown
+  - Graceful handling of missing metadata
+  - Improved robustness
+
+- **#367**: Resolve UNIQUE constraint violation in entity upsert with observations
+  ([`171bef7`](https://github.com/basicmachines-co/basic-memory/commit/171bef7))
+  - Fixes database constraint errors during sync
+  - Better handling of duplicate observations
+  - Improved data integrity
+
+- **#366**: Terminate sync immediately when project is deleted
+  ([`729a5a3`](https://github.com/basicmachines-co/basic-memory/commit/729a5a3))
+  - Faster project deletion
+  - Better resource cleanup
+  - Improved user experience
+
+- **#357**: Make project creation endpoint idempotent
+  ([`53fb13b`](https://github.com/basicmachines-co/basic-memory/commit/53fb13b))
+  - Prevents errors when creating existing projects
+  - Better API reliability
+  - Improved cloud integration
+
+- **#353**: Handle None text values in Claude conversations importer
+  ([`bd6c834`](https://github.com/basicmachines-co/basic-memory/commit/bd6c834))
+  - Fixes import errors with empty messages
+  - Better error handling in importers
+  - Improved data migration
+
+### Performance Improvements
+
+- Force full database sync after project sync/bisync operations
+  ([`2ad0ee9`](https://github.com/basicmachines-co/basic-memory/commit/2ad0ee9))
+  - Ensures database consistency after cloud operations
+  - Better sync reliability
+  - Improved data integrity
+
+### Documentation
+
+- Add free trial information to README
+  ([`a7d7cc5`](https://github.com/basicmachines-co/basic-memory/commit/a7d7cc5), [`8aaddb6`](https://github.com/basicmachines-co/basic-memory/commit/8aaddb6))
+  - Updated README with Basic Memory Cloud trial info
+  - Better onboarding experience
+  - Clearer pricing information
+
+- Announce Basic Memory Cloud launch in README
+  ([`d756531`](https://github.com/basicmachines-co/basic-memory/commit/d756531))
+  - Official cloud service announcement
+  - Updated documentation for cloud features
+  - Improved product positioning
+
+### Migration Guide
+
+No manual migration required. Upgrade with:
+
+```bash
+# Update via uv
+uv tool upgrade basic-memory
+
+# Or install fresh
+uv tool install basic-memory
+```
+
+**What's New in v0.16.0:**
+- Streaming foundation and consolidated async I/O (SPEC-19)
+- Simplified project-scoped rclone sync (SPEC-20)
+- Circuit breaker for sync failure resilience
+- Enhanced Windows platform support
+- Improved cloud upload with verbose and gitignore options
+- Better error handling across YAML parsing and frontmatter
+- Memory optimization for large projects
+- Archive file filtering during upload
+
+**Breaking Changes:**
+- `write_note` parameter renamed: `entity_type` → `note_type` for clarity
+
+### Installation
+
+```bash
+# Latest stable release
+uv tool install basic-memory
+
+# Update existing installation
+uv tool upgrade basic-memory
+
+# Docker
+docker pull ghcr.io/basicmachines-co/basic-memory:v0.16.0
+```
+
+## v0.15.2 (2025-10-14)
+
+### Features
+
+- **#356**: Add WebDAV upload command for cloud projects
+  ([`5258f45`](https://github.com/basicmachines-co/basic-memory/commit/5258f457))
+  - New `bm cloud upload` command for uploading local files/directories to cloud projects
+  - WebDAV-based file transfer with automatic directory creation
+  - Support for `.gitignore` and `.bmignore` pattern filtering
+  - Automatic project creation with `--create-project` flag
+  - Optional post-upload sync with `--sync` flag (enabled by default)
+  - Human-readable file size reporting (bytes, KB, MB)
+  - Comprehensive test coverage (28 unit tests)
+
+### Migration Guide
+
+No manual migration required. Upgrade with:
+
+```bash
+# Update via uv
+uv tool upgrade basic-memory
+
+# Or install fresh
+uv tool install basic-memory
+```
+
+**What's New:**
+- Upload local files to cloud projects with `bm cloud upload`
+- Streamlined cloud project creation and management
+- Better file filtering with gitignore integration
+
+### Installation
+
+```bash
+# Latest stable release
+uv tool install basic-memory
+
+# Update existing installation
+uv tool upgrade basic-memory
+
+# Docker
+docker pull ghcr.io/basicmachines-co/basic-memory:v0.15.2
+```
+
+## v0.15.1 (2025-10-13)
+
+### Performance Improvements
+
+- **#352**: Optimize sync/indexing for 43% faster performance
+  ([`c0538ad`](https://github.com/basicmachines-co/basic-memory/commit/c0538ad2perf0d68a2a3604e255c3f2c42c5ed))
+  - Significant performance improvements to file synchronization and indexing operations
+  - 43% reduction in sync time for large knowledge bases
+  - Optimized database queries and file processing
+
+- **#350**: Optimize directory operations for 10-100x performance improvement
+  ([`00b73b0`](https://github.com/basicmachines-co/basic-memory/commit/00b73b0d))
+  - Dramatic performance improvements for directory listing operations
+  - 10-100x faster directory traversal depending on knowledge base size
+  - Reduced memory footprint for large directory structures
+  - Exclude null fields from directory endpoint responses for smaller payloads
+
+### Bug Fixes
+
+- **#355**: Update view_note and ChatGPT tools for Claude Desktop compatibility
+  ([`2b7008d`](https://github.com/basicmachines-co/basic-memory/commit/2b7008d9))
+  - Fix view_note tool formatting for better Claude Desktop rendering
+  - Update ChatGPT tool integration for improved compatibility
+  - Enhanced artifact display in Claude Desktop interface
+
+- **#348**: Add permalink normalization to project lookups in deps.py
+  ([`a09066e`](https://github.com/basicmachines-co/basic-memory/commit/a09066e0))
+  - Fix project lookup failures due to case sensitivity
+  - Normalize permalinks consistently across project operations
+  - Improve project switching reliability
+
+- **#345**: Project deletion failing with permalink normalization
+  ([`be352ab`](https://github.com/basicmachines-co/basic-memory/commit/be352ab4))
+  - Fix project deletion errors related to permalink handling
+  - Ensure proper cleanup of project resources
+  - Improve error messages for deletion failures
+
+- **#341**: Correct ProjectItem.home property to return path instead of name
+  ([`3e876a7`](https://github.com/basicmachines-co/basic-memory/commit/3e876a75))
+  - Fix ProjectItem.home to return correct project path
+  - Resolve configuration issues with project paths
+  - Improve project path resolution consistency
+
+- **#339**: Prevent nested project paths to avoid data conflicts
+  ([`795e339`](https://github.com/basicmachines-co/basic-memory/commit/795e3393))
+  - Block creation of nested project paths that could cause data conflicts
+  - Add validation to prevent project path hierarchy issues
+  - Improve error messages for invalid project configurations
+
+- **#338**: Normalize paths to lowercase in cloud mode to prevent case collisions
+  ([`07e304c`](https://github.com/basicmachines-co/basic-memory/commit/07e304ce))
+  - Fix path case sensitivity issues in cloud deployments
+  - Normalize paths consistently across cloud operations
+  - Prevent data loss from case-insensitive filesystem collisions
+
+- **#336**: Cloud mode path validation and sanitization (bmc-issue-103)
+  ([`2a1c06d`](https://github.com/basicmachines-co/basic-memory/commit/2a1c06d9))
+  - Enhanced path validation for cloud deployments
+  - Improved path sanitization to prevent security issues
+  - Better error handling for invalid paths in cloud mode
+
+- **#332**: Cloud mode path validation and sanitization
+  ([`7616b2b`](https://github.com/basicmachines-co/basic-memory/commit/7616b2bb))
+  - Additional cloud mode path fixes and improvements
+  - Comprehensive path validation for cloud environments
+  - Security enhancements for path handling
+
+### Features
+
+- **#344**: Async client context manager pattern for cloud consolidation (SPEC-16)
+  ([`8d2e70c`](https://github.com/basicmachines-co/basic-memory/commit/8d2e70cf))
+  - Refactor async client to use context manager pattern
+  - Improve resource management and cleanup
+  - Enable better dependency injection for cloud deployments
+  - Foundation for cloud platform consolidation
+
+- **#343**: Add SPEC-15 for configuration persistence via Tigris
+  ([`53438d1`](https://github.com/basicmachines-co/basic-memory/commit/53438d1e))
+  - Design specification for persistent configuration storage
+  - Foundation for cloud configuration management
+  - Tigris S3-compatible storage integration planning
+
+- **#334**: Introduce BASIC_MEMORY_PROJECT_ROOT for path constraints
+  ([`ccc4386`](https://github.com/basicmachines-co/basic-memory/commit/ccc43866))
+  - Add environment variable for constraining project paths
+  - Improve security by limiting project creation locations
+  - Better control over project directory structure
+
+### Documentation
+
+- **#335**: v0.15.0 assistant guide updates
+  ([`c6f93a0`](https://github.com/basicmachines-co/basic-memory/commit/c6f93a02))
+  - Update AI assistant guide for v0.15.0 features
+  - Improve documentation for new MCP tools
+  - Better examples and usage patterns
+
+- **#339**: Add tool use documentation to write_note for root folder usage
+  ([`73202d1`](https://github.com/basicmachines-co/basic-memory/commit/73202d1a))
+  - Document how to use empty string for root folder in write_note
+  - Clarify folder parameter usage
+  - Improve tool documentation clarity
+
+- Fix link in ai_assistant_guide resource
+  ([`2a1c06d`](https://github.com/basicmachines-co/basic-memory/commit/2a1c06d9))
+  - Correct broken documentation links
+  - Improve resource accessibility
+
+### Refactoring
+
+- Add SPEC-17 and SPEC-18 documentation
+  ([`962d88e`](https://github.com/basicmachines-co/basic-memory/commit/962d88ea))
+  - New specification documents for future features
+  - Architecture planning and design documentation
+
+### Breaking Changes
+
+**None** - This release maintains full backward compatibility with v0.15.0
+
+### Migration Guide
+
+No manual migration required. Upgrade with:
+
+```bash
+# Update via uv
+uv tool upgrade basic-memory
+
+# Or install fresh
+uv tool install basic-memory
+```
+
+**What's Fixed:**
+- Significant performance improvements (43% faster sync, 10-100x faster directory operations)
+- Multiple cloud deployment stability fixes
+- Project path validation and normalization issues resolved
+- Better Claude Desktop and ChatGPT integration
+
+**What's New:**
+- Context manager pattern for async clients (foundation for cloud consolidation)
+- BASIC_MEMORY_PROJECT_ROOT environment variable for path constraints
+- Enhanced cloud mode path handling and security
+- SPEC-15 and SPEC-16 architecture documentation
+
+### Installation
+
+```bash
+# Latest stable release
+uv tool install basic-memory
+
+# Update existing installation
+uv tool upgrade basic-memory
+
+# Docker
+docker pull ghcr.io/basicmachines-co/basic-memory:v0.15.1
+```
+
+## v0.15.0 (2025-10-04)
+
+### Critical Bug Fixes
+
+- **Permalink Collision Data Loss Prevention** - Fixed critical bug where creating similar entity names would overwrite existing files
+  ([`2a050ed`](https://github.com/basicmachines-co/basic-memory/commit/2a050edee42b07294f5199902a60b626bfc47be8))
+  - **Issue**: Creating "Node C" would overwrite "Node A.md" due to fuzzy search incorrectly matching similar file paths
+  - **Solution**: Added `strict=True` parameter to link resolution, disabling fuzzy search fallback during entity creation
+  - **Impact**: Prevents data loss from false positive path matching like "edge-cases/Node A.md" vs "edge-cases/Node C.md"
+  - **Testing**: Comprehensive integration tests and MCP-level permalink collision tests added
+  - **Status**: Manually verified fix prevents file overwrite in production scenarios
+
+### Bug Fixes
+
+- **#330**: Remove .env file loading from BasicMemoryConfig
+  ([`f3b1945`](https://github.com/basicmachines-co/basic-memory/commit/f3b1945e4c0070d0282eaf98c085ef188c8edd2d))
+  - Clean up configuration initialization to prevent unintended environment variable loading
+
+- **#329**: Normalize underscores in memory:// URLs for build_context
+  ([`f5a11f3`](https://github.com/basicmachines-co/basic-memory/commit/f5a11f3911edda55bee6970ed9e7c38f7fd7a059))
+  - Fix URL normalization to handle underscores consistently in memory:// protocol
+  - Improve knowledge graph navigation with standardized URL handling
+
+- **#328**: Simplify entity upsert to use database-level conflict resolution
+  ([`ee83b0e`](https://github.com/basicmachines-co/basic-memory/commit/ee83b0e5a8f00cdcc8e24a0f8c9449c6eaddf649))
+  - Leverage SQLite's native UPSERT for cleaner entity creation/update logic
+  - Reduce application-level complexity by using database conflict resolution
+
+- **#312**: Add proper datetime JSON schema format annotations for MCP validation
+  ([`a7bf42e`](https://github.com/basicmachines-co/basic-memory/commit/a7bf42ef495a3e2c66230985c3445cab5c52c408))
+  - Fix MCP schema validation errors with proper datetime format annotations
+  - Ensure compatibility with strict MCP schema validators
+
+- **#281**: Fix move_note without file extension
+  ([`3e168b9`](https://github.com/basicmachines-co/basic-memory/commit/3e168b98f3962681799f4537eb86ded47e771665))
+  - Allow moving notes by title alone without requiring .md extension
+  - Improve move operation usability and error handling
+
+- **#310**: Remove obsolete update_current_project function and --project flag reference
+  ([`17a6733`](https://github.com/basicmachines-co/basic-memory/commit/17a6733c9d280def922e37c2cd171e3ee44fce21))
+  - Clean up deprecated project management code
+  - Remove unused CLI flag references
+
+- **#309**: Make sync operations truly non-blocking with thread pool
+  ([`1091e11`](https://github.com/basicmachines-co/basic-memory/commit/1091e113227c86f10f574e56a262aff72f728113))
+  - Move sync operations to background thread pool for improved responsiveness
+  - Prevent blocking during file synchronization operations
+
+### Features
+
+- **#327**: CLI Subscription Validation (SPEC-13 Phase 2)
+  ([`ace6a0f`](https://github.com/basicmachines-co/basic-memory/commit/ace6a0f50d8d0b4ea31fb526361c2d9616271740))
+  - Implement subscription validation for CLI operations
+  - Foundation for future cloud billing integration
+
+- **#322**: Cloud CLI sync via rclone bisync
+  ([`99a35a7`](https://github.com/basicmachines-co/basic-memory/commit/99a35a7fb410ef88c50050e666e4244350e44a6e))
+  - Add bidirectional cloud synchronization using rclone
+  - Enable local-cloud file sync with conflict detection
+
+- **#315**: Implement SPEC-11 API performance optimizations
+  ([`5da97e4`](https://github.com/basicmachines-co/basic-memory/commit/5da97e482052907d68a2a3604e255c3f2c42c5ed))
+  - Comprehensive API performance improvements
+  - Optimized database queries and response times
+
+- **#314**: Integrate ignore_utils to skip .gitignored files in sync process
+  ([`33ee1e0`](https://github.com/basicmachines-co/basic-memory/commit/33ee1e0831d2060587de2c9886e74ff111b04583))
+  - Respect .gitignore patterns during file synchronization
+  - Prevent syncing build artifacts and temporary files
+
+- **#313**: Add disable_permalinks config flag
+  ([`9035913`](https://github.com/basicmachines-co/basic-memory/commit/903591384dffeba9996a18463818bdb8b28ca03e))
+  - Optional permalink generation for users who don't need them
+  - Improves flexibility for different knowledge management workflows
+
+- **#306**: Implement cloud mount CLI commands for local file access
+  ([`2c5c606`](https://github.com/basicmachines-co/basic-memory/commit/2c5c606a394ab994334c8fd307b30370037bbf39))
+  - Mount cloud files locally using rclone for real-time editing
+  - Three performance profiles: fast (5s), balanced (10-15s), safe (15s+)
+  - Cross-platform rclone installer with package manager fallbacks
+
+- **#305**: ChatGPT tools for search and fetch
+  ([`f40ab31`](https://github.com/basicmachines-co/basic-memory/commit/f40ab31685a9510a07f5d87bf24436c0df80680f))
+  - Add ChatGPT-specific search and fetch tools
+  - Expand AI assistant integration options
+
+- **#298**: Implement SPEC-6 Stateless Architecture for MCP Tools
+  ([`a1d7792`](https://github.com/basicmachines-co/basic-memory/commit/a1d7792bdb6f71c4943b861d1c237f6ac7021247))
+  - Redesign MCP tools for stateless operation
+  - Enable cloud deployment with better scalability
+
+- **#296**: Basic Memory cloud upload
+  ([`e0d8aeb`](https://github.com/basicmachines-co/basic-memory/commit/e0d8aeb14913f3471b9716d0c60c61adb1d74687))
+  - Implement file upload capabilities for cloud storage
+  - Foundation for cloud-hosted Basic Memory instances
+
+- **#291**: Merge Cloud auth
+  ([`3a6baf8`](https://github.com/basicmachines-co/basic-memory/commit/3a6baf80fc6012e9434e06b1605f9a8b198d8688))
+  - OAuth 2.1 authentication with Supabase integration
+  - JWT-based tenant isolation for multi-user cloud deployments
+
+### Platform & Infrastructure
+
+- **#331**: Add Python 3.13 to test matrix
+  ([`16d7edd`](https://github.com/basicmachines-co/basic-memory/commit/16d7eddbf704abfe53373663e80d05ecdde15aa7))
+  - Ensure compatibility with latest Python version
+  - Expand CI/CD testing coverage
+
+- **#316**: Enable WAL mode and add Windows-specific SQLite optimizations
+  ([`c83d567`](https://github.com/basicmachines-co/basic-memory/commit/c83d567917267bb3d52708f4b38d2daf36c1f135))
+  - Enable Write-Ahead Logging for better concurrency
+  - Platform-specific SQLite optimizations for Windows users
+
+- **#320**: Rework lifecycle management to optimize cloud deployment
+  ([`ea2e93d`](https://github.com/basicmachines-co/basic-memory/commit/ea2e93d9265bfa366d2d3796f99f579ab2aed48c))
+  - Optimize application lifecycle for cloud environments
+  - Improve startup time and resource management
+
+- **#319**: Resolve entity relations in background to prevent cold start blocking
+  ([`324844a`](https://github.com/basicmachines-co/basic-memory/commit/324844a670d874410c634db520a68c09149045ea))
+  - Move relation resolution to background processing
+  - Faster MCP server cold starts
+
+- **#318**: Enforce minimum 1-day timeframe for recent_activity
+  ([`f818702`](https://github.com/basicmachines-co/basic-memory/commit/f818702ab7f8d2d706178e7b0ed3467501c9c4a2))
+  - Fix timezone-related issues in recent activity queries
+  - Ensure consistent behavior across time zones
+
+- **#317**: Critical cloud deployment fixes for MCP stability
+  ([`2efd8f4`](https://github.com/basicmachines-co/basic-memory/commit/2efd8f44e2d0259079ed5105fea34308875c0e10))
+  - Multiple stability improvements for cloud-hosted MCP servers
+  - Enhanced error handling and recovery
+
+### Technical Improvements
+
+- **Comprehensive Testing** - Extensive test coverage for critical fixes
+  - New permalink collision test suite with 4 MCP-level integration tests
+  - Entity service test coverage expanded to reproduce fuzzy search bug
+  - Manual testing verification of data loss prevention
+  - All 55 entity service tests passing with new strict resolution
+
+- **Windows Support Enhancements**
+  ([`7a8b08d`](https://github.com/basicmachines-co/basic-memory/commit/7a8b08d11ee627b54af6f5ea7ab4ef9fcd8cf4ed),
+   [`9aa4024`](https://github.com/basicmachines-co/basic-memory/commit/9aa40246a8ad1c3cef82b32e1ca7ce8ea23e1e05))
+  - Fix Windows test failures and add Windows CI support
+  - Address platform-specific issues for Windows users
+  - Enhanced cross-platform compatibility
+
+- **Docker Improvements**
+  ([`105bcaa`](https://github.com/basicmachines-co/basic-memory/commit/105bcaa025576a06f889183baded6c18f3782696))
+  - Implement non-root Docker container to fix file ownership issues
+  - Improved security and compatibility in containerized deployments
+
+- **Code Quality**
+  - Enhanced filename sanitization with optional kebab case support
+  - Improved character conflict detection for sync operations
+  - Better error handling across the codebase
+  - Path traversal security vulnerability fixes
+
+### Documentation
+
+- **#321**: Corrected dead links in README
+  ([`fc38877`](https://github.com/basicmachines-co/basic-memory/commit/fc38877008cd8c762116f7ff4b2573495b4e5c0f))
+  - Fix broken documentation links
+  - Improve navigation and accessibility
+
+- **#308**: Update Claude Code GitHub Workflow
+  ([`8c7e29e`](https://github.com/basicmachines-co/basic-memory/commit/8c7e29e325f36a67bdefe8811637493bef4bbf56))
+  - Enhanced GitHub integration documentation
+  - Better Claude Code collaboration workflow
+
+### Breaking Changes
+
+**None** - This release maintains full backward compatibility with v0.14.x
+
+All changes are either:
+- Bug fixes that correct unintended behavior
+- New optional features that don't affect existing functionality
+- Internal optimizations that are transparent to users
+
+### Migration Guide
+
+No manual migration required. Upgrade with:
+
+```bash
+# Update via uv
+uv tool upgrade basic-memory
+
+# Or install fresh
+uv tool install basic-memory
+```
+
+**What's Fixed:**
+- Data loss bug from permalink collisions is completely resolved
+- Cloud deployment stability significantly improved
+- Windows platform compatibility enhanced
+- Better performance across all operations
+
+**What's New:**
+- Cloud sync capabilities via rclone
+- Subscription validation foundation
+- Python 3.13 support
+- Enhanced security and stability
+
+### Installation
+
+```bash
+# Latest stable release
+uv tool install basic-memory
+
+# Update existing installation
+uv tool upgrade basic-memory
+
+# Docker
+docker pull ghcr.io/basicmachines-co/basic-memory:v0.15.0
+```
+
 ## v0.14.2 (2025-07-03)
 
 ### Bug Fixes
@@ -1356,4 +2006,4 @@ Co-authored-by: phernandez <phernandez@basicmachines.co>
 ### Chores
 
 - Remove basic-foundation src ref in pyproject.toml
-  ([`29fce8b`](https://github.com/basicmachines-co/basic-memory/commit/29fce8b0b922d54d7799bf2534107ee6cfb961b8))
+  ([`29fce8b`](https://github.com/basicmachines-co/basic-memory/commit/29fce8b0b922d54d7799bf2534107ee6cfb961b8))

CLAUDE.md

@@ -14,20 +14,34 @@ See the [README.md](README.md) file for a project overview.
 
 ### Build and Test Commands
 
-- Install: `make install` or `pip install -e ".[dev]"`
-- Run tests: `uv run pytest -p pytest_mock -v` or `make test`
+- Install: `just install` or `pip install -e ".[dev]"`
+- Run all tests (with coverage): `just test` - Runs both unit and integration tests with unified coverage
+- Run unit tests only: `just test-unit` - Fast, no coverage
+- Run integration tests only: `just test-int` - Fast, no coverage
+- Generate HTML coverage: `just coverage` - Opens in browser
 - Single test: `pytest tests/path/to/test_file.py::test_function_name`
-- Lint: `make lint` or `ruff check . --fix`
-- Type check: `make type-check` or `uv run pyright`
-- Format: `make format` or `uv run ruff format .`
-- Run all code checks: `make check` (runs lint, format, type-check, test)
-- Create db migration: `make migration m="Your migration message"`
-- Run development MCP Inspector: `make run-inspector`
+- Run benchmarks: `pytest test-int/test_sync_performance_benchmark.py -v -m "benchmark and not slow"`
+- Lint: `just lint` or `ruff check . --fix`
+- Type check: `just typecheck` or `uv run pyright`
+- Format: `just format` or `uv run ruff format .`
+- Run all code checks: `just check` (runs lint, format, typecheck, test)
+- Create db migration: `just migration "Your migration message"`
+- Run development MCP Inspector: `just run-inspector`
+
+**Note:** Project requires Python 3.12+ (uses type parameter syntax and `type` aliases introduced in 3.12)
+
+### Test Structure
+
+- `tests/` - Unit tests for individual components (mocked, fast)
+- `test-int/` - Integration tests for real-world scenarios (no mocks, realistic)
+- Both directories are covered by unified coverage reporting
+- Benchmark tests in `test-int/` are marked with `@pytest.mark.benchmark`
+- Slow tests are marked with `@pytest.mark.slow`
 
 ### Code Style Guidelines
 
 - Line length: 100 characters max
-- Python 3.12+ with full type annotations
+- Python 3.12+ with full type annotations (uses type parameters and type aliases)
 - Format with ruff (consistent styling)
 - Import order: standard lib, third-party, local imports
 - Naming: snake_case for functions/variables, PascalCase for classes
@@ -61,9 +75,46 @@ See the [README.md](README.md) file for a project overview.
 - Schema changes require Alembic migrations
 - SQLite is used for indexing and full text search, files are source of truth
 - Testing uses pytest with asyncio support (strict mode)
+- Unit tests (`tests/`) use mocks when necessary; integration tests (`test-int/`) use real implementations
 - Test database uses in-memory SQLite
-- Avoid creating mocks in tests in most circumstances.
-- Each test runs in a standalone environment with in memory SQLite and tmp_file directory
+- Each test runs in a standalone environment with in-memory SQLite and tmp_file directory
+- Performance benchmarks are in `test-int/test_sync_performance_benchmark.py`
+- Use pytest markers: `@pytest.mark.benchmark` for benchmarks, `@pytest.mark.slow` for slow tests
+
+### Async Client Pattern (Important!)
+
+**All MCP tools and CLI commands use the context manager pattern for HTTP clients:**
+
+```python
+from basic_memory.mcp.async_client import get_client
+
+async def my_mcp_tool():
+    async with get_client() as client:
+        # Use client for API calls
+        response = await call_get(client, "/path")
+        return response
+```
+
+**Do NOT use:**
+- ❌ `from basic_memory.mcp.async_client import client` (deprecated module-level client)
+- ❌ Manual auth header management
+- ❌ `inject_auth_header()` (deleted)
+
+**Key principles:**
+- Auth happens at client creation, not per-request
+- Proper resource management via context managers
+- Supports three modes: Local (ASGI), CLI cloud (HTTP + auth), Cloud app (factory injection)
+- Factory pattern enables dependency injection for cloud consolidation
+
+**For cloud app integration:**
+```python
+from basic_memory.mcp import async_client
+
+# Set custom factory before importing tools
+async_client.set_client_factory(your_custom_factory)
+```
+
+See SPEC-16 for full context manager refactor details.
 
 ## BASIC MEMORY PRODUCT USAGE
 
@@ -80,6 +131,7 @@ See the [README.md](README.md) file for a project overview.
 
 ### Basic Memory Commands
 
+**Local Commands:**
 - Sync knowledge: `basic-memory sync` or `basic-memory sync --watch`
 - Import from Claude: `basic-memory import claude conversations`
 - Import from ChatGPT: `basic-memory import chatgpt`
@@ -89,24 +141,41 @@ See the [README.md](README.md) file for a project overview.
     - Guide: `basic-memory tools basic-memory-guide`
     - Continue: `basic-memory tools continue-conversation --topic="search"`
 
+**Cloud Commands (requires subscription):**
+- Authenticate: `basic-memory cloud login`
+- Logout: `basic-memory cloud logout`
+- Bidirectional sync: `basic-memory cloud sync`
+- Integrity check: `basic-memory cloud check`
+- Mount cloud storage: `basic-memory cloud mount`
+- Unmount cloud storage: `basic-memory cloud unmount`
+
 ### MCP Capabilities
 
 - Basic Memory exposes these MCP tools to LLMs:
 
   **Content Management:**
     - `write_note(title, content, folder, tags)` - Create/update markdown notes with semantic observations and relations
-    - `read_note(identifier, page, page_size)` - Read notes by title, permalink, or memory:// URL with knowledge graph
-      awareness
-    - `read_file(path)` - Read raw file content (text, images, binaries) without knowledge graph processing
+    - `read_note(identifier, page, page_size)` - Read notes by title, permalink, or memory:// URL with knowledge graph awareness
+    - `read_content(path)` - Read raw file content (text, images, binaries) without knowledge graph processing
+    - `view_note(identifier, page, page_size)` - View notes as formatted artifacts for better readability
+    - `edit_note(identifier, operation, content)` - Edit notes incrementally (append, prepend, find/replace, replace_section)
+    - `move_note(identifier, destination_path)` - Move notes to new locations, updating database and maintaining links
+    - `delete_note(identifier)` - Delete notes from the knowledge base
 
   **Knowledge Graph Navigation:**
-    - `build_context(url, depth, timeframe)` - Navigate the knowledge graph via memory:// URLs for conversation
-      continuity
-    - `recent_activity(type, depth, timeframe)` - Get recently updated information with specified timeframe (e.g., "
-      1d", "1 week")
+    - `build_context(url, depth, timeframe)` - Navigate the knowledge graph via memory:// URLs for conversation continuity
+    - `recent_activity(type, depth, timeframe)` - Get recently updated information with specified timeframe (e.g., "1d", "1 week")
+    - `list_directory(dir_name, depth, file_name_glob)` - Browse directory contents with filtering and depth control
 
   **Search & Discovery:**
-    - `search(query, page, page_size)` - Full-text search across all content with filtering options
+    - `search_notes(query, page, page_size, search_type, types, entity_types, after_date)` - Full-text search across all content with advanced filtering options
+
+  **Project Management:**
+    - `list_memory_projects()` - List all available projects with their status
+    - `create_memory_project(project_name, project_path, set_default)` - Create new Basic Memory projects
+    - `delete_project(project_name)` - Delete a project from configuration
+    - `get_current_project()` - Get current project information and stats
+    - `sync_status()` - Check file synchronization and background operation status
 
   **Visualization:**
     - `canvas(nodes, edges, title, folder)` - Generate Obsidian canvas files for knowledge graph visualization
@@ -118,6 +187,34 @@ See the [README.md](README.md) file for a project overview.
     - `recent_activity(timeframe)` - View recently changed items with formatted output
     - `json_canvas_spec()` - Full JSON Canvas specification for Obsidian visualization
 
+### Cloud Features (v0.15.0+)
+
+Basic Memory now supports cloud synchronization and storage (requires active subscription):
+
+**Authentication:**
+- JWT-based authentication with subscription validation
+- Secure session management with token refresh
+- Support for multiple cloud projects
+
+**Bidirectional Sync:**
+- rclone bisync integration for two-way synchronization
+- Conflict resolution and integrity verification
+- Real-time sync with change detection
+- Mount/unmount cloud storage for direct file access
+
+**Cloud Project Management:**
+- Create and manage projects in the cloud
+- Toggle between local and cloud modes
+- Per-project sync configuration
+- Subscription-based access control
+
+**Security & Performance:**
+- Removed .env file loading for improved security
+- .gitignore integration (respects gitignored files)
+- WAL mode for SQLite performance
+- Background relation resolution (non-blocking startup)
+- API performance optimizations (SPEC-11)
+
 ## AI-Human Collaborative Development
 
 Basic Memory emerged from and enables a new kind of development process that combines human and AI capabilities. Instead
@@ -168,4 +265,4 @@ With GitHub integration, the development workflow includes:
 3. **Branch management** - Claude can create feature branches for implementations
 4. **Documentation maintenance** - Claude can keep documentation updated as the code evolves
 
-This level of integration represents a new paradigm in AI-human collaboration, where the AI assistant becomes a full-fledged team member rather than just a tool for generating code snippets.
+This level of integration represents a new paradigm in AI-human collaboration, where the AI assistant becomes a full-fledged team member rather than just a tool for generating code snippets.

CONTRIBUTING.md

@@ -34,11 +34,18 @@ project and how to get started as a developer.
 
 4. **Run the Tests**:
    ```bash
-   # Run all tests
+   # Run all tests with unified coverage (unit + integration)
    just test
-   # or
-   uv run pytest -p pytest_mock -v
-   
+
+   # Run unit tests only (fast, no coverage)
+   just test-unit
+
+   # Run integration tests only (fast, no coverage)
+   just test-int
+
+   # Generate HTML coverage report
+   just coverage
+
    # Run a specific test
    pytest tests/path/to/test_file.py::test_function_name
    ```
@@ -134,7 +141,7 @@ agreement to the DCO.
 
 ## Code Style Guidelines
 
-- **Python Version**: Python 3.12+ with full type annotations
+- **Python Version**: Python 3.12+ with full type annotations (3.12+ required for type parameter syntax)
 - **Line Length**: 100 characters maximum
 - **Formatting**: Use ruff for consistent styling
 - **Import Order**: Standard lib, third-party, local imports
@@ -144,12 +151,78 @@ agreement to the DCO.
 
 ## Testing Guidelines
 
-- **Coverage Target**: We aim for 100% test coverage for all code
+### Test Structure
+
+Basic Memory uses two test directories with unified coverage reporting:
+
+- **`tests/`**: Unit tests that test individual components in isolation
+  - Fast execution with extensive mocking
+  - Test individual functions, classes, and modules
+  - Run with: `just test-unit` (no coverage, fast)
+
+- **`test-int/`**: Integration tests that test real-world scenarios
+  - Test full workflows with real database and file operations
+  - Include performance benchmarks
+  - More realistic but slower than unit tests
+  - Run with: `just test-int` (no coverage, fast)
+
+### Running Tests
+
+```bash
+# Run all tests with unified coverage report
+just test
+
+# Run only unit tests (fast iteration)
+just test-unit
+
+# Run only integration tests
+just test-int
+
+# Generate HTML coverage report
+just coverage
+
+# Run specific test
+pytest tests/path/to/test_file.py::test_function_name
+
+# Run tests excluding benchmarks
+pytest -m "not benchmark"
+
+# Run only benchmark tests
+pytest -m benchmark test-int/test_sync_performance_benchmark.py
+```
+
+### Performance Benchmarks
+
+The `test-int/test_sync_performance_benchmark.py` file contains performance benchmarks that measure sync and indexing speed:
+
+- `test_benchmark_sync_100_files` - Small repository performance
+- `test_benchmark_sync_500_files` - Medium repository performance
+- `test_benchmark_sync_1000_files` - Large repository performance (marked slow)
+- `test_benchmark_resync_no_changes` - Re-sync performance baseline
+
+Run benchmarks with:
+```bash
+# Run all benchmarks (excluding slow ones)
+pytest test-int/test_sync_performance_benchmark.py -v -m "benchmark and not slow"
+
+# Run all benchmarks including slow ones
+pytest test-int/test_sync_performance_benchmark.py -v -m benchmark
+
+# Run specific benchmark
+pytest test-int/test_sync_performance_benchmark.py::test_benchmark_sync_100_files -v
+```
+
+See `test-int/BENCHMARKS.md` for detailed benchmark documentation.
+
+### Testing Best Practices
+
+- **Coverage Target**: We aim for high test coverage for all code
 - **Test Framework**: Use pytest for unit and integration tests
-- **Mocking**: Use pytest-mock for mocking dependencies only when necessary
+- **Mocking**: Avoid mocking in integration tests; use sparingly in unit tests
 - **Edge Cases**: Test both normal operation and edge cases
 - **Database Testing**: Use in-memory SQLite for testing database operations
 - **Fixtures**: Use async pytest fixtures for setup and teardown
+- **Markers**: Use `@pytest.mark.benchmark` for benchmarks, `@pytest.mark.slow` for slow tests
 
 ## Release Process
 

Dockerfile

@@ -24,11 +24,12 @@ WORKDIR /app
 RUN uv sync --locked
 
 # Create necessary directories and set ownership
-RUN mkdir -p /app/data /app/.basic-memory && \
+RUN mkdir -p /app/data/basic-memory /app/.basic-memory && \
     chown -R appuser:${GID} /app
 
 # Set default data directory and add venv to PATH
-ENV BASIC_MEMORY_HOME=/app/data \
+ENV BASIC_MEMORY_HOME=/app/data/basic-memory \
+    BASIC_MEMORY_PROJECT_ROOT=/app/data \
     PATH="/app/.venv/bin:$PATH"
 
 # Switch to the non-root user

LEGAL_INVENTORY_GUIDE.md

@@ -1,250 +0,0 @@
-# Legal File Inventory Guide
-
-## Overview
-
-This guide documents the comprehensive file inventory script created for Basic Memory's legal documentation needs, including copyright assignments and company agreement exhibits.
-
-## Repository Analysis Summary
-
-### Repository Structure
-- **Primary Language**: Python (3,958 files)
-- **License**: GNU Affero General Public License v3.0
-- **Total Contributors**: 12 identified contributors
-- **Main Contributors**:
-  - `phernandez@basicmachines.co` / `paul@basicmachines.co` (Paul Hernandez) - 700+ commits
-  - `groksrc@gmail.com` / `groksrc@users.noreply.github.com` (Drew Cain) - 18+ commits
-  - Various AI bots and automated systems
-
-### File Type Distribution
-Based on the analysis, the repository contains:
-
-| Extension | Count | Purpose |
-|-----------|-------|---------|
-| `.py` | 3,958 | Python source code |
-| `.pyi` | 4,536 | Python type stubs (dependencies) |
-| `.pyc` | 1,435 | Compiled Python (excluded from inventory) |
-| `.md` | 34 | Documentation files |
-| `.toml` | 179 | Configuration files |
-| `.html` | 119 | Coverage reports and documentation |
-| `.txt` | 127 | Various text files |
-
-### Contributors by Email Domain
-
-**Basic Machines Contributors:**
-- `phernandez@basicmachines.co` - 547 commits (Primary maintainer)
-- `paul@basicmachines.co` / `paulmh@gmail.com` - 170 commits (Paul Hernandez)
-- `claude@basicmachines.co` - 3 commits (AI assistant)
-
-**External Contributors:**
-- `groksrc@gmail.com` / `groksrc@users.noreply.github.com` - 18 commits (Drew Cain)
-- Various one-time contributors (1-2 commits each)
-
-**Automated Systems:**
-- GitHub Actions, semantic-release, and other bots
-
-## Legal Inventory Script Features
-
-### What It Includes
-
-**Source Files:**
-- All Python source code (`.py` files)
-- Configuration files (`.toml`, `.yaml`, `.json`, etc.)
-- Documentation (`.md`, `.rst`, `.txt`)
-- Build and deployment scripts
-- Database migrations and SQL files
-- Legal and license files
-
-**Metadata for Each File:**
-- File path, size, and creation/modification dates
-- Git history (creation date, last modified, commit count)
-- Contributors and their line contributions
-- Primary author identification
-- File categorization
-- SHA-256 hash for integrity verification
-
-### What It Excludes
-
-**Generated/Build Artifacts:**
-- `__pycache__/` and `.pyc` files
-- Build directories (`build/`, `dist/`, `htmlcov/`)
-- Coverage reports and cache files
-
-**Dependencies:**
-- Virtual environment files (`.venv/`, `venv/`)
-- Third-party packages (`site-packages/`, `*.dist-info/`)
-- Lock files (`uv.lock`, `package-lock.json`)
-
-**IDE/Editor Files:**
-- `.idea/`, `.vscode/`, `.DS_Store`
-- Temporary and swap files
-
-**Version Control:**
-- `.git/` directory contents
-- Git configuration files
-
-## Usage Instructions
-
-### Basic Usage
-
-```bash
-# Generate CSV inventory (default)
-python3 legal_file_inventory.py
-
-# Generate Markdown report
-python3 legal_file_inventory.py --format markdown --output legal_report.md
-
-# Generate JSON with full metadata
-python3 legal_file_inventory.py --format json --output legal_data.json
-
-# Specify different repository path
-python3 legal_file_inventory.py --repo-path /path/to/repo --output inventory.csv
-```
-
-### Command Line Options
-
-- `--output`, `-o`: Output file path (default: `basic_memory_legal_inventory.csv`)
-- `--format`, `-f`: Output format - `csv`, `json`, or `markdown` (default: `csv`)
-- `--repo-path`, `-r`: Repository path (default: current directory)
-
-### Output Formats
-
-**CSV Format:**
-- Suitable for spreadsheet applications
-- Contains all metadata fields
-- Contributors stored as JSON string in separate column
-
-**JSON Format:**
-- Complete structured data
-- Includes summary statistics and detailed file information
-- Best for programmatic processing
-
-**Markdown Format:**
-- Human-readable report
-- Summary statistics and contributor rankings
-- Detailed table of all files
-
-## Legal Documentation Applications
-
-### Copyright Assignment Use Cases
-
-1. **Contributor Identification**: The script identifies all contributors to each file based on git blame analysis
-2. **Primary Author Recognition**: Determines the primary author of each file (contributor with most lines)
-3. **Contribution Metrics**: Provides line counts and commit counts per contributor
-4. **File Categorization**: Groups files by purpose (source code, documentation, configuration, etc.)
-
-### Company Agreement Exhibits
-
-The inventory provides comprehensive documentation of:
-
-1. **Intellectual Property Scope**: All source code files and their origins
-2. **Contributor Tracking**: Complete list of all individuals who have contributed code
-3. **File Integrity**: SHA-256 hashes for verification of file contents
-4. **Historical Documentation**: Git creation dates and modification history
-
-### Due Diligence Documentation
-
-The script generates data suitable for:
-
-1. **Legal Review**: Comprehensive file listing with contributor information
-2. **IP Audit**: Identification of all copyright holders
-3. **License Compliance**: Verification of file ownership and licensing
-4. **Asset Documentation**: Complete inventory of company code assets
-
-## Integration with Legal Processes
-
-### Recommended Workflow
-
-1. **Generate Inventory**: Run the script to create current file inventory
-2. **Legal Review**: Have legal counsel review the contributor list and file categorization
-3. **Copyright Assignment**: Use contributor data to ensure proper copyright assignments
-4. **Document Attachment**: Include inventory as exhibit in company agreements
-5. **Regular Updates**: Re-run inventory for significant releases or legal milestones
-
-### Key Legal Considerations
-
-**AGPL-3.0 License:**
-- All files are under AGPL-3.0 unless otherwise specified
-- Contributors retain copyright but license under AGPL-3.0 terms
-- Company needs proper copyright assignments for proprietary licensing
-
-**Contributor Rights:**
-- External contributors may retain rights to their contributions
-- Proper contributor license agreements (CLAs) should be in place
-- AI-generated content may have different legal status
-
-**File Categories for Legal Review:**
-- **Source Code**: Core IP, requires copyright assignment
-- **Configuration**: May contain proprietary deployment information
-- **Documentation**: Usually less sensitive but may contain trade secrets
-- **Legal/License**: Critical for compliance verification
-
-## Maintenance and Updates
-
-### When to Regenerate Inventory
-
-- Before major releases
-- During legal document preparation
-- After significant contributor additions
-- For annual compliance reviews
-- During acquisition or investment processes
-
-### Validation Steps
-
-1. Verify contributor email mapping is accurate
-2. Check that file categorization makes sense
-3. Ensure excluded files are appropriate
-4. Review contributor counts against expectations
-5. Validate file hashes for integrity
-
-## Technical Implementation Notes
-
-### Git Integration
-- Uses `git blame --line-porcelain` for detailed contributor analysis
-- Tracks file history with `git log --follow`
-- Handles renamed files and complex git histories
-
-### Performance Considerations
-- Scans repository incrementally to handle large codebases
-- Excludes binary dependencies to reduce processing time
-- Caches git operations where possible
-
-### Error Handling
-- Gracefully handles files not in git
-- Continues processing if individual files fail
-- Provides detailed error reporting
-
-## Security and Privacy
-
-### Data Sensitivity
-- Contains contributor names and email addresses
-- May reveal internal file structure and organization
-- Should be treated as confidential legal documentation
-
-### Recommended Handling
-- Limit access to legal and executive team
-- Store in secure, access-controlled systems
-- Consider redacting contributor emails for external sharing
-- Regular cleanup of generated inventory files
-
-## Troubleshooting
-
-### Common Issues
-
-**Git Not Available:**
-- Ensure git is installed and repository is initialized
-- Check that the script is run from within the repository
-
-**Permission Errors:**
-- Ensure read access to all repository files
-- Check write permissions for output directory
-
-**Large Repository Performance:**
-- Consider running on subsets of files for very large repositories
-- Use `--repo-path` to target specific subdirectories
-
-**Contributor Mapping Issues:**
-- Git usernames may not match real identities
-- Consider post-processing to normalize contributor names
-- Review .mailmap files for git identity consolidation
-
-This comprehensive legal file inventory system provides the foundation for proper intellectual property documentation and legal compliance for the Basic Memory project.

README.md

@@ -7,6 +7,16 @@
 ![](https://badge.mcpx.dev?type=dev 'MCP Dev')
 [![smithery badge](https://smithery.ai/badge/@basicmachines-co/basic-memory)](https://smithery.ai/server/@basicmachines-co/basic-memory)
 
+## 🚀 Basic Memory Cloud is Live!
+
+- **Cross-device and multi-platform support is here.** Your knowledge graph now works on desktop, web, and mobile - seamlessly synced across all your AI tools (Claude, ChatGPT, Gemini, Claude Code, and Codex) 
+- **Early Supporter Pricing:** Early users get 25% off forever. 
+The open source project continues as always. Cloud just makes it work everywhere.
+
+[Sign up now →](https://basicmemory.com/beta)
+
+with a 7 day free trial
+
 # Basic Memory
 
 Basic Memory lets you build persistent knowledge through natural conversations with Large Language Models (LLMs) like
@@ -100,6 +110,9 @@ With Basic Memory, you can:
 - Keep everything local and under your control
 - Use familiar tools like Obsidian to view and edit notes
 - Build a personal knowledge base that grows over time
+- Sync your knowledge to the cloud with bidirectional synchronization
+- Authenticate and manage cloud projects with subscription validation
+- Mount cloud storage for direct file access
 
 ## How It Works in Practice
 
@@ -346,14 +359,57 @@ basic-memory sync
 basic-memory sync --watch
 ```
 
-3. In Claude Desktop, the LLM can now use these tools:
+3. Cloud features (optional, requires subscription):
 
+```bash
+# Authenticate with cloud
+basic-memory cloud login
+
+# Bidirectional sync with cloud
+basic-memory cloud sync
+
+# Verify cloud integrity
+basic-memory cloud check
+
+# Mount cloud storage
+basic-memory cloud mount
+```
+
+4. In Claude Desktop, the LLM can now use these tools:
+
+**Content Management:**
 ```
 write_note(title, content, folder, tags) - Create or update notes
 read_note(identifier, page, page_size) - Read notes by title or permalink
+read_content(path) - Read raw file content (text, images, binaries)
+view_note(identifier) - View notes as formatted artifacts
+edit_note(identifier, operation, content) - Edit notes incrementally
+move_note(identifier, destination_path) - Move notes with database consistency
+delete_note(identifier) - Delete notes from knowledge base
+```
+
+**Knowledge Graph Navigation:**
+```
 build_context(url, depth, timeframe) - Navigate knowledge graph via memory:// URLs
-search(query, page, page_size) - Search across your knowledge base
 recent_activity(type, depth, timeframe) - Find recently updated information
+list_directory(dir_name, depth) - Browse directory contents with filtering
+```
+
+**Search & Discovery:**
+```
+search(query, page, page_size) - Search across your knowledge base
+```
+
+**Project Management:**
+```
+list_memory_projects() - List all available projects
+create_memory_project(project_name, project_path) - Create new projects
+get_current_project() - Show current project stats
+sync_status() - Check synchronization status
+```
+
+**Visualization:**
+```
 canvas(nodes, edges, title, folder) - Generate knowledge visualizations
 ```
 
@@ -371,10 +427,11 @@ canvas(nodes, edges, title, folder) - Generate knowledge visualizations
 
 See the [Documentation](https://memory.basicmachines.co/) for more info, including:
 
-- [Complete User Guide](https://memory.basicmachines.co/docs/user-guide)
-- [CLI tools](https://memory.basicmachines.co/docs/cli-reference)
-- [Managing multiple Projects](https://memory.basicmachines.co/docs/cli-reference#project)
-- [Importing data from OpenAI/Claude Projects](https://memory.basicmachines.co/docs/cli-reference#import)
+- [Complete User Guide](https://docs.basicmemory.com/user-guide/)
+- [CLI tools](https://docs.basicmemory.com/guides/cli-reference/)
+- [Cloud CLI and Sync](https://docs.basicmemory.com/guides/cloud-cli/)
+- [Managing multiple Projects](https://docs.basicmemory.com/guides/cli-reference/#project)
+- [Importing data from OpenAI/Claude Projects](https://docs.basicmemory.com/guides/cli-reference/#import)
 
 ## License
 
@@ -393,4 +450,4 @@ and submitting PRs.
  </picture>
 </a>
 
-Built with ♥️ by Basic Machines
+Built with ♥️ by Basic Machines

create_csv_exhibits.py

@@ -1,88 +0,0 @@
-#!/usr/bin/env python3
-"""
-Create CSV exhibits for individual contributors
-"""
-
-import json
-import csv
-from pathlib import Path
-
-def create_csv_exhibits():
-    """Create CSV Exhibit A files for each contributor."""
-    
-    # Read the JSON inventory
-    inventory_files = list(Path("legal_inventory_main").glob("*.json"))
-    if not inventory_files:
-        print("Error: No JSON inventory files found")
-        return
-    
-    inventory_file = inventory_files[0]  # Use the most recent one
-    print(f"Using inventory file: {inventory_file}")
-    
-    with open(inventory_file, 'r') as f:
-        data = json.load(f)
-    
-    files = data['files']
-    
-    # Create output directory
-    output_dir = Path("legal_exhibits")
-    output_dir.mkdir(exist_ok=True)
-    
-    # Contributors we need exhibits for
-    target_contributors = {
-        'jope-bm': 'joe_exhibit_a.csv',
-        'Drew Cain': 'drew_cain_exhibit_a.csv'
-    }
-    
-    print("Creating CSV exhibits for contributors...")
-    
-    for contributor_key, filename in target_contributors.items():
-        # Find files for this contributor
-        contributor_files = []
-        
-        for file_info in files:
-            # Check if this contributor is listed in the file's contributors
-            for contrib in file_info.get('contributors', []):
-                if contributor_key in contrib['name']:
-                    contributor_files.append(file_info)
-                    break
-        
-        if not contributor_files:
-            print(f"No files found for {contributor_key}")
-            continue
-        
-        # Sort files by path
-        contributor_files.sort(key=lambda x: x['path'])
-        
-        # Create CSV file
-        csv_file = output_dir / filename
-        
-        with open(csv_file, 'w', newline='', encoding='utf-8') as csvfile:
-            fieldnames = [
-                'file_path', 'file_name', 'category', 'size_bytes', 
-                'modified_date', 'primary_author', 'all_contributors', 'sha256_hash'
-            ]
-            
-            writer = csv.DictWriter(csvfile, fieldnames=fieldnames)
-            writer.writeheader()
-            
-            for file_info in contributor_files:
-                contributors_list = '; '.join([c['name'] for c in file_info['contributors']])
-                
-                writer.writerow({
-                    'file_path': file_info['path'],
-                    'file_name': file_info['name'],
-                    'category': file_info['category'],
-                    'size_bytes': file_info['size_bytes'],
-                    'modified_date': file_info['modified_time'][:10],
-                    'primary_author': file_info['primary_author'],
-                    'all_contributors': contributors_list,
-                    'sha256_hash': file_info['sha256_hash']
-                })
-        
-        print(f"Created CSV exhibit for {contributor_key}: {csv_file}")
-        print(f"  - {len(contributor_files)} files")
-        print(f"  - {sum(f['size_bytes'] for f in contributor_files):,} bytes")
-
-if __name__ == '__main__':
-    create_csv_exhibits()

create_individual_exhibits.py

@@ -1,208 +0,0 @@
-#!/usr/bin/env python3
-"""
-Create individual Exhibit A files for copyright assignments
-"""
-
-import json
-from pathlib import Path
-from datetime import datetime
-
-def create_individual_exhibits():
-    """Create individual Exhibit A files for each contributor."""
-    
-    # Read the JSON inventory
-    inventory_file = Path("legal_inventory_main/basic_memory_inventory_20250730_101521.json")
-    
-    if not inventory_file.exists():
-        print(f"Error: {inventory_file} not found")
-        return
-    
-    with open(inventory_file, 'r') as f:
-        data = json.load(f)
-    
-    files = data['files']
-    
-    # Create output directory
-    output_dir = Path("legal_exhibits")
-    output_dir.mkdir(exist_ok=True)
-    
-    # Contributors we need exhibits for (based on copyright assignments)
-    target_contributors = {
-        'jope-bm': 'Joseph "Joe" [Last Name]',  # Need to get his full name
-        'Drew Cain': 'Drew Cain'
-    }
-    
-    print("Creating individual contributor exhibits...")
-    
-    for contributor_key, full_name in target_contributors.items():
-        # Find files for this contributor
-        contributor_files = []
-        
-        for file_info in files:
-            # Check if this contributor is listed in the file's contributors
-            for contrib in file_info.get('contributors', []):
-                if contributor_key in contrib['name']:
-                    contributor_files.append(file_info)
-                    break
-        
-        if not contributor_files:
-            print(f"No files found for {contributor_key}")
-            continue
-        
-        # Sort files by path
-        contributor_files.sort(key=lambda x: x['path'])
-        
-        # Create exhibit markdown
-        exhibit_content = f"""# Exhibit A - Assigned Works
-## Copyright Assignment: {full_name} to Basic Memory LLC
-
-**Date:** [To be filled]
-**Assignor:** {full_name}
-**Assignee:** Basic Memory LLC
-
-## Summary
-- **Total Files:** {len(contributor_files)}
-- **Total Size:** {sum(f['size_bytes'] for f in contributor_files):,} bytes
-- **Categories:** {', '.join(set(f['category'] for f in contributor_files))}
-
-## Detailed File List
-
-"""
-        
-        # Group by category
-        categories = {}
-        for file_info in contributor_files:
-            category = file_info['category']
-            if category not in categories:
-                categories[category] = []
-            categories[category].append(file_info)
-        
-        # Add files by category
-        for category, category_files in sorted(categories.items()):
-            exhibit_content += f"### {category.replace('_', ' ').title()}\n\n"
-            
-            for file_info in category_files:
-                exhibit_content += f"**{file_info['path']}**\n"
-                exhibit_content += f"- Size: {file_info['size_bytes']:,} bytes\n"
-                exhibit_content += f"- Modified: {file_info['modified_time'][:10]}\n"
-                exhibit_content += f"- Primary Author: {file_info['primary_author']}\n"
-                
-                # Show all contributors for this file
-                if len(file_info['contributors']) > 1:
-                    contributors_list = ', '.join([c['name'] for c in file_info['contributors']])
-                    exhibit_content += f"- All Contributors: {contributors_list}\n"
-                
-                exhibit_content += f"- SHA-256: `{file_info['sha256_hash']}`\n\n"
-        
-        # Add verification section
-        exhibit_content += f"""
-## Verification
-This exhibit lists all files in the Basic Memory repository where {full_name} is identified as a contributor based on git commit history analysis.
-
-**Analysis Date:** {datetime.now().strftime('%Y-%m-%d')}
-**Repository State:** Basic Memory main branch
-**Method:** Git history analysis via `git log --follow` for each file
-
-## Legal Representation
-{full_name} hereby represents and warrants that they are the author of the contributions listed above and have the right to assign copyright in these works to Basic Memory LLC.
-
----
-
-*This exhibit is attached to and forms part of the Copyright Assignment Agreement between {full_name} and Basic Memory LLC.*
-"""
-        
-        # Write exhibit file
-        safe_name = contributor_key.replace(' ', '_').replace('-', '_').lower()
-        exhibit_file = output_dir / f"exhibit_a_{safe_name}.md"
-        
-        with open(exhibit_file, 'w') as f:
-            f.write(exhibit_content)
-        
-        print(f"Created exhibit for {full_name}: {exhibit_file}")
-        print(f"  - {len(contributor_files)} files")
-        print(f"  - {sum(f['size_bytes'] for f in contributor_files):,} bytes")
-    
-    # Create overall summary exhibit (for Paul's assignment to Basic Machines LLC)
-    create_overall_summary_exhibit(data, output_dir)
-
-def create_overall_summary_exhibit(data, output_dir):
-    """Create overall summary exhibit for Company Agreement."""
-    
-    files = data['files']
-    summary = data['summary']
-    contributors = data['contributors']
-    
-    summary_content = f"""# Basic Memory Repository - Complete IP Inventory
-## For Basic Memory LLC Company Agreement
-
-**Analysis Date:** {summary['scan_date'][:10]}
-**Repository:** {summary['repository_path']}
-
-## Executive Summary
-- **Total Files:** {summary['total_files']:,}
-- **Total Size:** {summary['total_size_bytes']:,} bytes
-- **Contributors:** {summary['contributor_count']}
-- **Primary Author:** Paul Hernandez ({len(contributors.get('Paul Hernandez', {}).get('files', []))} files)
-
-## File Categories
-"""
-    
-    for category, count in sorted(summary['categories'].items()):
-        summary_content += f"- **{category.replace('_', ' ').title()}:** {count} files\n"
-    
-    summary_content += """
-
-## Contributor Summary
-"""
-    
-    for contrib in summary['top_contributors']:
-        summary_content += f"- **{contrib['name']}** ({contrib['email']}): {contrib['file_count']} files, {contrib['commit_count']} commits\n"
-    
-    summary_content += """
-
-## Legal Significance
-This inventory represents the complete codebase of Basic Memory as licensed from Basic Machines LLC to Basic Memory LLC under the copyright license agreement dated [DATE].
-
-### IP Rights Chain
-1. **Paul Hernandez** → Basic Machines LLC (copyright assignment)
-2. **Basic Machines LLC** → Basic Memory LLC (15% royalty license)
-3. **Co-founders** → Basic Memory LLC (direct copyright assignments)
-
-### Due Diligence Documentation
-This comprehensive file inventory serves as:
-- **Company Agreement Exhibit:** Original codebase licensed to Basic Memory LLC
-- **Acquisition Documentation:** Complete IP inventory for due diligence
-- **Copyright Verification:** Establishes chain of title for all repository contents
-
-## Repository Contents by Category
-
-"""
-    
-    # Add sample files by category (first 10 in each category)
-    for category in sorted(summary['categories'].keys()):
-        category_files = [f for f in files if f['category'] == category][:10]
-        if category_files:
-            summary_content += f"### {category.replace('_', ' ').title()} (Sample)\n\n"
-            for file_info in category_files:
-                summary_content += f"- `{file_info['path']}` ({file_info['size_bytes']:,} bytes)\n"
-            
-            if len([f for f in files if f['category'] == category]) > 10:
-                remaining = len([f for f in files if f['category'] == category]) - 10
-                summary_content += f"- *... and {remaining} more files*\n"
-            summary_content += "\n"
-    
-    summary_content += f"""
----
-
-*This inventory was generated automatically from git repository analysis and represents the complete intellectual property foundation of Basic Memory as of {summary['scan_date'][:10]}.*
-"""
-    
-    # Write summary file
-    summary_file = output_dir / "basic_memory_complete_inventory.md"
-    with open(summary_file, 'w') as f:
-        f.write(summary_content)
-    
-    print(f"Created complete inventory summary: {summary_file}")
-
-if __name__ == '__main__':
-    create_individual_exhibits()

docs/AI Assistant Guide.md

@@ -1,431 +0,0 @@
----
-title: AI Assistant Guide
-type: note
-permalink: docs/ai-assistant-guide
----
-> Note: This is an optional document that can be copy/pasted into the project knowledge for an LLM to provide a full description of how it can work with Basic Memory. It is provided as a helpful resource. The tools contain extensive usage description prompts with enable the LLM to understand them. 
-
-You can [download](https://github.com/basicmachines-co/basic-memory/blob/main/docs/AI%20Assistant%20Guide.md) the contents of this file from GitHub
-# AI Assistant Guide for Basic Memory
-
-This guide helps you, the AI assistant, use Basic Memory tools effectively when working with users. It covers reading, writing, and navigating knowledge through the Model Context Protocol (MCP).
-
-## Quick Reference
-
-**Essential Tools:**
-- `write_note()` - Create/update notes (primary tool)
-- `read_note()` - Read existing content
-- `search_notes()` - Find information
-- `edit_note()` - Modify existing notes incrementally (v0.13.0)
-- `move_note()` - Organize files with database consistency (v0.13.0)
-
-**Project Management (v0.13.0):**
-- `list_projects()` - Show available projects
-- `switch_project()` - Change active project
-- `get_current_project()` - Current project info
-
-**Key Principles:**
-1. **Build connections** - Rich knowledge graphs > isolated notes
-2. **Ask permission** - "Would you like me to record this?"
-3. **Use exact titles** - For accurate `[[WikiLinks]]`
-4. **Leverage v0.13.0** - Edit incrementally, organize proactively, switch projects contextually
-
-## Overview
-
-Basic Memory allows you and users to record context in local Markdown files, building a rich knowledge base through natural conversations. The system automatically creates a semantic knowledge graph from simple text patterns.
-
-- **Local-First**: All data is stored in plain text files on the user's computer
-- **Real-Time**: Users see content updates immediately
-- **Bi-Directional**: Both you and users can read and edit notes
-- **Semantic**: Simple patterns create a structured knowledge graph
-- **Persistent**: Knowledge persists across sessions and conversations
-
-## The Importance of the Knowledge Graph
-
-Basic Memory's value comes from connections between notes, not just the notes themselves. When writing notes, your primary goal should be creating a rich, interconnected knowledge graph.
-
-When creating content, focus on:
-
-1. **Increasing Semantic Density**: Add multiple observations and relations to each note
-2. **Using Accurate References**: Aim to reference existing entities by their exact titles
-3. **Creating Forward References**: Feel free to reference entities that don't exist yet - Basic Memory will resolve these when they're created later
-4. **Creating Bidirectional Links**: When appropriate, connect entities from both directions
-5. **Using Meaningful Categories**: Add semantic context with appropriate observation categories
-6. **Choosing Precise Relations**: Use specific relation types that convey meaning
-
-Remember that a knowledge graph with 10 heavily connected notes is more valuable than 20 isolated notes. Your job is to help build these connections.
-
-## Core Tools Reference
-
-### Essential Content Management
-
-**Writing knowledge** (most important tool):
-```
-write_note(
-    title="Search Design",
-    content="# Search Design\n...",
-    folder="specs",                     # Optional
-    tags=["search", "design"],          # v0.13.0: now searchable!
-    project="work-notes"                # v0.13.0: target specific project
-)
-```
-
-**Reading knowledge:**
-```
-read_note("Search Design")              # By title
-read_note("specs/search-design")        # By path
-read_note("memory://specs/search")      # By memory URL
-```
-
-**Viewing notes as formatted artifacts (Claude Desktop):**
-```
-view_note("Search Design")              # Creates readable artifact
-view_note("specs/search-design")        # By permalink
-view_note("memory://specs/search")      # By memory URL
-```
-
-**Incremental editing** (v0.13.0):
-```
-edit_note(
-    identifier="Search Design",         # Must be EXACT title/permalink (strict matching)
-    operation="append",                 # append, prepend, find_replace, replace_section
-    content="\n## New Section\nContent here..."
-)
-```
-**⚠️ Important:** `edit_note` requires exact identifiers (no fuzzy matching). Use `search_notes()` first if uncertain.
-
-**File organization** (v0.13.0):
-```
-move_note(
-    identifier="Old Note",              # Must be EXACT title/permalink (strict matching)
-    destination="archive/old-note.md"   # Folders created automatically
-)
-```
-**⚠️ Important:** `move_note` requires exact identifiers (no fuzzy matching). Use `search_notes()` first if uncertain.
-
-### Project Management (v0.13.0)
-
-```
-list_projects()                         # Show available projects
-switch_project("work-notes")            # Change active project
-get_current_project()                   # Current project info
-```
-
-### Search & Discovery
-
-```
-search_notes("authentication system")   # v0.13.0: includes frontmatter tags
-build_context("memory://specs/search")  # Follow knowledge graph connections
-recent_activity(timeframe="1 week")     # Check what's been updated
-```
-
-## memory:// URLs Explained
-
-Basic Memory uses a special URL format to reference entities in the knowledge graph:
-
-- `memory://title` - Reference by title
-- `memory://folder/title` - Reference by folder and title 
-- `memory://permalink` - Reference by permalink
-- `memory://path/relation_type/*` - Follow all relations of a specific type
-- `memory://path/*/target` - Find all entities with relations to target
-
-## Semantic Markdown Format
-
-Knowledge is encoded in standard markdown using simple patterns:
-
-**Observations** - Facts about an entity:
-```markdown
-- [category] This is an observation #tag1 #tag2 (optional context)
-```
-
-**Relations** - Links between entities:
-```markdown
-- relation_type [[Target Entity]] (optional context)
-```
-
-**Common Categories & Relation Types:**
-- Categories: `[idea]`, `[decision]`, `[question]`, `[fact]`, `[requirement]`, `[technique]`, `[recipe]`, `[preference]`
-- Relations: `relates_to`, `implements`, `requires`, `extends`, `part_of`, `pairs_with`, `inspired_by`, `originated_from`
-
-## When to Record Context
-
-**Always consider recording context when**:
-
-1. Users make decisions or reach conclusions
-2. Important information emerges during conversation
-3. Multiple related topics are discussed
-4. The conversation contains information that might be useful later
-5. Plans, tasks, or action items are mentioned
-
-**Protocol for recording context**:
-
-1. Identify valuable information in the conversation
-2. Ask the user: "Would you like me to record our discussion about [topic] in Basic Memory?"
-3. If they agree, use `write_note` to capture the information
-4. If they decline, continue without recording
-5. Let the user know when information has been recorded: "I've saved our discussion about [topic] to Basic Memory."
-
-## Understanding User Interactions
-
-Users will interact with Basic Memory in patterns like:
-
-1. **Creating knowledge**:
-   ```
-   Human: "Let's write up what we discussed about search."
-   
-   You: I'll create a note capturing our discussion about the search functionality.
-   [Use write_note() to record the conversation details]
-   ```
-
-2. **Referencing existing knowledge**:
-   ```
-   Human: "Take a look at memory://specs/search"
-   
-   You: I'll examine that information.
-   [Use build_context() to gather related information]
-   [Then read_note() to access specific content]
-   ```
-
-3. **Finding information**:
-   ```
-   Human: "What were our decisions about auth?"
-   
-   You: Let me find that information for you.
-   [Use search_notes() to find relevant notes]
-   [Then build_context() to understand connections]
-   ```
-
-4. **Editing existing notes (v0.13.0)**:
-   ```
-   Human: "Add a section about deployment to my API documentation"
-   
-   You: I'll add that section to your existing documentation.
-   [Use edit_note() with operation="append" to add new content]
-   ```
-
-5. **Project management (v0.13.0)**:
-   ```
-   Human: "Switch to my work project and show recent activity"
-   
-   You: I'll switch to your work project and check what's been updated recently.
-   [Use switch_project() then recent_activity()]
-   ```
-
-6. **File organization (v0.13.0)**:
-   ```
-   Human: "Move my old meeting notes to the archive folder"
-   
-   You: I'll organize those notes for you.
-   [Use move_note() to relocate files with database consistency]
-   ```
-
-## Key Things to Remember
-
-1. **Files are Truth**
-   - All knowledge lives in local files on the user's computer
-   - Users can edit files outside your interaction
-   - Changes need to be synced by the user (usually automatic)
-   - Always verify information is current with `recent_activity()`
-
-2. **Building Context Effectively**
-   - Start with specific entities
-   - Follow meaningful relations
-   - Check recent changes
-   - Build context incrementally
-   - Combine related information
-
-3. **Writing Knowledge Wisely**
-   - Same title+folder overwrites existing notes
-   - Structure with clear headings and semantic markup
-   - Use tags for searchability (v0.13.0: frontmatter tags indexed)
-   - Keep files organized in logical folders
-
-4. **Leverage v0.13.0 Features**
-   - **Edit incrementally**: Use `edit_note()` for small changes vs rewriting
-   - **Switch projects**: Change context when user mentions different work areas
-   - **Organize proactively**: Move old content to archive folders
-   - **Cross-project operations**: Create notes in specific projects while maintaining context
-
-## Common Knowledge Patterns
-
-### Capturing Decisions
-
-```markdown
----
-title: Coffee Brewing Methods
-tags: [coffee, brewing, pour-over, techniques]  # v0.13.0: Now searchable!
----
-
-# Coffee Brewing Methods
-
-## Context
-I've experimented with various brewing methods including French press, pour over, and espresso.
-
-## Decision
-Pour over is my preferred method for light to medium roasts because it highlights subtle flavors and offers more control over the extraction.
-
-## Observations
-- [technique] Blooming the coffee grounds for 30 seconds improves extraction #brewing
-- [preference] Water temperature between 195-205°F works best #temperature
-- [equipment] Gooseneck kettle provides better control of water flow #tools
-- [timing] Total brew time of 3-4 minutes produces optimal extraction #process
-
-## Relations
-- pairs_with [[Light Roast Beans]]
-- contrasts_with [[French Press Method]]
-- requires [[Proper Grinding Technique]]
-- part_of [[Morning Coffee Routine]]
-```
-
-### Recording Project Structure
-
-```markdown
-# Garden Planning
-
-## Overview
-This document outlines the garden layout and planting strategy for this season.
-
-## Observations
-- [structure] Raised beds in south corner for sun exposure #layout
-- [structure] Drip irrigation system installed for efficiency #watering
-- [pattern] Companion planting used to deter pests naturally #technique
-
-## Relations
-- contains [[Vegetable Section]]
-- contains [[Herb Garden]]
-- implements [[Organic Gardening Principles]]
-```
-
-### Technical Discussions
-
-```markdown
-# Recipe Improvement Discussion
-
-## Key Points
-Discussed strategies for improving the chocolate chip cookie recipe.
-
-## Observations
-- [issue] Cookies spread too thin when baked at 350°F #texture
-- [solution] Chilling dough for 24 hours improves flavor and reduces spreading #technique
-- [decision] Will use brown butter instead of regular butter #flavor
-
-## Relations
-- improves [[Basic Cookie Recipe]]
-- inspired_by [[Bakery-Style Cookies]]
-- pairs_with [[Homemade Ice Cream]]
-```
-
-## v0.13.0 Workflow Examples
-
-### Multi-Project Conversations
-
-**User:** "I need to update my work documentation and also add a personal recipe note."
-
-**Workflow:**
-1. `list_projects()` - Check available projects
-2. `write_note(title="Sprint Planning", project="work-notes")` - Work content
-3. `write_note(title="Weekend Recipes", project="personal")` - Personal content
-
-### Incremental Note Building
-
-**User:** "Add a troubleshooting section to my setup guide."
-
-**Workflow:**
-1. `edit_note(identifier="Setup Guide", operation="append", content="\n## Troubleshooting\n...")`
-
-**User:** "Update the authentication section in my API docs."
-
-**Workflow:**
-1. `edit_note(identifier="API Documentation", operation="replace_section", section="## Authentication")`
-
-### Smart File Organization
-
-**User:** "My notes are getting messy in the main folder."
-
-**Workflow:**
-1. `move_note("Old Meeting Notes", "archive/2024/old-meetings.md")`
-2. `move_note("Project Notes", "projects/client-work/notes.md")`
-
-### Creating Effective Relations
-
-When creating relations:
-1. **Reference existing entities** by their exact title: `[[Exact Title]]`
-2. **Create forward references** to entities that don't exist yet - they'll be linked automatically when created
-3. **Search first** to find existing entities to reference
-4. **Use meaningful relation types**: `implements`, `requires`, `part_of` vs generic `relates_to`
-
-**Example workflow:**
-1. `search_notes("travel")` to find existing travel-related notes
-2. Reference found entities: `- part_of [[Japan Travel Guide]]`
-3. Add forward references: `- located_in [[Tokyo]]` (even if Tokyo note doesn't exist yet)
-
-## Common Issues & Solutions
-
-**Missing Content:**
-- Try `search_notes()` with broader terms if `read_note()` fails
-- Use fuzzy matching: search for partial titles
-
-**Forward References:**
-- These are normal! Basic Memory links them automatically when target notes are created
-- Inform users: "I've created forward references that will be linked when you create those notes"
-
-**Sync Issues:**
-- If information seems outdated, suggest `basic-memory sync`
-- Use `recent_activity()` to check if content is current
-
-**Strict Mode for Edit/Move Operations:**
-- `edit_note()` and `move_note()` require **exact identifiers** (no fuzzy matching for safety)
-- If identifier not found: use `search_notes()` first to find the exact title/permalink
-- Error messages will guide you to find correct identifiers
-- Example workflow:
-  ```
-  # ❌ This might fail if identifier isn't exact
-  edit_note("Meeting Note", "append", "content")
-  
-  # ✅ Safe approach: search first, then use exact result
-  results = search_notes("meeting")
-  edit_note("Meeting Notes 2024", "append", "content")  # Use exact title from search
-  ```
-
-## Best Practices
-
-1. **Proactively Record Context**
-   - Offer to capture important discussions
-   - Record decisions, rationales, and conclusions
-   - Link to related topics
-   - Ask for permission first: "Would you like me to save our discussion about [topic]?"
-   - Confirm when complete: "I've saved our discussion to Basic Memory"
-
-2. **Create a Rich Semantic Graph**
-   - **Add meaningful observations**: Include at least 3-5 categorized observations in each note
-   - **Create deliberate relations**: Connect each note to at least 2-3 related entities
-   - **Use existing entities**: Before creating a new relation, search for existing entities
-   - **Verify wikilinks**: When referencing `[[Entity]]`, use exact titles of existing notes
-   - **Check accuracy**: Use `search_notes()` or `recent_activity()` to confirm entity titles
-   - **Use precise relation types**: Choose specific relation types that convey meaning (e.g., "implements" instead of "relates_to")
-   - **Consider bidirectional relations**: When appropriate, create inverse relations in both entities
-
-3. **Structure Content Thoughtfully**
-   - Use clear, descriptive titles
-   - Organize with logical sections (Context, Decision, Implementation, etc.)
-   - Include relevant context and background
-   - Add semantic observations with appropriate categories
-   - Use a consistent format for similar types of notes
-   - Balance detail with conciseness
-
-4. **Navigate Knowledge Effectively**
-   - Start with specific searches
-   - Follow relation paths
-   - Combine information from multiple sources
-   - Verify information is current
-   - Build a complete picture before responding
-
-5. **Help Users Maintain Their Knowledge**
-   - Suggest organizing related topics
-   - Identify potential duplicates
-   - Recommend adding relations between topics
-   - Offer to create summaries of scattered information
-   - Suggest potential missing relations: "I notice this might relate to [topic], would you like me to add that connection?"
-
-
-Built with ♥️ by Basic Machines

docs/cloud-cli.md

@@ -0,0 +1,726 @@
+# Basic Memory Cloud CLI Guide
+
+The Basic Memory Cloud CLI provides seamless integration between local and cloud knowledge bases using **project-scoped synchronization**. Each project can optionally sync with the cloud, giving you fine-grained control over what syncs and where.
+
+## Overview
+
+The cloud CLI enables you to:
+- **Toggle cloud mode** - All regular `bm` commands work with cloud when enabled
+- **Project-scoped sync** - Each project independently manages its sync configuration
+- **Explicit operations** - Sync only what you want, when you want
+- **Bidirectional sync** - Keep local and cloud in sync with rclone bisync
+- **Offline access** - Work locally, sync when ready
+
+## Prerequisites
+
+Before using Basic Memory Cloud, you need:
+
+- **Active Subscription**: An active Basic Memory Cloud subscription is required to access cloud features
+- **Subscribe**: Visit [https://basicmemory.com/subscribe](https://basicmemory.com/subscribe) to sign up
+
+If you attempt to log in without an active subscription, you'll receive a "Subscription Required" error with a link to subscribe.
+
+## Architecture: Project-Scoped Sync
+
+### The Problem
+
+**Old approach (SPEC-8):** All projects lived in a single `~/basic-memory-cloud-sync/` directory. This caused:
+- ❌ Directory conflicts between mount and bisync
+- ❌ Auto-discovery creating phantom projects
+- ❌ Confusion about what syncs and when
+- ❌ All-or-nothing sync (couldn't sync just one project)
+
+**New approach (SPEC-20):** Each project independently configures sync.
+
+### How It Works
+
+**Projects can exist in three states:**
+
+1. **Cloud-only** - Project exists on cloud, no local copy
+2. **Cloud + Local (synced)** - Project has a local working directory that syncs
+3. **Local-only** - Project exists locally (when cloud mode is disabled)
+
+**Example:**
+
+```bash
+# You have 3 projects on cloud:
+# - research: wants local sync at ~/Documents/research
+# - work: wants local sync at ~/work-notes
+# - temp: cloud-only, no local sync needed
+
+bm project add research --local-path ~/Documents/research
+bm project add work --local-path ~/work-notes
+bm project add temp  # No local sync
+
+# Now you can sync individually (after initial --resync):
+bm project bisync --name research
+bm project bisync --name work
+# temp stays cloud-only
+```
+
+**What happens under the covers:**
+- Config stores `cloud_projects` dict mapping project names to local paths
+- Each project gets its own bisync state in `~/.basic-memory/bisync-state/{project}/`
+- Rclone syncs using single remote: `basic-memory-cloud`
+- Projects can live anywhere on your filesystem, not forced into sync directory
+
+## Quick Start
+
+### 1. Enable Cloud Mode
+
+Authenticate and enable cloud mode:
+
+```bash
+bm cloud login
+```
+
+**What this does:**
+1. Opens browser to Basic Memory Cloud authentication page
+2. Stores authentication token in `~/.basic-memory/auth/token`
+3. **Enables cloud mode** - all CLI commands now work against cloud
+4. Validates your subscription status
+
+**Result:** All `bm project`, `bm tools` commands now work with cloud.
+
+### 2. Set Up Sync
+
+Install rclone and configure credentials:
+
+```bash
+bm cloud setup
+```
+
+**What this does:**
+1. Installs rclone automatically (if needed)
+2. Fetches your tenant information from cloud
+3. Generates scoped S3 credentials for sync
+4. Configures single rclone remote: `basic-memory-cloud`
+
+**Result:** You're ready to sync projects. No sync directories created yet - those come with project setup.
+
+### 3. Add Projects with Sync
+
+Create projects with optional local sync paths:
+
+```bash
+# Create cloud project without local sync
+bm project add research
+
+# Create cloud project WITH local sync
+bm project add research --local-path ~/Documents/research
+
+# Or configure sync for existing project
+bm project sync-setup research ~/Documents/research
+```
+
+**What happens under the covers:**
+
+When you add a project with `--local-path`:
+1. Project created on cloud at `/app/data/research`
+2. Local path stored in config: `cloud_projects.research.local_path = "~/Documents/research"`
+3. Local directory created if it doesn't exist
+4. Bisync state directory created at `~/.basic-memory/bisync-state/research/`
+
+**Result:** Project is ready to sync, but no files synced yet.
+
+### 4. Sync Your Project
+
+Establish the initial sync baseline. **Best practice:** Always preview with `--dry-run` first:
+
+```bash
+# Step 1: Preview the initial sync (recommended)
+bm project bisync --name research --resync --dry-run
+
+# Step 2: If all looks good, run the actual sync
+bm project bisync --name research --resync
+```
+
+**What happens under the covers:**
+1. Rclone reads from `~/Documents/research` (local)
+2. Connects to `basic-memory-cloud:bucket-name/app/data/research` (remote)
+3. Creates bisync state files in `~/.basic-memory/bisync-state/research/`
+4. Syncs files bidirectionally with settings:
+   - `conflict_resolve=newer` (most recent wins)
+   - `max_delete=25` (safety limit)
+   - Respects `.bmignore` patterns
+
+**Result:** Local and cloud are in sync. Baseline established.
+
+**Why `--resync`?** This is an rclone requirement for the first bisync run. It establishes the initial state that future syncs will compare against. After the first sync, never use `--resync` unless you need to force a new baseline.
+
+See: https://rclone.org/bisync/#resync
+```
+--resync
+This will effectively make both Path1 and Path2 filesystems contain a matching superset of all files. By default, Path2 files that do not exist in Path1 will be copied to Path1, and the process will then copy the Path1 tree to Path2.
+```
+
+### 5. Subsequent Syncs
+
+After the first sync, just run bisync without `--resync`:
+
+```bash
+bm project bisync --name research
+```
+
+**What happens:**
+1. Rclone compares local and cloud states
+2. Syncs changes in both directions
+3. Auto-resolves conflicts (newer file wins)
+4. Updates `last_sync` timestamp in config
+
+**Result:** Changes flow both ways - edit locally or in cloud, both stay in sync.
+
+### 6. Verify Setup
+
+Check status:
+
+```bash
+bm cloud status
+```
+
+You should see:
+- `Mode: Cloud (enabled)`
+- `Cloud instance is healthy`
+- Instructions for project sync commands
+
+## Working with Projects
+
+### Understanding Project Commands
+
+**Key concept:** When cloud mode is enabled, use regular `bm project` commands (not `bm cloud project`).
+
+```bash
+# In cloud mode:
+bm project list              # Lists cloud projects
+bm project add research      # Creates cloud project
+
+# In local mode:
+bm project list              # Lists local projects
+bm project add research ~/Documents/research  # Creates local project
+```
+
+### Creating Projects
+
+**Use case 1: Cloud-only project (no local sync)**
+
+```bash
+bm project add temp-notes
+```
+
+**What this does:**
+- Creates project on cloud at `/app/data/temp-notes`
+- No local directory created
+- No sync configuration
+
+**Result:** Project exists on cloud, accessible via MCP tools, but no local copy.
+
+**Use case 2: Cloud project with local sync**
+
+```bash
+bm project add research --local-path ~/Documents/research
+```
+
+**What this does:**
+- Creates project on cloud at `/app/data/research`
+- Creates local directory `~/Documents/research`
+- Stores sync config in `~/.basic-memory/config.json`
+- Prepares for bisync (but doesn't sync yet)
+
+**Result:** Project ready to sync. Run `bm project bisync --name research --resync` to establish baseline.
+
+**Use case 3: Add sync to existing cloud project**
+
+```bash
+# Project already exists on cloud
+bm project sync-setup research ~/Documents/research
+```
+
+**What this does:**
+- Updates existing project's sync configuration
+- Creates local directory
+- Prepares for bisync
+
+**Result:** Existing cloud project now has local sync path. Run bisync to pull files down.
+
+### Listing Projects
+
+View all projects:
+
+```bash
+bm project list
+```
+
+**What you see:**
+- All projects in cloud (when cloud mode enabled)
+- Default project marked
+- Project paths shown
+
+**Future:** Will show sync status (synced/not synced, last sync time).
+
+## File Synchronization
+
+### Understanding the Sync Commands
+
+**There are three sync-related commands:**
+
+1. `bm project sync` - One-way: local → cloud (make cloud match local)
+2. `bm project bisync` - Two-way: local ↔ cloud (recommended)
+3. `bm project check` - Verify files match (no changes)
+
+### One-Way Sync: Local → Cloud
+
+**Use case:** You made changes locally and want to push to cloud (overwrite cloud).
+
+```bash
+bm project sync --name research
+```
+
+**What happens:**
+1. Reads files from `~/Documents/research` (local)
+2. Uses rclone sync to make cloud identical to local
+3. Respects `.bmignore` patterns
+4. Shows progress bar
+
+**Result:** Cloud now matches local exactly. Any cloud-only changes are overwritten.
+
+**When to use:**
+- You know local is the source of truth
+- You want to force cloud to match local
+- You don't care about cloud changes
+
+### Two-Way Sync: Local ↔ Cloud (Recommended)
+
+**Use case:** You edit files both locally and in cloud UI, want both to stay in sync.
+
+```bash
+# First time - establish baseline
+bm project bisync --name research --resync
+
+# Subsequent syncs
+bm project bisync --name research
+```
+
+**What happens:**
+1. Compares local and cloud states using bisync metadata
+2. Syncs changes in both directions
+3. Auto-resolves conflicts (newer file wins)
+4. Detects excessive deletes and fails safely (max 25 files)
+
+**Conflict resolution example:**
+
+```bash
+# Edit locally
+echo "Local change" > ~/Documents/research/notes.md
+
+# Edit same file in cloud UI
+# Cloud now has: "Cloud change"
+
+# Run bisync
+bm project bisync --name research
+
+# Result: Newer file wins (based on modification time)
+# If cloud was more recent, cloud version kept
+# If local was more recent, local version kept
+```
+
+**When to use:**
+- Default workflow for most users
+- You edit in multiple places
+- You want automatic conflict resolution
+
+### Verify Sync Integrity
+
+**Use case:** Check if local and cloud match without making changes.
+
+```bash
+bm project check --name research
+```
+
+**What happens:**
+1. Compares file checksums between local and cloud
+2. Reports differences
+3. No files transferred
+
+**Result:** Shows which files differ. Run bisync to sync them.
+
+```bash
+# One-way check (faster)
+bm project check --name research --one-way
+```
+
+### Preview Changes (Dry Run)
+
+**Use case:** See what would change without actually syncing.
+
+```bash
+bm project bisync --name research --dry-run
+```
+
+**What happens:**
+1. Runs bisync logic
+2. Shows what would be transferred/deleted
+3. No actual changes made
+
+**Result:** Safe preview of sync operations.
+
+### Advanced: List Remote Files
+
+**Use case:** See what files exist on cloud without syncing.
+
+```bash
+# List all files in project
+bm project ls --name research
+
+# List files in subdirectory
+bm project ls --name research --path subfolder
+```
+
+**What happens:**
+1. Connects to cloud via rclone
+2. Lists files in remote project path
+3. No files transferred
+
+**Result:** See cloud file listing.
+
+## Multiple Projects
+
+### Syncing Multiple Projects
+
+**Use case:** You have several projects with local sync, want to sync all at once.
+
+```bash
+# Setup multiple projects
+bm project add research --local-path ~/Documents/research
+bm project add work --local-path ~/work-notes
+bm project add personal --local-path ~/personal
+
+# Establish baselines
+bm project bisync --name research --resync
+bm project bisync --name work --resync
+bm project bisync --name personal --resync
+
+# Daily workflow: sync everything
+bm project bisync --name research
+bm project bisync --name work
+bm project bisync --name personal
+```
+
+**Future:** `--all` flag will sync all configured projects:
+
+```bash
+bm project bisync --all  # Coming soon
+```
+
+### Mixed Usage
+
+**Use case:** Some projects sync, some stay cloud-only.
+
+```bash
+# Projects with sync
+bm project add research --local-path ~/Documents/research
+bm project add work --local-path ~/work
+
+# Cloud-only projects
+bm project add archive
+bm project add temp-notes
+
+# Sync only the configured ones
+bm project bisync --name research
+bm project bisync --name work
+
+# Archive and temp-notes stay cloud-only
+```
+
+**Result:** Fine-grained control over what syncs.
+
+## Disable Cloud Mode
+
+Return to local mode:
+
+```bash
+bm cloud logout
+```
+
+**What this does:**
+1. Disables cloud mode in config
+2. All commands now work locally
+3. Auth token remains (can re-enable with login)
+
+**Result:** All `bm` commands work with local projects again.
+
+## Filter Configuration
+
+### Understanding .bmignore
+
+**The problem:** You don't want to sync everything (e.g., `.git`, `node_modules`, database files).
+
+**The solution:** `.bmignore` file with gitignore-style patterns.
+
+**Location:** `~/.basic-memory/.bmignore`
+
+**Default patterns:**
+
+```gitignore
+# Version control
+.git/**
+
+# Python
+__pycache__/**
+*.pyc
+.venv/**
+venv/**
+
+# Node.js
+node_modules/**
+
+# Basic Memory internals
+memory.db/**
+memory.db-shm/**
+memory.db-wal/**
+config.json/**
+watch-status.json/**
+.bmignore.rclone/**
+
+# OS files
+.DS_Store/**
+Thumbs.db/**
+
+# Environment files
+.env/**
+.env.local/**
+```
+
+**How it works:**
+1. On first sync, `.bmignore` created with defaults
+2. Patterns converted to rclone filter format (`.bmignore.rclone`)
+3. Rclone uses filters during sync
+4. Same patterns used by all projects
+
+**Customizing:**
+
+```bash
+# Edit patterns
+code ~/.basic-memory/.bmignore
+
+# Add custom patterns
+echo "*.tmp/**" >> ~/.basic-memory/.bmignore
+
+# Next sync uses updated patterns
+bm project bisync --name research
+```
+
+## Troubleshooting
+
+### Authentication Issues
+
+**Problem:** "Authentication failed" or "Invalid token"
+
+**Solution:** Re-authenticate:
+
+```bash
+bm cloud logout
+bm cloud login
+```
+
+### Subscription Issues
+
+**Problem:** "Subscription Required" error
+
+**Solution:**
+1. Visit subscribe URL shown in error
+2. Sign up for subscription
+3. Run `bm cloud login` again
+
+**Note:** Access is immediate when subscription becomes active.
+
+### Bisync Initialization
+
+**Problem:** "First bisync requires --resync"
+
+**Explanation:** Bisync needs a baseline state before it can sync changes.
+
+**Solution:**
+
+```bash
+bm project bisync --name research --resync
+```
+
+**What this does:**
+- Establishes initial sync state
+- Creates baseline in `~/.basic-memory/bisync-state/research/`
+- Syncs all files bidirectionally
+
+**Result:** Future syncs work without `--resync`.
+
+### Empty Directory Issues
+
+**Problem:** "Empty prior Path1 listing. Cannot sync to an empty directory"
+
+**Explanation:** Rclone bisync doesn't work well with completely empty directories. It needs at least one file to establish a baseline.
+
+**Solution:** Add at least one file before running `--resync`:
+
+```bash
+# Create a placeholder file
+echo "# Research Notes" > ~/Documents/research/README.md
+
+# Now run bisync
+bm project bisync --name research --resync
+```
+
+**Why this happens:** Bisync creates listing files that track the state of each side. When both directories are completely empty, these listing files are considered invalid by rclone.
+
+**Best practice:** Always have at least one file (like a README.md) in your project directory before setting up sync.
+
+### Bisync State Corruption
+
+**Problem:** Bisync fails with errors about corrupted state or listing files
+
+**Explanation:** Sometimes bisync state can become inconsistent (e.g., after mixing dry-run and actual runs, or after manual file operations).
+
+**Solution:** Clear bisync state and re-establish baseline:
+
+```bash
+# Clear bisync state
+bm project bisync-reset research
+
+# Re-establish baseline
+bm project bisync --name research --resync
+```
+
+**What this does:**
+- Removes all bisync metadata from `~/.basic-memory/bisync-state/research/`
+- Forces fresh baseline on next `--resync`
+- Safe operation (doesn't touch your files)
+
+**Note:** This command also runs automatically when you remove a project to clean up state directories.
+
+### Too Many Deletes
+
+**Problem:** "Error: max delete limit (25) exceeded"
+
+**Explanation:** Bisync detected you're about to delete more than 25 files. This is a safety check to prevent accidents.
+
+**Solution 1:** Review what you're deleting, then force resync:
+
+```bash
+# Check what would be deleted
+bm project bisync --name research --dry-run
+
+# If correct, establish new baseline
+bm project bisync --name research --resync
+```
+
+**Solution 2:** Use one-way sync if you know local is correct:
+
+```bash
+bm project sync --name research
+```
+
+### Project Not Configured for Sync
+
+**Problem:** "Project research has no local_sync_path configured"
+
+**Explanation:** Project exists on cloud but has no local sync path.
+
+**Solution:**
+
+```bash
+bm project sync-setup research ~/Documents/research
+bm project bisync --name research --resync
+```
+
+### Connection Issues
+
+**Problem:** "Cannot connect to cloud instance"
+
+**Solution:** Check status:
+
+```bash
+bm cloud status
+```
+
+If instance is down, wait a few minutes and retry.
+
+## Security
+
+- **Authentication**: OAuth 2.1 with PKCE flow
+- **Tokens**: Stored securely in `~/.basic-memory/basic-memory-cloud.json`
+- **Transport**: All data encrypted in transit (HTTPS)
+- **Credentials**: Scoped S3 credentials (read-write to your tenant only)
+- **Isolation**: Your data isolated from other tenants
+- **Ignore patterns**: Sensitive files automatically excluded via `.bmignore`
+
+## Command Reference
+
+### Cloud Mode Management
+
+```bash
+bm cloud login              # Authenticate and enable cloud mode
+bm cloud logout             # Disable cloud mode
+bm cloud status             # Check cloud mode and instance health
+```
+
+### Setup
+
+```bash
+bm cloud setup              # Install rclone and configure credentials
+```
+
+### Project Management
+
+When cloud mode is enabled:
+
+```bash
+bm project list                           # List cloud projects
+bm project add <name>                     # Create cloud project (no sync)
+bm project add <name> --local-path <path> # Create with local sync
+bm project sync-setup <name> <path>       # Add sync to existing project
+bm project rm <name>                      # Delete project
+```
+
+### File Synchronization
+
+```bash
+# One-way sync (local → cloud)
+bm project sync --name <project>
+bm project sync --name <project> --dry-run
+bm project sync --name <project> --verbose
+
+# Two-way sync (local ↔ cloud) - Recommended
+bm project bisync --name <project>          # After first --resync
+bm project bisync --name <project> --resync # First time / force baseline
+bm project bisync --name <project> --dry-run
+bm project bisync --name <project> --verbose
+
+# Integrity check
+bm project check --name <project>
+bm project check --name <project> --one-way
+
+# List remote files
+bm project ls --name <project>
+bm project ls --name <project> --path <subpath>
+```
+
+## Summary
+
+**Basic Memory Cloud uses project-scoped sync:**
+
+1. **Enable cloud mode** - `bm cloud login`
+2. **Install rclone** - `bm cloud setup`
+3. **Add projects with sync** - `bm project add research --local-path ~/Documents/research`
+4. **Preview first sync** - `bm project bisync --name research --resync --dry-run`
+5. **Establish baseline** - `bm project bisync --name research --resync`
+6. **Daily workflow** - `bm project bisync --name research`
+
+**Key benefits:**
+- ✅ Each project independently syncs (or doesn't)
+- ✅ Projects can live anywhere on disk
+- ✅ Explicit sync operations (no magic)
+- ✅ Safe by design (max delete limits, conflict resolution)
+- ✅ Full offline access (work locally, sync when ready)
+
+**Future enhancements:**
+- `--all` flag to sync all configured projects
+- Project list showing sync status
+- Watch mode for automatic sync

justfile

@@ -2,28 +2,36 @@
 
 # Install dependencies
 install:
-    pip install -e ".[dev]"
+    uv pip install -e ".[dev]"
     uv sync
     @echo ""
     @echo "💡 Remember to activate the virtual environment by running: source .venv/bin/activate"
 
-# Run unit tests in parallel
+# Run unit tests only (fast, no coverage)
 test-unit:
-    uv run pytest -p pytest_mock -v -n auto
+    uv run pytest -p pytest_mock -v --no-cov -n auto tests
 
-# Run integration tests in parallel
+# Run integration tests only (fast, no coverage)
 test-int:
     uv run pytest -p pytest_mock -v --no-cov -n auto test-int
 
-# Run all tests
+# Run all tests with unified coverage report
 test: test-unit test-int
 
+# Generate HTML coverage report
+coverage:
+    uv run pytest -p pytest_mock -v -n auto tests test-int --cov-report=html
+    @echo "Coverage report generated in htmlcov/index.html"
+
+# Lint and fix code (calls fix)
+lint: fix
+
 # Lint and fix code
-lint:
-    uv run ruff check . --fix
+fix:
+    uv run ruff check --fix --unsafe-fixes src tests test-int
 
 # Type check code
-type-check:
+typecheck:
     uv run pyright
 
 # Clean build artifacts and cache files
@@ -55,7 +63,7 @@ update-deps:
     uv sync --upgrade
 
 # Run all code quality checks and tests
-check: lint format type-check test
+check: lint format typecheck test
 
 # Generate Alembic migration with descriptive message
 migration message:

legal_exhibits/drew_cain_exhibit_a.csv

@@ -1,31 +0,0 @@
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-CLAUDE.md,CLAUDE.md,legal,12310,2025-07-03,Drew Cain,Drew Cain; Paul Hernandez; bm-claudeai (AI Assistant); Ikko Eltociear Ashimine,751f10c1a9a9c0ba2054d9c9cd36cf0989d6a347491fd505bb6504ee74b12900
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legal_exhibits/joe_exhibit_a.csv

@@ -1,28 +0,0 @@
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-tests/cli/test_import_memory_json.py,test_import_memory_json.py,source_code,4891,2025-07-30,jope-bm,jope-bm; bm-claudeai (AI Assistant); Paul Hernandez,d6734ce059dacf97bc764d848b2e2a6ba52fa96871bc331ec9d2ddc60b766bb6
-tests/cli/test_project_commands.py,test_project_commands.py,source_code,6578,2025-07-30,jope-bm,jope-bm; Paul Hernandez; bm-claudeai (AI Assistant),51e2ac7ff44b0d1a1db6da406c5c2e6aebceb1b63a1e8d5ab51bbaa834507157
-tests/mcp/test_tool_move_note.py,test_tool_move_note.py,source_code,25851,2025-07-30,jope-bm,jope-bm; Paul Hernandez,c9f95158503fa42e37532aaa35027538fa49cea718d059d570cf547d31f01043
-tests/mcp/test_tool_read_content.py,test_tool_read_content.py,source_code,19442,2025-07-30,jope-bm,jope-bm,1817e32f997b06dbdabf02864d0c70584c1cd80bf1fae8dfbef649de79434bc5
-tests/mcp/test_tool_read_note.py,test_tool_read_note.py,source_code,22991,2025-07-30,jope-bm,jope-bm; Paul Hernandez; Amadeusz Wieczorek; github-actions[bot] (AI Assistant),4e13ea9ff977525aa62b6a8c22505ffe989329dc3e7d07b71e044cf43ef3ddfd
-tests/mcp/test_tool_write_note.py,test_tool_write_note.py,source_code,35136,2025-07-30,jope-bm,jope-bm; Drew Cain; Paul Hernandez,45172de20cfc4f4436287573b4f5a94b8b616a360647af67ba1c6c343ccd41b8
-tests/repository/test_project_repository.py,test_project_repository.py,source_code,10511,2025-07-30,jope-bm,jope-bm; bm-claudeai (AI Assistant),279a3324635b1b515c18003bd1875cf230fef1192cadef9ca426846783717e75
-tests/services/test_project_service.py,test_project_service.py,source_code,28152,2025-07-30,jope-bm,jope-bm; Paul Hernandez; bm-claudeai (AI Assistant),430868ed796518937a3b0bed4d8c33be53264a6100d61d54b0745bb2b58bf29a
-tests/utils/test_validate_project_path.py,test_validate_project_path.py,source_code,15346,2025-07-30,jope-bm,jope-bm,27a4bf2a9d277e6cd773619e5241b20175d211ec60c284361bec404fd99143f3

legal_file_inventory.py

@@ -1,438 +0,0 @@
-#!/usr/bin/env python3
-"""
-Legal File Inventory Generator for Basic Memory
-
-This script generates a comprehensive file inventory for legal documentation purposes,
-including copyright assignments and company agreement exhibits.
-
-The inventory includes:
-- All source code files and their contributors
-- Documentation and configuration files
-- License and legal files
-- Excludes generated files, dependencies, and temporary files
-
-Usage:
-    python legal_file_inventory.py [--output inventory.csv] [--format csv|json|markdown]
-"""
-
-import os
-import json
-import csv
-import subprocess
-from pathlib import Path
-from datetime import datetime
-from typing import Dict, List
-import argparse
-import hashlib
-
-class FileInventoryGenerator:
-    def __init__(self, repo_path: str = "."):
-        self.repo_path = Path(repo_path).resolve()
-        self.inventory = []
-        
-        # File patterns to exclude from legal inventory
-        self.exclude_patterns = {
-            # Version control and git
-            '.git', '.gitignore', '.gitmodules',
-            
-            # Python compiled and cache files
-            '__pycache__', '*.pyc', '*.pyo', '*.pyd', '.pytest_cache',
-            
-            # Virtual environments and dependencies
-            '.venv', 'venv', '.env', 'env', 'ENV',
-            '*.dist-info', 'site-packages',
-            
-            # IDE and editor files
-            '.idea', '.vscode', '*.swp', '*.swo', '.DS_Store',
-            
-            # Build and distribution artifacts
-            'build', 'dist', 'htmlcov', '.coverage', '.coverage.*',
-            '*.egg-info', '.eggs', 'wheels',
-            
-            # Cache and temporary files
-            '.ruff_cache', '.mypy_cache', '.tox',
-            'node_modules', '.npm',
-            
-            # Documentation build artifacts (but keep source docs)
-            '.obsidian',
-            
-            # Lock files (these are generated)
-            'uv.lock', 'Pipfile.lock', 'poetry.lock', 'package-lock.json'
-        }
-        
-        # File extensions that are definitely source/authored content
-        self.source_extensions = {
-            '.py', '.md', '.rst', '.txt', '.toml', '.yaml', '.yml',
-            '.json', '.cfg', '.ini', '.conf', '.sh', '.sql',
-            '.js', '.ts', '.jsx', '.tsx', '.css', '.scss', '.sass',
-            '.html', '.htm', '.xml', '.svg', '.dockerfile', '.Dockerfile'
-        }
-        
-        # License file patterns
-        self.license_patterns = {
-            'LICENSE', 'LICENCE', 'COPYING', 'COPYRIGHT',
-            'license.txt', 'LICENSE.txt', 'LICENSE.md',
-            'CITATION.cff', 'CLA.md'
-        }
-
-    def run_git_command(self, command: List[str]) -> str:
-        """Run a git command and return the output."""
-        try:
-            result = subprocess.run(
-                ['git'] + command,
-                cwd=self.repo_path,
-                capture_output=True,
-                text=True,
-                check=True
-            )
-            return result.stdout.strip()
-        except subprocess.CalledProcessError:
-            return ""
-
-    def get_file_contributors(self, file_path: str) -> Dict[str, int]:
-        """Get contributors and their line contributions for a file."""
-        try:
-            blame_output = self.run_git_command(['blame', '--line-porcelain', file_path])
-            contributors = {}
-            
-            for line in blame_output.split('\n'):
-                if line.startswith('author '):
-                    author = line[7:]  # Remove 'author ' prefix
-                    contributors[author] = contributors.get(author, 0) + 1
-                    
-            return contributors
-        except Exception:
-            return {}
-
-    def get_file_history(self, file_path: str) -> Dict[str, any]:
-        """Get file creation date, last modification, and total commits."""
-        try:
-            # Get creation date (first commit)
-            first_commit = self.run_git_command([
-                'log', '--follow', '--format=%ad', '--date=iso',
-                '--reverse', file_path
-            ]).split('\n')[0] if self.run_git_command([
-                'log', '--follow', '--format=%ad', '--date=iso', 
-                '--reverse', file_path
-            ]) else None
-            
-            # Get last modification date
-            last_commit = self.run_git_command([
-                'log', '-1', '--format=%ad', '--date=iso', file_path
-            ])
-            
-            # Get total commits for this file
-            commit_count = len(self.run_git_command([
-                'log', '--follow', '--oneline', file_path
-            ]).split('\n')) if self.run_git_command([
-                'log', '--follow', '--oneline', file_path
-            ]) else 0
-            
-            return {
-                'created': first_commit or 'Unknown',
-                'last_modified': last_commit or 'Unknown',
-                'commit_count': commit_count
-            }
-        except Exception:
-            return {
-                'created': 'Unknown',
-                'last_modified': 'Unknown', 
-                'commit_count': 0
-            }
-
-    def should_exclude_file(self, file_path: Path) -> bool:
-        """Determine if a file should be excluded from the inventory."""
-        str_path = str(file_path)
-        
-        # Check if any part of the path matches exclude patterns
-        for pattern in self.exclude_patterns:
-            if pattern in str_path or file_path.match(pattern):
-                return True
-        
-        # Exclude files in virtual environment paths
-        if '/.venv/' in str_path or '/venv/' in str_path:
-            return True
-            
-        # Exclude binary files that are likely dependencies
-        if file_path.suffix in {'.so', '.dylib', '.dll', '.pyd'}:
-            return True
-            
-        return False
-
-    def calculate_file_hash(self, file_path: Path) -> str:
-        """Calculate SHA-256 hash of file content."""
-        try:
-            with open(file_path, 'rb') as f:
-                return hashlib.sha256(f.read()).hexdigest()
-        except Exception:
-            return ""
-
-    def categorize_file(self, file_path: Path) -> str:
-        """Categorize the file based on its path and extension."""
-        str_path = str(file_path).lower()
-        
-        # License and legal files
-        if any(pattern.lower() in file_path.name.lower() for pattern in self.license_patterns):
-            return "Legal/License"
-        
-        # Documentation
-        if file_path.suffix.lower() in {'.md', '.rst', '.txt'} and any(
-            doc_dir in str_path for doc_dir in ['doc', 'readme', 'changelog', 'contributing']
-        ):
-            return "Documentation"
-        
-        # Configuration files
-        if file_path.suffix.lower() in {'.toml', '.yaml', '.yml', '.json', '.cfg', '.ini', '.conf'}:
-            return "Configuration"
-        
-        # Source code
-        if file_path.suffix.lower() in {'.py', '.js', '.ts', '.jsx', '.tsx'}:
-            return "Source Code"
-        
-        # Tests
-        if 'test' in str_path and file_path.suffix.lower() == '.py':
-            return "Test Code"
-        
-        # Build and deployment
-        if file_path.name.lower() in {'dockerfile', 'justfile', 'makefile'} or file_path.suffix.lower() in {'.sh'}:
-            return "Build/Deployment"
-        
-        # Database and migrations
-        if 'migration' in str_path or 'alembic' in str_path or file_path.suffix.lower() == '.sql':
-            return "Database/Migration"
-        
-        # Templates and resources
-        if file_path.suffix.lower() in {'.hbs', '.j2', '.jinja', '.template'}:
-            return "Templates/Resources"
-        
-        return "Other"
-
-    def scan_repository(self):
-        """Scan the repository and build the file inventory."""
-        print(f"Scanning repository: {self.repo_path}")
-        
-        for root, dirs, files in os.walk(self.repo_path):
-            # Skip excluded directories
-            dirs[:] = [d for d in dirs if not any(pattern in d for pattern in self.exclude_patterns)]
-            
-            for file in files:
-                file_path = Path(root) / file
-                relative_path = file_path.relative_to(self.repo_path)
-                
-                # Skip excluded files
-                if self.should_exclude_file(relative_path):
-                    continue
-                
-                # Get file stats
-                try:
-                    stat_info = file_path.stat()
-                    file_size = stat_info.st_size
-                    modified_time = datetime.fromtimestamp(stat_info.st_mtime)
-                except Exception:
-                    file_size = 0
-                    modified_time = datetime.now()
-                
-                # Get git information
-                contributors = self.get_file_contributors(str(relative_path))
-                history = self.get_file_history(str(relative_path))
-                
-                # Calculate file hash for integrity verification
-                file_hash = self.calculate_file_hash(file_path)
-                
-                # Build inventory entry
-                entry = {
-                    'file_path': str(relative_path),
-                    'full_path': str(file_path),
-                    'file_name': file_path.name,
-                    'file_extension': file_path.suffix,
-                    'file_size_bytes': file_size,
-                    'category': self.categorize_file(relative_path),
-                    'fs_modified_date': modified_time.isoformat(),
-                    'git_created_date': history['created'],
-                    'git_last_modified': history['last_modified'],
-                    'git_commit_count': history['commit_count'],
-                    'contributors': contributors,
-                    'primary_author': max(contributors.items(), key=lambda x: x[1])[0] if contributors else 'Unknown',
-                    'contributor_count': len(contributors),
-                    'total_author_lines': sum(contributors.values()) if contributors else 0,
-                    'sha256_hash': file_hash,
-                    'scan_timestamp': datetime.now().isoformat()
-                }
-                
-                self.inventory.append(entry)
-        
-        print(f"Scanned {len(self.inventory)} files")
-
-    def get_summary_statistics(self) -> Dict:
-        """Generate summary statistics for the inventory."""
-        if not self.inventory:
-            return {}
-        
-        # Collect all contributors
-        all_contributors = set()
-        for entry in self.inventory:
-            all_contributors.update(entry['contributors'].keys())
-        
-        # Category breakdown
-        categories = {}
-        for entry in self.inventory:
-            cat = entry['category']
-            categories[cat] = categories.get(cat, 0) + 1
-        
-        # File extension breakdown
-        extensions = {}
-        for entry in self.inventory:
-            ext = entry['file_extension'] or 'no_extension'
-            extensions[ext] = extensions.get(ext, 0) + 1
-        
-        # Contributor statistics
-        contributor_files = {}
-        contributor_lines = {}
-        for entry in self.inventory:
-            for contributor, lines in entry['contributors'].items():
-                contributor_files[contributor] = contributor_files.get(contributor, 0) + 1
-                contributor_lines[contributor] = contributor_lines.get(contributor, 0) + lines
-        
-        return {
-            'total_files': len(self.inventory),
-            'total_contributors': len(all_contributors),
-            'categories': categories,
-            'file_extensions': extensions,
-            'contributor_file_counts': contributor_files,
-            'contributor_line_counts': contributor_lines,
-            'scan_date': datetime.now().isoformat(),
-            'repository_path': str(self.repo_path)
-        }
-
-    def export_csv(self, output_file: str):
-        """Export inventory to CSV format."""
-        with open(output_file, 'w', newline='', encoding='utf-8') as f:
-            if not self.inventory:
-                return
-            
-            fieldnames = list(self.inventory[0].keys())
-            # Convert complex fields to strings for CSV
-            fieldnames = [f for f in fieldnames if f != 'contributors']
-            fieldnames.append('contributors_json')
-            
-            writer = csv.DictWriter(f, fieldnames=fieldnames)
-            writer.writeheader()
-            
-            for entry in self.inventory:
-                row = {k: v for k, v in entry.items() if k != 'contributors'}
-                row['contributors_json'] = json.dumps(entry['contributors'])
-                writer.writerow(row)
-
-    def export_json(self, output_file: str):
-        """Export inventory to JSON format."""
-        export_data = {
-            'metadata': self.get_summary_statistics(),
-            'files': self.inventory
-        }
-        
-        with open(output_file, 'w', encoding='utf-8') as f:
-            json.dump(export_data, f, indent=2, ensure_ascii=False)
-
-    def export_markdown(self, output_file: str):
-        """Export inventory to Markdown format."""
-        stats = self.get_summary_statistics()
-        
-        with open(output_file, 'w', encoding='utf-8') as f:
-            f.write("# Basic Memory - Legal File Inventory\n\n")
-            f.write(f"**Generated:** {datetime.now().isoformat()}\n\n")
-            f.write(f"**Repository:** {stats.get('repository_path', 'Unknown')}\n\n")
-            
-            # Summary statistics
-            f.write("## Summary Statistics\n\n")
-            f.write(f"- **Total Files:** {stats.get('total_files', 0)}\n")
-            f.write(f"- **Total Contributors:** {stats.get('total_contributors', 0)}\n\n")
-            
-            # Categories
-            if 'categories' in stats:
-                f.write("### Files by Category\n\n")
-                for category, count in sorted(stats['categories'].items()):
-                    f.write(f"- **{category}:** {count} files\n")
-                f.write("\n")
-            
-            # Top contributors
-            if 'contributor_file_counts' in stats:
-                f.write("### Top Contributors by Files Modified\n\n")
-                sorted_contributors = sorted(
-                    stats['contributor_file_counts'].items(), 
-                    key=lambda x: x[1], 
-                    reverse=True
-                )[:10]
-                for contributor, count in sorted_contributors:
-                    f.write(f"- **{contributor}:** {count} files\n")
-                f.write("\n")
-            
-            # Detailed file listing
-            f.write("## Detailed File Inventory\n\n")
-            f.write("| File Path | Category | Size (bytes) | Primary Author | Contributors |\n")
-            f.write("|-----------|----------|--------------|----------------|-------------|\n")
-            
-            for entry in sorted(self.inventory, key=lambda x: x['file_path']):
-                contributors_str = ', '.join(entry['contributors'].keys())[:50]
-                if len(contributors_str) == 50:
-                    contributors_str += "..."
-                
-                f.write(f"| {entry['file_path']} | {entry['category']} | "
-                       f"{entry['file_size_bytes']} | {entry['primary_author']} | "
-                       f"{contributors_str} |\n")
-
-def main():
-    parser = argparse.ArgumentParser(
-        description="Generate legal file inventory for Basic Memory repository"
-    )
-    parser.add_argument(
-        '--output', '-o',
-        default='basic_memory_legal_inventory.csv',
-        help='Output file path (default: basic_memory_legal_inventory.csv)'
-    )
-    parser.add_argument(
-        '--format', '-f',
-        choices=['csv', 'json', 'markdown'],
-        default='csv',
-        help='Output format (default: csv)'
-    )
-    parser.add_argument(
-        '--repo-path', '-r',
-        default='.',
-        help='Path to repository (default: current directory)'
-    )
-    
-    args = parser.parse_args()
-    
-    # Initialize and run the inventory generator
-    generator = FileInventoryGenerator(args.repo_path)
-    generator.scan_repository()
-    
-    # Export in requested format
-    if args.format == 'csv':
-        generator.export_csv(args.output)
-    elif args.format == 'json':
-        generator.export_json(args.output)
-    elif args.format == 'markdown':
-        generator.export_markdown(args.output)
-    
-    # Print summary
-    stats = generator.get_summary_statistics()
-    print("\n=== Legal File Inventory Complete ===")
-    print(f"Repository: {stats.get('repository_path', 'Unknown')}")
-    print(f"Total files inventoried: {stats.get('total_files', 0)}")
-    print(f"Total contributors identified: {stats.get('total_contributors', 0)}")
-    print(f"Output written to: {args.output}")
-    
-    # Show top contributors
-    if 'contributor_file_counts' in stats:
-        print("\nTop 5 contributors by files modified:")
-        sorted_contributors = sorted(
-            stats['contributor_file_counts'].items(),
-            key=lambda x: x[1],
-            reverse=True
-        )[:5]
-        for i, (contributor, count) in enumerate(sorted_contributors, 1):
-            print(f"  {i}. {contributor}: {count} files")
-
-if __name__ == '__main__':
-    main()

legal_inventory/basic_memory_inventory_20250730_110133.csv

@@ -1,272 +0,0 @@
-path,name,category,size_bytes,modified_time,primary_author,contributor_count,contributors_list,sha256_hash
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-src/basic_memory/schemas/search.py,search.py,source_code,3657,2025-06-21T00:01:59.522804,bm-claudeai (AI Assistant),3,bm-claudeai (AI Assistant) (claude@basicmachines.co); github-actions[bot] (AI Assistant) (41898282+github-actions[bot]@users.noreply.github.com); Paul Hernandez (60959+phernandez@users.noreply.github.com),cb032c0c60102b6b0ed934f995cf9d6bf93aece296d71d537a75e8ae61c75afe
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-src/basic_memory/services/context_service.py,context_service.py,source_code,14462,2025-06-21T00:01:59.672086,bm-claudeai (AI Assistant),3,bm-claudeai (AI Assistant) (claude@basicmachines.co); github-actions[bot] (AI Assistant) (41898282+github-actions[bot]@users.noreply.github.com); Paul Hernandez (paulmh@gmail.com),e1178b005e6a89f03d6b239e3c6b152aeb30d535a3f280734440a3aec16228f2
-src/basic_memory/services/directory_service.py,directory_service.py,source_code,6017,2025-06-21T00:01:59.648501,Paul Hernandez,2,Paul Hernandez (60959+phernandez@users.noreply.github.com); bm-claudeai (AI Assistant) (claude@basicmachines.co),fd838f5ec79033892777b3c8140868f4b57f13e1658d513959524a434b9f959b
-src/basic_memory/services/entity_service.py,entity_service.py,source_code,30440,2025-07-03T18:43:10.083956,Paul Hernandez,4,Paul Hernandez (paul@basicmachines.co); Drew Cain (groksrc@users.noreply.github.com); bm-claudeai (AI Assistant) (claude@basicmachines.co); github-actions[bot] (AI Assistant) (41898282+github-actions[bot]@users.noreply.github.com),7cd5163eca6b8a0772e838c8c869e478166763cd6a2d745b0b9aa5c25a65baee
-src/basic_memory/services/exceptions.py,exceptions.py,source_code,390,2025-06-21T00:01:59.668908,bm-claudeai (AI Assistant),2,bm-claudeai (AI Assistant) (claude@basicmachines.co); Paul Hernandez (paulmh@gmail.com),a158d0af9d1742a9c5ab5f8c34a062948d9286d1c3c72a5abf20e4d547b21e1c
-src/basic_memory/services/file_service.py,file_service.py,source_code,10059,2025-06-21T00:01:59.641785,Paul Hernandez,2,Paul Hernandez (60959+phernandez@users.noreply.github.com); bm-claudeai (AI Assistant) (claude@basicmachines.co),8c2ae69c4913438b7d1c5ecbfcce812fbb5d0ea8e3cedcbd8694e8f40cf086f3
-src/basic_memory/services/initialization.py,initialization.py,source_code,6715,2025-07-08T20:39:18.344482,Paul Hernandez,3,Paul Hernandez (60959+phernandez@users.noreply.github.com); Drew Cain (groksrc@users.noreply.github.com); bm-claudeai (AI Assistant) (claude@basicmachines.co),4dde58b799cf4ac90631e59949b55b3355a93bdf99df0d9c2408c0cea67e10c4
-src/basic_memory/services/link_resolver.py,link_resolver.py,source_code,4594,2025-07-01T08:33:22.084908,Paul Hernandez,3,Paul Hernandez (paul@basicmachines.co); bm-claudeai (AI Assistant) (claude@basicmachines.co); github-actions[bot] (AI Assistant) (41898282+github-actions[bot]@users.noreply.github.com),d7efd516cbea753e6b5411def09aeaeb7539f5743487119ecf163c736e138a8c
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-src/basic_memory/services/search_service.py,search_service.py,source_code,12782,2025-06-21T00:01:59.665439,Paul Hernandez,2,Paul Hernandez (paul@basicmachines.co); bm-claudeai (AI Assistant) (claude@basicmachines.co),7392b2d2e7f3ed83c5807855ccd450e0e79c17f254aedee700bce9323a1b5b83
-src/basic_memory/services/service.py,service.py,source_code,336,2025-06-21T00:01:59.636167,Paul Hernandez,1,Paul Hernandez (phernandez@basicmachines.co),57e77ff20395d3bcc62100e92fe2acaacdd937d977a9fdc764e2b57ff60d4da8
-src/basic_memory/services/sync_status_service.py,sync_status_service.py,source_code,7504,2025-07-03T18:43:10.084229,Paul Hernandez,1,Paul Hernandez (60959+phernandez@users.noreply.github.com),0a025d689e8e16f1632872104952105fc904537f3d32bcff592eb1f1dc76fbb7
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-src/basic_memory/sync/background_sync.py,background_sync.py,source_code,726,2025-07-08T20:39:18.345062,Paul Hernandez,2,Paul Hernandez (60959+phernandez@users.noreply.github.com); bm-claudeai (AI Assistant) (claude@basicmachines.co),549af64ae91128b76c6df07ef517b82de85ca4ad796be44b5c0141fac01d4513
-src/basic_memory/sync/sync_service.py,sync_service.py,source_code,23387,2025-07-01T08:33:22.086507,Paul Hernandez,3,Paul Hernandez (paul@basicmachines.co); bm-claudeai (AI Assistant) (claude@basicmachines.co); github-actions[bot] (AI Assistant) (41898282+github-actions[bot]@users.noreply.github.com),0310b927561370f593980d07773bce641b618b8fbf2d9e3890d174290a0344fc
-src/basic_memory/sync/watch_service.py,watch_service.py,source_code,15316,2025-06-26T09:28:51.859209,bm-claudeai (AI Assistant),2,bm-claudeai (AI Assistant) (claude@basicmachines.co); Paul Hernandez (60959+phernandez@users.noreply.github.com),240ba6ac7523575945f4db442b7da3820d26c9605f2d7a2d357c4e35e215f523
-src/basic_memory/templates/prompts/continue_conversation.hbs,continue_conversation.hbs,templates,3076,2025-07-01T08:33:22.086792,Drew Cain,2,Drew Cain (groksrc@users.noreply.github.com); bm-claudeai (AI Assistant) (claude@basicmachines.co),b6bac31d25c0e52d0909b2273285092f4e31bc219107f92ed511cd407b65e992
-src/basic_memory/templates/prompts/search.hbs,search.hbs,templates,3098,2025-05-25T10:07:54.520119,bm-claudeai (AI Assistant),1,bm-claudeai (AI Assistant) (claude@basicmachines.co),1f570222c1caa78542d46ac7d8a79407ca467b9bd714fa9bd953e8b72a667820
-src/basic_memory/utils.py,utils.py,source_code,8654,2025-07-30T09:39:45.725428,jope-bm,5,jope-bm (joe@basicmemory.com); Paul Hernandez (60959+phernandez@users.noreply.github.com); Drew Cain (groksrc@users.noreply.github.com); andyxinweiminicloud (andyxinweimin263@icloud.com); github-actions[bot] (AI Assistant) (41898282+github-actions[bot]@users.noreply.github.com),111f343e3367339730e081c08acf4613667be574f946126513b5d82da3086bed
-test-int/conftest.py,conftest.py,source_code,8203,2025-07-08T20:39:18.345735,Paul Hernandez,1,Paul Hernandez (60959+phernandez@users.noreply.github.com),7231e1bc76cddc7c94433e853825dc0165b103bedf996c2c24eda6ae32fff5ad
-test-int/mcp/test_build_context_validation.py,test_build_context_validation.py,source_code,6469,2025-07-08T20:39:18.346021,Paul Hernandez,1,Paul Hernandez (60959+phernandez@users.noreply.github.com),ee61d6b15cee0194fd74c1bcf9361d5a839f6081c7d571ef081da8fcefe1bbf2
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-test-int/mcp/test_edit_note_integration.py,test_edit_note_integration.py,source_code,19822,2025-07-08T20:39:18.346730,Paul Hernandez,1,Paul Hernandez (60959+phernandez@users.noreply.github.com),9ba704badd05808aee0b5a686b7e250e1c865229ec92dab561cba5287b6f6fc6
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-test-int/mcp/test_move_note_integration.py,test_move_note_integration.py,source_code,19825,2025-07-08T20:39:18.347344,Paul Hernandez,1,Paul Hernandez (60959+phernandez@users.noreply.github.com),cbb17688d0f9551306a7520b059ace7f7dfba70fc20bf0ec98b1148000d7ad7d
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-tests/Non-MarkdownFileSupport.pdf,Non-MarkdownFileSupport.pdf,other,106751,2025-02-23T17:31:23.206428,Paul Hernandez,1,Paul Hernandez (paulmh@gmail.com),4aa96f9d0ee830ef6a1ec92243f302bbe2fa8971b84945f4eb5e276bf1ffde96
-tests/Screenshot.png,Screenshot.png,other,190076,2025-02-23T17:31:23.207771,Paul Hernandez,1,Paul Hernandez (paulmh@gmail.com),dd82612fe013c39810d28ae0f2bbcca6ab2c9925b035d7720bb02493ddf5d0a9
-tests/__init__.py,__init__.py,source_code,141,2025-06-21T00:01:46.216456,Paul Hernandez,1,Paul Hernandez (paulmh@gmail.com),2ac5605e69ad8829e96b3689632536539f1cdd3149a29c1903f25af0793a5d65
-tests/api/conftest.py,conftest.py,source_code,1404,2025-06-21T00:01:46.359728,Paul Hernandez,2,Paul Hernandez (paul@basicmachines.co); bm-claudeai (AI Assistant) (claude@basicmachines.co),ea46cde47a37c1f43fe079e48f5d0de8007155a0187f4445abc4f2ffde9c1791
-tests/api/test_async_client.py,test_async_client.py,source_code,1382,2025-07-30T09:39:45.725666,jope-bm,2,jope-bm (joe@basicmemory.com); Paul Hernandez (60959+phernandez@users.noreply.github.com),a2f96226a75e5cff2326ca48ddccea4915964d83e529f7b99958bc233ccdc31a
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-tests/api/test_importer_router.py,test_importer_router.py,source_code,16578,2025-06-21T00:01:46.368070,Paul Hernandez,2,Paul Hernandez (60959+phernandez@users.noreply.github.com); bm-claudeai (AI Assistant) (claude@basicmachines.co),03edf6e7404c7350afe76e54ea2bf0d66f668bcdb49f59702067a67b3694309d
-tests/api/test_knowledge_router.py,test_knowledge_router.py,source_code,45771,2025-07-01T08:33:22.090490,Paul Hernandez,3,Paul Hernandez (paul@basicmachines.co); bm-claudeai (AI Assistant) (claude@basicmachines.co); github-actions[bot] (AI Assistant) (41898282+github-actions[bot]@users.noreply.github.com),43a5f91ae1fb9038e65c09701336fbdc4dbf40c8319c94727e6312fda9d6d56e
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-tests/api/test_prompt_router.py,test_prompt_router.py,source_code,5046,2025-06-21T00:01:46.396588,bm-claudeai (AI Assistant),1,bm-claudeai (AI Assistant) (claude@basicmachines.co),9115995b7dd8b44d8a9c06c5e1bbb177618286675a769889e35ac16f26fd9897
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-tests/cli/test_cli_tools.py,test_cli_tools.py,source_code,13528,2025-06-21T00:01:46.318964,Paul Hernandez,2,Paul Hernandez (paul@basicmachines.co); bm-claudeai (AI Assistant) (claude@basicmachines.co),befb8cab50132e26a1b13b82ce8e93a3258282cf157a4230214bfcefeae65102
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-tests/markdown/test_observation_edge_cases.py,test_observation_edge_cases.py,source_code,4295,2025-06-21T00:01:46.209598,Paul Hernandez,1,Paul Hernandez (paulmh@gmail.com),6f1ab7684bfa8b02af0e0c42b3d7aed91fcd0b1c6288cbc9b6d6943c166979fa
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-tests/mcp/test_tool_delete_note.py,test_tool_delete_note.py,source_code,4208,2025-07-01T08:33:22.095578,Paul Hernandez,1,Paul Hernandez (paul@basicmachines.co),4cbf3ba4313438651b0608d5b25faf1400f7bd6a78af630351aecd4457800895
-tests/mcp/test_tool_edit_note.py,test_tool_edit_note.py,source_code,13503,2025-07-03T18:43:10.084890,Drew Cain,2,Drew Cain (groksrc@gmail.com); Paul Hernandez (60959+phernandez@users.noreply.github.com),dd441969aa54b3739f2d9202d3feaf46aee807ec51e01a13ef41eda52743944f
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-tests/repository/test_relation_repository.py,test_relation_repository.py,source_code,11980,2025-06-21T00:01:46.167567,bm-claudeai (AI Assistant),2,bm-claudeai (AI Assistant) (claude@basicmachines.co); Paul Hernandez (phernandez@basicmachines.co),fcdbdf40f7b56145b98eedde5ead64ef6187e859adde48cc09f5a97754757428
-tests/repository/test_repository.py,test_repository.py,source_code,5996,2025-06-21T00:01:46.152691,Paul Hernandez,1,Paul Hernandez (phernandez@basicmachines.co),3a6d4ca0b7a438a30ae504f5eac22874d4e1a937a4246e90efad46c90f0e1c95
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legal_inventory_main/basic_memory_inventory_20250730_094006.csv

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-src/basic_memory/db.py,db.py,source_code,7428,2025-07-08T20:39:18.341550,Paul Hernandez,3,Paul Hernandez (60959+phernandez@users.noreply.github.com); Drew Cain (groksrc@users.noreply.github.com); bm-claudeai (AI Assistant) (claude@basicmachines.co),25e053b0b3f9e8fa823b05fc099001efe8a3a4f6e0f80728e5079ba45aa406d8
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-src/basic_memory/schemas/base.py,base.py,source_code,6738,2025-07-01T08:33:22.082193,Paul Hernandez,1,Paul Hernandez (paul@basicmachines.co),171f7b0c4ab33abef2f7379eb1e3bda950586ce7edff83907fd12255f84e267e
-src/basic_memory/schemas/delete.py,delete.py,source_code,1180,2025-06-21T00:01:59.502563,Paul Hernandez,1,Paul Hernandez (phernandez@basicmachines.co),50047624af7d58c8f780ffb2a065a51c3dde64492f9534917fc42860813e59fc
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-src/basic_memory/schemas/importer.py,importer.py,source_code,693,2025-07-30T09:39:45.724633,jope-bm,2,jope-bm (joe@basicmemory.com); bm-claudeai (AI Assistant) (claude@basicmachines.co),ac33df423ca32b28ce7b6ea9c29d541f8783a86c0c29f78db35163bf93f139cd
-src/basic_memory/schemas/memory.py,memory.py,source_code,5833,2025-07-03T18:43:10.083167,Drew Cain,3,Drew Cain (groksrc@users.noreply.github.com); Paul Hernandez (paul@basicmachines.co); bm-claudeai (AI Assistant) (claude@basicmachines.co),acb4a953a553feca672c4895798a7d948ec51f922f75b66dd7d55716e3bebed3
-src/basic_memory/schemas/project_info.py,project_info.py,source_code,7047,2025-07-01T08:33:22.083248,Paul Hernandez,2,Paul Hernandez (paul@basicmachines.co); bm-claudeai (AI Assistant) (claude@basicmachines.co),7dc3635297b6e7fe6e3262b2d78da26f7a79a846a4cecd5624f2e4828979cf2c
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-src/basic_memory/services/entity_service.py,entity_service.py,source_code,30440,2025-07-03T18:43:10.083956,Paul Hernandez,4,Paul Hernandez (paul@basicmachines.co); Drew Cain (groksrc@users.noreply.github.com); bm-claudeai (AI Assistant) (claude@basicmachines.co); github-actions[bot] (AI Assistant) (41898282+github-actions[bot]@users.noreply.github.com),7cd5163eca6b8a0772e838c8c869e478166763cd6a2d745b0b9aa5c25a65baee
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-src/basic_memory/services/file_service.py,file_service.py,source_code,10059,2025-06-21T00:01:59.641785,Paul Hernandez,2,Paul Hernandez (60959+phernandez@users.noreply.github.com); bm-claudeai (AI Assistant) (claude@basicmachines.co),8c2ae69c4913438b7d1c5ecbfcce812fbb5d0ea8e3cedcbd8694e8f40cf086f3
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-src/basic_memory/services/link_resolver.py,link_resolver.py,source_code,4594,2025-07-01T08:33:22.084908,Paul Hernandez,3,Paul Hernandez (paul@basicmachines.co); bm-claudeai (AI Assistant) (claude@basicmachines.co); github-actions[bot] (AI Assistant) (41898282+github-actions[bot]@users.noreply.github.com),d7efd516cbea753e6b5411def09aeaeb7539f5743487119ecf163c736e138a8c
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-src/basic_memory/services/sync_status_service.py,sync_status_service.py,source_code,7504,2025-07-03T18:43:10.084229,Paul Hernandez,1,Paul Hernandez (60959+phernandez@users.noreply.github.com),0a025d689e8e16f1632872104952105fc904537f3d32bcff592eb1f1dc76fbb7
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-src/basic_memory/sync/sync_service.py,sync_service.py,source_code,23387,2025-07-01T08:33:22.086507,Paul Hernandez,3,Paul Hernandez (paul@basicmachines.co); bm-claudeai (AI Assistant) (claude@basicmachines.co); github-actions[bot] (AI Assistant) (41898282+github-actions[bot]@users.noreply.github.com),0310b927561370f593980d07773bce641b618b8fbf2d9e3890d174290a0344fc
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-tests/api/test_template_loader_helpers.py,test_template_loader_helpers.py,source_code,7445,2025-06-21T00:01:46.372114,bm-claudeai (AI Assistant),1,bm-claudeai (AI Assistant) (claude@basicmachines.co),8dd35f11c9b3f2d96ac36263edf4430308728c04c9da543b1cb845b96ab20aa7
-tests/cli/conftest.py,conftest.py,source_code,1185,2025-07-01T08:33:22.090848,Paul Hernandez,1,Paul Hernandez (paul@basicmachines.co),c3c73da7ad73224931e1fba4ebd70792221be607bfb1488bb5c9420bba03bdb8
-tests/cli/test_cli_tools.py,test_cli_tools.py,source_code,13528,2025-06-21T00:01:46.318964,Paul Hernandez,2,Paul Hernandez (paul@basicmachines.co); bm-claudeai (AI Assistant) (claude@basicmachines.co),befb8cab50132e26a1b13b82ce8e93a3258282cf157a4230214bfcefeae65102
-tests/cli/test_import_chatgpt.py,test_import_chatgpt.py,source_code,6719,2025-07-08T20:39:18.350234,Paul Hernandez,2,Paul Hernandez (60959+phernandez@users.noreply.github.com); bm-claudeai (AI Assistant) (claude@basicmachines.co),df447335545248e2fb2417af33f8cc2f0143bd413a1783e41f89605de305b7c8
-tests/cli/test_import_claude_conversations.py,test_import_claude_conversations.py,legal,5028,2025-07-08T20:39:18.350607,Paul Hernandez,2,Paul Hernandez (60959+phernandez@users.noreply.github.com); bm-claudeai (AI Assistant) (claude@basicmachines.co),ac4b3b9dfc331fa7fa32a2941c027ff8b6585a94a5ccfaaf0a4affe5cf19c00c
-tests/cli/test_import_claude_projects.py,test_import_claude_projects.py,legal,4585,2025-07-08T20:39:18.350885,Paul Hernandez,2,Paul Hernandez (60959+phernandez@users.noreply.github.com); bm-claudeai (AI Assistant) (claude@basicmachines.co),7eaab3d491d50ca59c8ba015ecd5740a5feae94d970ee17559c6df9d8558c2cc
-tests/cli/test_import_memory_json.py,test_import_memory_json.py,source_code,4891,2025-07-30T09:39:45.726290,jope-bm,3,jope-bm (joe@basicmemory.com); bm-claudeai (AI Assistant) (claude@basicmachines.co); Paul Hernandez (60959+phernandez@users.noreply.github.com),d6734ce059dacf97bc764d848b2e2a6ba52fa96871bc331ec9d2ddc60b766bb6
-tests/cli/test_project_commands.py,test_project_commands.py,source_code,6578,2025-07-30T09:39:45.726703,jope-bm,3,jope-bm (joe@basicmemory.com); Paul Hernandez (60959+phernandez@users.noreply.github.com); bm-claudeai (AI Assistant) (claude@basicmachines.co),51e2ac7ff44b0d1a1db6da406c5c2e6aebceb1b63a1e8d5ab51bbaa834507157
-tests/cli/test_project_info.py,test_project_info.py,source_code,3874,2025-07-01T08:33:22.091600,Paul Hernandez,2,Paul Hernandez (paul@basicmachines.co); bm-claudeai (AI Assistant) (claude@basicmachines.co),0b08950e95a5f276f14c56f6fe99af4d41b8f04548e9b7746f807c5ac4155578
-tests/cli/test_status.py,test_status.py,source_code,4160,2025-07-01T08:33:22.091978,Paul Hernandez,2,Paul Hernandez (paul@basicmachines.co); bm-claudeai (AI Assistant) (claude@basicmachines.co),a1ff89fdac4bf57ba03be92ac79b8ca3210af0b1132d5a2bd0fc0c253fcbf988
-tests/cli/test_sync.py,test_sync.py,source_code,3864,2025-07-08T20:43:47.816788,Paul Hernandez,2,Paul Hernandez (60959+phernandez@users.noreply.github.com); bm-claudeai (AI Assistant) (claude@basicmachines.co),77e0f6b42b584a5acfda3c2ff194ff5e71ca57a40cb4484d563f5482bbbb4c0f
-tests/cli/test_version.py,test_version.py,source_code,289,2025-06-21T00:01:46.305368,Paul Hernandez,1,Paul Hernandez (60959+phernandez@users.noreply.github.com),db95665178a32d391bd83011d073db269cefba9da8a4dc4d3e392d47bc0e0a8f
-tests/conftest.py,conftest.py,source_code,15286,2025-07-08T20:39:18.351368,Paul Hernandez,2,Paul Hernandez (60959+phernandez@users.noreply.github.com); bm-claudeai (AI Assistant) (claude@basicmachines.co),c6f38f103ce58144ffe4562f0c47dad849974e96327f02805e854447e19bc411
-tests/importers/test_importer_base.py,test_importer_base.py,source_code,4329,2025-07-08T20:39:00.549594,bm-claudeai (AI Assistant),1,bm-claudeai (AI Assistant) (claude@basicmachines.co),da872a073f2b90fda3c98c9f44cf45884f4f682d91ec1b1f931d42c34eee1939
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-tests/markdown/test_entity_parser.py,test_entity_parser.py,source_code,8669,2025-06-21T00:01:46.206579,Paul Hernandez,2,Paul Hernandez (60959+phernandez@users.noreply.github.com); github-actions[bot] (AI Assistant) (41898282+github-actions[bot]@users.noreply.github.com),496fdab6fe164634f8223f827585a4c0dedd30ccea7b0b69dc79004ad0996de2
-tests/markdown/test_markdown_plugins.py,test_markdown_plugins.py,source_code,5139,2025-06-21T00:01:46.200759,Paul Hernandez,1,Paul Hernandez (phernandez@basicmachines.co),9624d73462aadcd47fb0edd0d87880959a8982eecfa39529f21e3b292c34cb83
-tests/markdown/test_markdown_processor.py,test_markdown_processor.py,source_code,5728,2025-06-21T00:01:46.194175,Paul Hernandez,1,Paul Hernandez (60959+phernandez@users.noreply.github.com),35042aa57dd2aeed848c624aa7f69decfb18e83c3b217eca1fdacfc4a10831db
-tests/markdown/test_observation_edge_cases.py,test_observation_edge_cases.py,source_code,4295,2025-06-21T00:01:46.209598,Paul Hernandez,1,Paul Hernandez (paulmh@gmail.com),6f1ab7684bfa8b02af0e0c42b3d7aed91fcd0b1c6288cbc9b6d6943c166979fa
-tests/markdown/test_parser_edge_cases.py,test_parser_edge_cases.py,source_code,5142,2025-06-21T00:01:46.213291,Paul Hernandez,1,Paul Hernandez (phernandez@basicmachines.co),d511d7d1187e3c1d3a8d3e0ab9efc9e68e84115c46811e7a9dc21eca9a87d520
-tests/markdown/test_relation_edge_cases.py,test_relation_edge_cases.py,source_code,3952,2025-06-21T00:01:46.203846,Paul Hernandez,1,Paul Hernandez (phernandez@basicmachines.co),f8e2016308f84139342cc37ec6e389ffe52d7eb46f998ee327c7f0d5bba3ad9b
-tests/markdown/test_task_detection.py,test_task_detection.py,source_code,401,2025-06-21T00:01:46.191444,Paul Hernandez,1,Paul Hernandez (paulmh@gmail.com),37fe91a689742033a0eb76723557e31c2a85e591133383b3887572cb714db2a5
-tests/mcp/conftest.py,conftest.py,source_code,1761,2025-07-08T20:39:18.351554,Paul Hernandez,2,Paul Hernandez (60959+phernandez@users.noreply.github.com); bm-claudeai (AI Assistant) (claude@basicmachines.co),350b2ca42c52ef76e002deddb65fc0eccb9f8989bd26078ea1c100e3b93bae3f
-tests/mcp/test_prompts.py,test_prompts.py,source_code,5989,2025-07-01T08:33:22.093691,Paul Hernandez,2,Paul Hernandez (paul@basicmachines.co); bm-claudeai (AI Assistant) (claude@basicmachines.co),e3b2ee5b4bc120b5043225ebdbf73eadd71be9c3d9d8e1fdd66a24a8ff11a780
-tests/mcp/test_resource_project_info.py,test_resource_project_info.py,source_code,4885,2025-07-01T08:33:22.094085,Paul Hernandez,2,Paul Hernandez (paul@basicmachines.co); bm-claudeai (AI Assistant) (claude@basicmachines.co),6a043736789b239c8d4ae00d1a5332a0fc3bed4038fe3388970ba97dc7431a93
-tests/mcp/test_resources.py,test_resources.py,source_code,549,2025-07-01T08:33:22.094481,Paul Hernandez,1,Paul Hernandez (paul@basicmachines.co),77a6396b9b8a9d3b3d202e438243ca6178d87fd7680c9fc063ee013f2042aa4c
-tests/mcp/test_tool_build_context.py,test_tool_build_context.py,source_code,3714,2025-07-01T08:33:22.094661,Paul Hernandez,2,Paul Hernandez (paul@basicmachines.co); bm-claudeai (AI Assistant) (claude@basicmachines.co),5f0a39fdb652605335ed54aa91fe994262441bb7ba46f381c46ebca882fc23f2
-tests/mcp/test_tool_canvas.py,test_tool_canvas.py,source_code,7997,2025-07-01T08:33:22.094982,Paul Hernandez,1,Paul Hernandez (paul@basicmachines.co),c517bb1f9edc77b76fbeb483dfcb2dd57de9f0b80a10738708bc90cbe388dc9e
-tests/mcp/test_tool_delete_note.py,test_tool_delete_note.py,source_code,4208,2025-07-01T08:33:22.095578,Paul Hernandez,1,Paul Hernandez (paul@basicmachines.co),4cbf3ba4313438651b0608d5b25faf1400f7bd6a78af630351aecd4457800895
-tests/mcp/test_tool_edit_note.py,test_tool_edit_note.py,source_code,13503,2025-07-03T18:43:10.084890,Drew Cain,2,Drew Cain (groksrc@gmail.com); Paul Hernandez (60959+phernandez@users.noreply.github.com),dd441969aa54b3739f2d9202d3feaf46aee807ec51e01a13ef41eda52743944f
-tests/mcp/test_tool_list_directory.py,test_tool_list_directory.py,source_code,7730,2025-07-01T08:33:22.096737,Paul Hernandez,1,Paul Hernandez (paul@basicmachines.co),cfbb5c06bcfe74ea60f31051eb9b03ac80b86232b053c188bf3b172132f7c0f5
-tests/mcp/test_tool_move_note.py,test_tool_move_note.py,source_code,25851,2025-07-30T09:39:45.727347,jope-bm,2,jope-bm (joe@basicmemory.com); Paul Hernandez (paul@basicmachines.co),c9f95158503fa42e37532aaa35027538fa49cea718d059d570cf547d31f01043
-tests/mcp/test_tool_read_content.py,test_tool_read_content.py,source_code,19442,2025-07-30T09:39:45.727526,jope-bm,1,jope-bm (joe@basicmemory.com),1817e32f997b06dbdabf02864d0c70584c1cd80bf1fae8dfbef649de79434bc5
-tests/mcp/test_tool_read_note.py,test_tool_read_note.py,source_code,22991,2025-07-30T09:39:45.727746,jope-bm,4,jope-bm (joe@basicmemory.com); Paul Hernandez (paul@basicmachines.co); Amadeusz Wieczorek (git@amadeusw.com); github-actions[bot] (AI Assistant) (41898282+github-actions[bot]@users.noreply.github.com),4e13ea9ff977525aa62b6a8c22505ffe989329dc3e7d07b71e044cf43ef3ddfd
-tests/mcp/test_tool_recent_activity.py,test_tool_recent_activity.py,source_code,3983,2025-07-01T08:33:22.098561,Paul Hernandez,2,Paul Hernandez (paul@basicmachines.co); bm-claudeai (AI Assistant) (claude@basicmachines.co),45414152cd45334b84df56f653146b7bd2939907548e7245a37207fdccfc4c87
-tests/mcp/test_tool_resource.py,test_tool_resource.py,source_code,6782,2025-07-01T08:33:22.098948,Paul Hernandez,2,Paul Hernandez (paul@basicmachines.co); github-actions[bot] (AI Assistant) (41898282+github-actions[bot]@users.noreply.github.com),3916ae1c4d458eee53d2c570b9bbb708ecd617de5a145c3a7552389954bc9195
-tests/mcp/test_tool_search.py,test_tool_search.py,source_code,10959,2025-07-03T18:43:10.085177,Drew Cain,3,Drew Cain (groksrc@gmail.com); Paul Hernandez (60959+phernandez@users.noreply.github.com); github-actions[bot] (AI Assistant) (41898282+github-actions[bot]@users.noreply.github.com),07839cf8e89d74ba05ec1dc55fa842444c1f0cc3d1587823b0ac3458ad89e87c
-tests/mcp/test_tool_sync_status.py,test_tool_sync_status.py,source_code,6331,2025-07-01T08:33:22.100021,Paul Hernandez,1,Paul Hernandez (paul@basicmachines.co),3f3566df5b9f3c66bb9b3bd77d4c05825480d0e85015305cb1b7ab9429c7a7ec
-tests/mcp/test_tool_utils.py,test_tool_utils.py,source_code,9228,2025-07-01T08:33:22.100561,Paul Hernandez,2,Paul Hernandez (paul@basicmachines.co); bm-claudeai (AI Assistant) (claude@basicmachines.co),b50789f7a78b0169f52dc8bd16e262510ed4a0ac130fce698d4be84af1fe2d31
-tests/mcp/test_tool_view_note.py,test_tool_view_note.py,source_code,10004,2025-07-01T08:33:22.101164,Paul Hernandez,1,Paul Hernandez (paul@basicmachines.co),385535ce791c3ab55db827cbcf27ea25ae85faf3a027f52df4eea052cede7f36
-tests/mcp/test_tool_write_note.py,test_tool_write_note.py,source_code,35136,2025-07-30T09:39:45.728137,jope-bm,3,jope-bm (joe@basicmemory.com); Drew Cain (groksrc@users.noreply.github.com); Paul Hernandez (60959+phernandez@users.noreply.github.com),45172de20cfc4f4436287573b4f5a94b8b616a360647af67ba1c6c343ccd41b8
-tests/repository/test_entity_repository.py,test_entity_repository.py,source_code,15498,2025-06-21T00:01:46.176265,bm-claudeai (AI Assistant),2,bm-claudeai (AI Assistant) (claude@basicmachines.co); Paul Hernandez (paulmh@gmail.com),8f5d1ff6cff7b640993ff73f463b1e7801a4dd69640fc55fa23dc58b865e9943
-tests/repository/test_entity_repository_upsert.py,test_entity_repository_upsert.py,source_code,16983,2025-07-03T18:43:10.085482,Paul Hernandez,2,Paul Hernandez (paul@basicmachines.co); Drew Cain (groksrc@users.noreply.github.com),ee0ecd6f4ff8b31838bd6de6fb1018af437e02813d8315c06f4e20a6b78a0572
-tests/repository/test_observation_repository.py,test_observation_repository.py,source_code,11786,2025-06-21T00:01:46.158862,bm-claudeai (AI Assistant),2,bm-claudeai (AI Assistant) (claude@basicmachines.co); Paul Hernandez (phernandez@basicmachines.co),3006d392ad94dcc9b3ae031d63a1af6935624534389dd025de70d4c9e112aa0b
-tests/repository/test_project_info_repository.py,test_project_info_repository.py,source_code,1186,2025-06-21T00:01:46.161876,bm-claudeai (AI Assistant),1,bm-claudeai (AI Assistant) (claude@basicmachines.co),dbce7ae7350403cbc37343c2e3e68e4d2255e247006aaa6c495a7ce8bfddea7d
-tests/repository/test_project_repository.py,test_project_repository.py,source_code,10511,2025-07-30T09:39:45.728536,jope-bm,2,jope-bm (joe@basicmemory.com); bm-claudeai (AI Assistant) (claude@basicmachines.co),279a3324635b1b515c18003bd1875cf230fef1192cadef9ca426846783717e75
-tests/repository/test_relation_repository.py,test_relation_repository.py,source_code,11980,2025-06-21T00:01:46.167567,bm-claudeai (AI Assistant),2,bm-claudeai (AI Assistant) (claude@basicmachines.co); Paul Hernandez (phernandez@basicmachines.co),fcdbdf40f7b56145b98eedde5ead64ef6187e859adde48cc09f5a97754757428
-tests/repository/test_repository.py,test_repository.py,source_code,5996,2025-06-21T00:01:46.152691,Paul Hernandez,1,Paul Hernandez (phernandez@basicmachines.co),3a6d4ca0b7a438a30ae504f5eac22874d4e1a937a4246e90efad46c90f0e1c95
-tests/repository/test_search_repository.py,test_search_repository.py,source_code,25471,2025-07-03T18:43:10.086041,Paul Hernandez,2,Paul Hernandez (paul@basicmachines.co); bm-claudeai (AI Assistant) (claude@basicmachines.co),805b5cc55a53ae9d6e86c0de735c7f38ac9fd92c23194b0150fa3e7f5507a146
-tests/schemas/test_memory_url.py,test_memory_url.py,source_code,2000,2025-06-21T00:01:46.346515,Paul Hernandez,1,Paul Hernandez (paulmh@gmail.com),946fa6c48534f41c8b9cc27bbad164d3e3673a79afa84fbb439fae4cd26c504b
-tests/schemas/test_memory_url_validation.py,test_memory_url_validation.py,source_code,9338,2025-07-01T08:33:22.103247,Paul Hernandez,1,Paul Hernandez (paul@basicmachines.co),7054c3a3cdb8e05d2ffd254ed298908ff3d48a0a3927d960975eae1ab9beeb38
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-tests/services/test_context_service.py,test_context_service.py,source_code,8833,2025-06-21T00:01:46.446200,bm-claudeai (AI Assistant),2,bm-claudeai (AI Assistant) (claude@basicmachines.co); Paul Hernandez (paulmh@gmail.com),ab49d21a05d5364e7e8a2f00b07aabe1109b7417698e0acd92792e2cb5f22732
-tests/services/test_directory_service.py,test_directory_service.py,source_code,6854,2025-06-21T00:01:46.457258,Paul Hernandez,2,Paul Hernandez (60959+phernandez@users.noreply.github.com); bm-claudeai (AI Assistant) (claude@basicmachines.co),a0c765fb6bd1a75b6ba4592b1df344c48273b6ab03ba6bd15d2b5e840eb2d521
-tests/services/test_entity_service.py,test_entity_service.py,source_code,59278,2025-07-03T18:43:10.086674,Paul Hernandez,3,Paul Hernandez (paul@basicmachines.co); Drew Cain (groksrc@users.noreply.github.com); bm-claudeai (AI Assistant) (claude@basicmachines.co),d7d495756faa10b415d705cf26b69d2efbc5f190a834b6767386ff296629ea71
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-tests/sync/test_tmp_files.py,test_tmp_files.py,source_code,5930,2025-06-21T00:01:46.424277,Paul Hernandez,2,Paul Hernandez (60959+phernandez@users.noreply.github.com); bm-claudeai (AI Assistant) (claude@basicmachines.co),cead95a07b29f6c1ab933abe67f9648122f5f33d33753c8e4ab4934af96cbc25
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-tests/test_config.py,test_config.py,source_code,3680,2025-07-03T18:43:10.087558,Paul Hernandez,3,Paul Hernandez (paul@basicmachines.co); Drew Cain (groksrc@users.noreply.github.com); bm-claudeai (AI Assistant) (claude@basicmachines.co),6a246431cff739274efda895dfa28f38710289a73e645312f5fa05fce0885ec8
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-tests/utils/test_file_utils.py,test_file_utils.py,source_code,6199,2025-06-21T00:01:46.219673,Paul Hernandez,1,Paul Hernandez (60959+phernandez@users.noreply.github.com),4615bb20b92b8a79d9e086301f852b34c3360f17ecc209920d68528268ddeed4
-tests/utils/test_parse_tags.py,test_parse_tags.py,source_code,1691,2025-06-21T00:01:46.223400,Paul Hernandez,2,Paul Hernandez (60959+phernandez@users.noreply.github.com); github-actions[bot] (AI Assistant) (41898282+github-actions[bot]@users.noreply.github.com),b83afdf18dac8b3411bd0fab1301683217d3d1abceaf2d22c09e79c709efd8eb
-tests/utils/test_permalink_formatting.py,test_permalink_formatting.py,source_code,4193,2025-06-21T00:01:46.225738,Paul Hernandez,1,Paul Hernandez (60959+phernandez@users.noreply.github.com),d998a4ca846c78679728a918b6f71df67c30b6961ede3cffa609f2cf6ad160eb
-tests/utils/test_utf8_handling.py,test_utf8_handling.py,source_code,5791,2025-06-21T00:01:46.228483,Paul Hernandez,1,Paul Hernandez (60959+phernandez@users.noreply.github.com),50ec792e572af51cd2d996d4ddacbcfd3bbd79aa928818a90c42117451ea829f
-tests/utils/test_validate_project_path.py,test_validate_project_path.py,source_code,15346,2025-07-30T09:39:45.729224,jope-bm,1,jope-bm (joe@basicmemory.com),27a4bf2a9d277e6cd773619e5241b20175d211ec60c284361bec404fd99143f3
-uv.lock,uv.lock,other,232710,2025-07-30T09:39:36.619155,Paul Hernandez,3,Paul Hernandez (60959+phernandez@users.noreply.github.com); Drew Cain (groksrc@users.noreply.github.com); bm-claudeai (AI Assistant) (claude@basicmachines.co),caa1e3f6e66464b884a78cab77df2fe303fa3c0dc573be0196474b6d3c150581

legal_inventory_sample.md

@@ -1,294 +0,0 @@
-# Basic Memory - Legal File Inventory
-
-**Generated:** 2025-07-29T16:10:54.745774
-
-**Repository:** /Users/phernandez/dev/basicmachines/basic-memory
-
-## Summary Statistics
-
-- **Total Files:** 255
-- **Total Contributors:** 12
-
-### Files by Category
-
-- **Build/Deployment:** 2 files
-- **Configuration:** 6 files
-- **Database/Migration:** 1 files
-- **Documentation:** 6 files
-- **Legal/License:** 3 files
-- **Other:** 13 files
-- **Source Code:** 222 files
-- **Templates/Resources:** 2 files
-
-### Top Contributors by Files Modified
-
-- **phernandez:** 190 files
-- **Paul Hernandez:** 181 files
-- **bm-claudeai:** 135 files
-- **Drew Cain:** 24 files
-- **github-actions[bot]:** 20 files
-- **Amadeusz Wieczorek:** 2 files
-- **semantic-release:** 1 files
-- **Jason Noble:** 1 files
-- **Marc Baiza:** 1 files
-- **Matias Forbord:** 1 files
-
-## Detailed File Inventory
-
-| File Path | Category | Size (bytes) | Primary Author | Contributors |
-|-----------|----------|--------------|----------------|-------------|
-| .claude/commands/release/beta.md | Other | 3103 | phernandez | phernandez |
-| .claude/commands/release/changelog.md | Documentation | 4648 | phernandez | phernandez |
-| .claude/commands/release/release-check.md | Other | 3344 | phernandez | phernandez |
-| .claude/commands/release/release.md | Other | 2925 | phernandez | phernandez |
-| .claude/commands/test-live.md | Other | 18720 | phernandez | phernandez |
-| .claude/settings.local.json | Configuration | 3122 | Unknown |  |
-| .dockerignore | Other | 623 | Paul Hernandez | Paul Hernandez |
-| .python-version | Other | 5 | phernandez | phernandez |
-| CHANGELOG.md | Documentation | 53647 | semantic-release | semantic-release, phernandez |
-| CITATION.cff | Legal/License | 302 | phernandez | phernandez |
-| CLA.md | Legal/License | 1342 | phernandez | phernandez |
-| CLAUDE.md | Other | 12310 | Paul Hernandez | Paul Hernandez, phernandez, Ikko Eltociear Ashimin... |
-| CODE_OF_CONDUCT.md | Other | 509 | phernandez | phernandez |
-| CONTRIBUTING.md | Documentation | 7241 | phernandez | phernandez, Paul Hernandez |
-| Dockerfile | Build/Deployment | 856 | Paul Hernandez | Paul Hernandez, bm-claudeai |
-| LICENSE | Legal/License | 34523 | Paul Hernandez | Paul Hernandez |
-| README.md | Documentation | 16261 | phernandez | phernandez, bm-claudeai, Paul Hernandez, Jason Nob... |
-| SECURITY.md | Other | 303 | Paul Hernandez | Paul Hernandez |
-| docker-compose.yml | Configuration | 2534 | Paul Hernandez | Paul Hernandez, phernandez |
-| docs/AI Assistant Guide.md | Documentation | 16423 | Paul Hernandez | Paul Hernandez, phernandez |
-| docs/Docker.md | Documentation | 9088 | Paul Hernandez | Paul Hernandez, phernandez |
-| justfile | Build/Deployment | 5371 | phernandez | phernandez, Drew Cain |
-| legal_file_inventory.py | Source Code | 17407 | Unknown |  |
-| llms-install.md | Other | 2307 | phernandez | phernandez |
-| memory.json | Configuration | 90075 | phernandez | phernandez |
-| pyproject.toml | Configuration | 3279 | phernandez | phernandez, Paul Hernandez, bm-claudeai, Drew Cain... |
-| smithery.yaml | Configuration | 433 | bm-claudeai | bm-claudeai |
-| src/basic_memory/__init__.py | Source Code | 256 | phernandez | phernandez |
-| src/basic_memory/alembic/alembic.ini | Configuration | 3733 | phernandez | phernandez |
-| src/basic_memory/alembic/migrations.py | Source Code | 718 | Paul Hernandez | Paul Hernandez |
-| src/basic_memory/alembic/script.py.mako | Database/Migration | 635 | Paul Hernandez | Paul Hernandez |
-| src/basic_memory/alembic/versions/3dae7c7b1564_initial_schema.py | Source Code | 4363 | Paul Hernandez | Paul Hernandez |
-| src/basic_memory/alembic/versions/502b60eaa905_remove_required_from_entity_permalink.py | Source Code | 1840 | Paul Hernandez | Paul Hernandez |
-| src/basic_memory/alembic/versions/5fe1ab1ccebe_add_projects_table.py | Source Code | 4379 | bm-claudeai | bm-claudeai |
-| src/basic_memory/alembic/versions/647e7a75e2cd_project_constraint_fix.py | Source Code | 4210 | phernandez | phernandez |
-| src/basic_memory/alembic/versions/b3c3938bacdb_relation_to_name_unique_index.py | Source Code | 1428 | Paul Hernandez | Paul Hernandez |
-| src/basic_memory/alembic/versions/cc7172b46608_update_search_index_schema.py | Source Code | 3679 | Paul Hernandez | Paul Hernandez |
-| src/basic_memory/api/__init__.py | Source Code | 72 | phernandez | phernandez, Paul Hernandez |
-| src/basic_memory/api/app.py | Source Code | 2897 | bm-claudeai | phernandez, bm-claudeai, Paul Hernandez |
-| src/basic_memory/api/routers/__init__.py | Source Code | 398 | phernandez | phernandez, bm-claudeai |
-| src/basic_memory/api/routers/directory_router.py | Source Code | 2054 | Paul Hernandez | bm-claudeai, Paul Hernandez |
-| src/basic_memory/api/routers/importer_router.py | Source Code | 4513 | bm-claudeai | bm-claudeai |
-| src/basic_memory/api/routers/knowledge_router.py | Source Code | 9738 | Paul Hernandez | phernandez, Paul Hernandez, bm-claudeai |
-| src/basic_memory/api/routers/management_router.py | Source Code | 2730 | bm-claudeai | bm-claudeai, phernandez |
-| src/basic_memory/api/routers/memory_router.py | Source Code | 3003 | phernandez | phernandez, bm-claudeai, Paul Hernandez |
-| src/basic_memory/api/routers/project_router.py | Source Code | 8239 | bm-claudeai | bm-claudeai, phernandez, Paul Hernandez |
-| src/basic_memory/api/routers/prompt_router.py | Source Code | 9948 | bm-claudeai | bm-claudeai, phernandez |
-| src/basic_memory/api/routers/resource_router.py | Source Code | 8058 | Paul Hernandez | phernandez, Paul Hernandez |
-| src/basic_memory/api/routers/search_router.py | Source Code | 1226 | phernandez | phernandez, Paul Hernandez, bm-claudeai |
-| src/basic_memory/api/routers/utils.py | Source Code | 5159 | bm-claudeai | bm-claudeai, Drew Cain |
-| src/basic_memory/api/template_loader.py | Source Code | 8607 | bm-claudeai | bm-claudeai |
-| src/basic_memory/cli/__init__.py | Source Code | 33 | Paul Hernandez | Paul Hernandez |
-| src/basic_memory/cli/app.py | Source Code | 2268 | Paul Hernandez | Paul Hernandez, phernandez, bm-claudeai |
-| src/basic_memory/cli/commands/__init__.py | Source Code | 393 | Paul Hernandez | Paul Hernandez, phernandez |
-| src/basic_memory/cli/commands/db.py | Source Code | 1480 | Paul Hernandez | Paul Hernandez, phernandez, bm-claudeai |
-| src/basic_memory/cli/commands/import_chatgpt.py | Source Code | 2856 | Paul Hernandez | Paul Hernandez, bm-claudeai, phernandez |
-| src/basic_memory/cli/commands/import_claude_conversations.py | Source Code | 2946 | Paul Hernandez | Paul Hernandez, bm-claudeai, phernandez |
-| src/basic_memory/cli/commands/import_claude_projects.py | Source Code | 2891 | Paul Hernandez | Paul Hernandez, bm-claudeai, phernandez |
-| src/basic_memory/cli/commands/import_memory_json.py | Source Code | 2947 | Paul Hernandez | phernandez, bm-claudeai, Paul Hernandez |
-| src/basic_memory/cli/commands/mcp.py | Source Code | 2593 | phernandez | bm-claudeai, phernandez, Paul Hernandez |
-| src/basic_memory/cli/commands/project.py | Source Code | 12252 | phernandez | Paul Hernandez, phernandez, bm-claudeai |
-| src/basic_memory/cli/commands/status.py | Source Code | 5809 | phernandez | phernandez, bm-claudeai, Paul Hernandez |
-| src/basic_memory/cli/commands/sync.py | Source Code | 8213 | phernandez | phernandez, bm-claudeai, Paul Hernandez |
-| src/basic_memory/cli/commands/tool.py | Source Code | 9540 | phernandez | Paul Hernandez, phernandez, github-actions[bot] |
-| src/basic_memory/cli/main.py | Source Code | 465 | Paul Hernandez | Paul Hernandez, phernandez |
-| src/basic_memory/config.py | Source Code | 12620 | Paul Hernandez | phernandez, Paul Hernandez, bm-claudeai, Drew Cain... |
-| src/basic_memory/db.py | Source Code | 7428 | phernandez | phernandez, Paul Hernandez, Drew Cain, bm-claudeai... |
-| src/basic_memory/deps.py | Source Code | 12144 | bm-claudeai | phernandez, Paul Hernandez, bm-claudeai |
-| src/basic_memory/file_utils.py | Source Code | 6700 | phernandez | phernandez, Paul Hernandez |
-| src/basic_memory/importers/__init__.py | Source Code | 795 | bm-claudeai | bm-claudeai |
-| src/basic_memory/importers/base.py | Source Code | 2531 | bm-claudeai | bm-claudeai |
-| src/basic_memory/importers/chatgpt_importer.py | Source Code | 7372 | bm-claudeai | bm-claudeai |
-| src/basic_memory/importers/claude_conversations_importer.py | Source Code | 5725 | bm-claudeai | bm-claudeai |
-| src/basic_memory/importers/claude_projects_importer.py | Source Code | 5389 | bm-claudeai | bm-claudeai |
-| src/basic_memory/importers/memory_json_importer.py | Source Code | 3986 | bm-claudeai | bm-claudeai, phernandez |
-| src/basic_memory/importers/utils.py | Source Code | 1792 | bm-claudeai | bm-claudeai |
-| src/basic_memory/markdown/__init__.py | Source Code | 501 | phernandez | phernandez |
-| src/basic_memory/markdown/entity_parser.py | Source Code | 4516 | phernandez | phernandez, Paul Hernandez, github-actions[bot] |
-| src/basic_memory/markdown/markdown_processor.py | Source Code | 4968 | phernandez | phernandez, Paul Hernandez |
-| src/basic_memory/markdown/plugins.py | Source Code | 6639 | phernandez | phernandez, Paul Hernandez |
-| src/basic_memory/markdown/schemas.py | Source Code | 1896 | phernandez | phernandez, Paul Hernandez |
-| src/basic_memory/markdown/utils.py | Source Code | 3410 | Paul Hernandez | Paul Hernandez, phernandez |
-| src/basic_memory/mcp/__init__.py | Source Code | 35 | Paul Hernandez | Paul Hernandez |
-| src/basic_memory/mcp/async_client.py | Source Code | 925 | Paul Hernandez | phernandez, Paul Hernandez |
-| src/basic_memory/mcp/project_session.py | Source Code | 4203 | Paul Hernandez | Paul Hernandez, phernandez |
-| src/basic_memory/mcp/prompts/__init__.py | Source Code | 615 | Paul Hernandez | Paul Hernandez |
-| src/basic_memory/mcp/prompts/ai_assistant_guide.py | Source Code | 821 | Paul Hernandez | Paul Hernandez, phernandez |
-| src/basic_memory/mcp/prompts/continue_conversation.py | Source Code | 1998 | Paul Hernandez | Paul Hernandez, github-actions[bot], bm-claudeai |
-| src/basic_memory/mcp/prompts/recent_activity.py | Source Code | 3311 | Paul Hernandez | Paul Hernandez, phernandez, bm-claudeai |
-| src/basic_memory/mcp/prompts/search.py | Source Code | 1692 | Paul Hernandez | Paul Hernandez, bm-claudeai |
-| src/basic_memory/mcp/prompts/utils.py | Source Code | 5431 | Paul Hernandez | Paul Hernandez, bm-claudeai |
-| src/basic_memory/mcp/resources/ai_assistant_guide.md | Other | 14777 | phernandez | phernandez, Paul Hernandez |
-| src/basic_memory/mcp/resources/project_info.py | Source Code | 1906 | Paul Hernandez | Paul Hernandez, bm-claudeai |
-| src/basic_memory/mcp/server.py | Source Code | 1248 | Paul Hernandez | bm-claudeai, phernandez, Paul Hernandez |
-| src/basic_memory/mcp/tools/__init__.py | Source Code | 1619 | Paul Hernandez | phernandez, Paul Hernandez, Drew Cain |
-| src/basic_memory/mcp/tools/auth.py | Source Code | 1231 | phernandez | phernandez |
-| src/basic_memory/mcp/tools/canvas.py | Source Code | 3738 | Paul Hernandez | Paul Hernandez, phernandez, bm-claudeai |
-| src/basic_memory/mcp/tools/delete_note.py | Source Code | 7346 | phernandez | phernandez, Paul Hernandez, bm-claudeai |
-| src/basic_memory/mcp/tools/edit_note.py | Source Code | 13570 | Paul Hernandez | Paul Hernandez, phernandez |
-| src/basic_memory/mcp/tools/list_directory.py | Source Code | 5236 | Paul Hernandez | Paul Hernandez |
-| src/basic_memory/mcp/tools/move_note.py | Source Code | 16708 | phernandez | Paul Hernandez, phernandez |
-| src/basic_memory/mcp/tools/project_management.py | Source Code | 12944 | Paul Hernandez | Paul Hernandez, phernandez, Drew Cain |
-| src/basic_memory/mcp/tools/read_content.py | Source Code | 8596 | Paul Hernandez | Paul Hernandez, bm-claudeai |
-| src/basic_memory/mcp/tools/read_note.py | Source Code | 7614 | Paul Hernandez | Paul Hernandez, bm-claudeai, phernandez, Amadeusz ... |
-| src/basic_memory/mcp/tools/recent_activity.py | Source Code | 4833 | phernandez | Paul Hernandez, phernandez, bm-claudeai |
-| src/basic_memory/mcp/tools/search.py | Source Code | 15883 | phernandez | phernandez, github-actions[bot], Paul Hernandez, D... |
-| src/basic_memory/mcp/tools/sync_status.py | Source Code | 10517 | phernandez | phernandez |
-| src/basic_memory/mcp/tools/utils.py | Source Code | 21426 | Paul Hernandez | Paul Hernandez, phernandez, bm-claudeai |
-| src/basic_memory/mcp/tools/view_note.py | Source Code | 2499 | phernandez | phernandez |
-| src/basic_memory/mcp/tools/write_note.py | Source Code | 6178 | Paul Hernandez | Paul Hernandez, phernandez, bm-claudeai |
-| src/basic_memory/models/__init__.py | Source Code | 333 | phernandez | phernandez, Paul Hernandez, bm-claudeai |
-| src/basic_memory/models/base.py | Source Code | 225 | phernandez | phernandez, Paul Hernandez |
-| src/basic_memory/models/knowledge.py | Source Code | 7087 | phernandez | phernandez, Paul Hernandez, bm-claudeai |
-| src/basic_memory/models/project.py | Source Code | 2773 | bm-claudeai | bm-claudeai, phernandez |
-| src/basic_memory/models/search.py | Source Code | 1300 | phernandez | phernandez, Paul Hernandez, bm-claudeai |
-| src/basic_memory/repository/__init__.py | Source Code | 327 | Paul Hernandez | phernandez, bm-claudeai, Paul Hernandez |
-| src/basic_memory/repository/entity_repository.py | Source Code | 10405 | Drew Cain | phernandez, Paul Hernandez, Drew Cain, bm-claudeai... |
-| src/basic_memory/repository/observation_repository.py | Source Code | 2943 | phernandez | phernandez, bm-claudeai |
-| src/basic_memory/repository/project_info_repository.py | Source Code | 338 | Paul Hernandez | Paul Hernandez, bm-claudeai |
-| src/basic_memory/repository/project_repository.py | Source Code | 3159 | bm-claudeai | bm-claudeai |
-| src/basic_memory/repository/relation_repository.py | Source Code | 3179 | phernandez | phernandez, bm-claudeai |
-| src/basic_memory/repository/repository.py | Source Code | 15224 | phernandez | phernandez, bm-claudeai, Paul Hernandez |
-| src/basic_memory/repository/search_repository.py | Source Code | 21936 | phernandez | phernandez, Paul Hernandez, github-actions[bot], b... |
-| src/basic_memory/schemas/__init__.py | Source Code | 1674 | phernandez | phernandez, Paul Hernandez, bm-claudeai |
-| src/basic_memory/schemas/base.py | Source Code | 6738 | phernandez | phernandez, Paul Hernandez |
-| src/basic_memory/schemas/delete.py | Source Code | 1180 | phernandez | phernandez, Paul Hernandez |
-| src/basic_memory/schemas/directory.py | Source Code | 881 | bm-claudeai | bm-claudeai |
-| src/basic_memory/schemas/importer.py | Source Code | 663 | bm-claudeai | bm-claudeai |
-| src/basic_memory/schemas/memory.py | Source Code | 5833 | phernandez | phernandez, Paul Hernandez, Drew Cain, bm-claudeai... |
-| src/basic_memory/schemas/project_info.py | Source Code | 7047 | Paul Hernandez | Paul Hernandez, bm-claudeai, phernandez |
-| src/basic_memory/schemas/prompt.py | Source Code | 3648 | bm-claudeai | bm-claudeai |
-| src/basic_memory/schemas/request.py | Source Code | 3760 | Paul Hernandez | phernandez, Paul Hernandez |
-| src/basic_memory/schemas/response.py | Source Code | 6450 | phernandez | phernandez, Paul Hernandez |
-| src/basic_memory/schemas/search.py | Source Code | 3657 | phernandez | phernandez, Paul Hernandez, github-actions[bot], b... |
-| src/basic_memory/services/__init__.py | Source Code | 259 | phernandez | phernandez, Paul Hernandez, bm-claudeai |
-| src/basic_memory/services/context_service.py | Source Code | 14462 | bm-claudeai | phernandez, bm-claudeai, Paul Hernandez |
-| src/basic_memory/services/directory_service.py | Source Code | 6017 | bm-claudeai | bm-claudeai, Paul Hernandez |
-| src/basic_memory/services/entity_service.py | Source Code | 30440 | Paul Hernandez | phernandez, Paul Hernandez, bm-claudeai, Drew Cain... |
-| src/basic_memory/services/exceptions.py | Source Code | 390 | phernandez | phernandez, Paul Hernandez, bm-claudeai |
-| src/basic_memory/services/file_service.py | Source Code | 10059 | Paul Hernandez | phernandez, Paul Hernandez, bm-claudeai |
-| src/basic_memory/services/initialization.py | Source Code | 6715 | bm-claudeai | Paul Hernandez, bm-claudeai, Drew Cain, phernandez... |
-| src/basic_memory/services/link_resolver.py | Source Code | 4594 | phernandez | phernandez, Paul Hernandez, bm-claudeai, github-ac... |
-| src/basic_memory/services/project_service.py | Source Code | 28386 | bm-claudeai | bm-claudeai, Paul Hernandez, phernandez |
-| src/basic_memory/services/search_service.py | Source Code | 12782 | phernandez | phernandez, Paul Hernandez, bm-claudeai |
-| src/basic_memory/services/service.py | Source Code | 336 | phernandez | phernandez, Paul Hernandez |
-| src/basic_memory/services/sync_status_service.py | Source Code | 7504 | phernandez | phernandez, Paul Hernandez |
-| src/basic_memory/sync/__init__.py | Source Code | 156 | Paul Hernandez | Paul Hernandez, phernandez |
-| src/basic_memory/sync/background_sync.py | Source Code | 726 | bm-claudeai | bm-claudeai, phernandez |
-| src/basic_memory/sync/sync_service.py | Source Code | 23387 | Paul Hernandez | phernandez, Paul Hernandez, bm-claudeai, github-ac... |
-| src/basic_memory/sync/watch_service.py | Source Code | 15316 | Paul Hernandez | phernandez, bm-claudeai, Paul Hernandez |
-| src/basic_memory/templates/prompts/continue_conversation.hbs | Templates/Resources | 3076 | bm-claudeai | bm-claudeai, Drew Cain |
-| src/basic_memory/templates/prompts/search.hbs | Templates/Resources | 3098 | bm-claudeai | bm-claudeai |
-| src/basic_memory/utils.py | Source Code | 7657 | phernandez | phernandez, Paul Hernandez, andyxinweiminicloud, D... |
-| test-int/conftest.py | Source Code | 8203 | Paul Hernandez | Paul Hernandez, phernandez |
-| test-int/mcp/test_delete_note_integration.py | Source Code | 13175 | Paul Hernandez | Paul Hernandez, phernandez |
-| test-int/mcp/test_edit_note_integration.py | Source Code | 19822 | Paul Hernandez | Paul Hernandez, phernandez |
-| test-int/mcp/test_list_directory_integration.py | Source Code | 14744 | Paul Hernandez | Paul Hernandez, phernandez |
-| test-int/mcp/test_move_note_integration.py | Source Code | 19825 | Paul Hernandez | Paul Hernandez, phernandez |
-| test-int/mcp/test_project_management_integration.py | Source Code | 33175 | Paul Hernandez | Paul Hernandez, phernandez |
-| test-int/mcp/test_project_state_sync_integration.py | Source Code | 7728 | Paul Hernandez | Paul Hernandez, phernandez |
-| test-int/mcp/test_read_content_integration.py | Source Code | 11187 | Paul Hernandez | Paul Hernandez, phernandez |
-| test-int/mcp/test_read_note_integration.py | Source Code | 1381 | Paul Hernandez | Paul Hernandez, phernandez |
-| test-int/mcp/test_search_integration.py | Source Code | 14690 | Paul Hernandez | Paul Hernandez, phernandez |
-| test-int/mcp/test_write_note_integration.py | Source Code | 9472 | Paul Hernandez | Paul Hernandez, phernandez |
-| tests/Non-MarkdownFileSupport.pdf | Other | 106751 | Unknown |  |
-| tests/Screenshot.png | Other | 190076 | Unknown |  |
-| tests/__init__.py | Source Code | 141 | phernandez | phernandez, Paul Hernandez |
-| tests/api/conftest.py | Source Code | 1404 | phernandez | phernandez, bm-claudeai, Paul Hernandez |
-| tests/api/test_async_client.py | Source Code | 1382 | Paul Hernandez | Paul Hernandez, phernandez |
-| tests/api/test_continue_conversation_template.py | Source Code | 5152 | bm-claudeai | bm-claudeai |
-| tests/api/test_directory_router.py | Source Code | 9376 | Paul Hernandez | bm-claudeai, Paul Hernandez |
-| tests/api/test_importer_router.py | Source Code | 16578 | bm-claudeai | bm-claudeai, Paul Hernandez |
-| tests/api/test_knowledge_router.py | Source Code | 45771 | Paul Hernandez | phernandez, bm-claudeai, Paul Hernandez |
-| tests/api/test_management_router.py | Source Code | 6220 | bm-claudeai | bm-claudeai |
-| tests/api/test_memory_router.py | Source Code | 5555 | phernandez | phernandez, bm-claudeai |
-| tests/api/test_project_router.py | Source Code | 5201 | Paul Hernandez | bm-claudeai, Paul Hernandez, phernandez |
-| tests/api/test_project_router_operations.py | Source Code | 1812 | bm-claudeai | bm-claudeai, Paul Hernandez |
-| tests/api/test_prompt_router.py | Source Code | 5046 | bm-claudeai | bm-claudeai |
-| tests/api/test_resource_router.py | Source Code | 13960 | Paul Hernandez | phernandez, Paul Hernandez, bm-claudeai |
-| tests/api/test_search_router.py | Source Code | 6409 | phernandez | phernandez, bm-claudeai, Paul Hernandez, github-ac... |
-| tests/api/test_search_template.py | Source Code | 5258 | bm-claudeai | bm-claudeai |
-| tests/api/test_template_loader.py | Source Code | 8035 | bm-claudeai | bm-claudeai |
-| tests/api/test_template_loader_helpers.py | Source Code | 7445 | bm-claudeai | bm-claudeai |
-| tests/cli/conftest.py | Source Code | 1185 | Paul Hernandez | Paul Hernandez, phernandez |
-| tests/cli/test_cli_tools.py | Source Code | 13528 | Paul Hernandez | Paul Hernandez, phernandez, bm-claudeai |
-| tests/cli/test_import_chatgpt.py | Source Code | 6719 | Paul Hernandez | Paul Hernandez, bm-claudeai, phernandez |
-| tests/cli/test_import_claude_conversations.py | Source Code | 5028 | Paul Hernandez | Paul Hernandez, bm-claudeai, phernandez |
-| tests/cli/test_import_claude_projects.py | Source Code | 4585 | Paul Hernandez | Paul Hernandez, bm-claudeai, phernandez |
-| tests/cli/test_import_memory_json.py | Source Code | 3532 | Paul Hernandez | Paul Hernandez, phernandez, bm-claudeai |
-| tests/cli/test_project_commands.py | Source Code | 5143 | bm-claudeai | bm-claudeai, Paul Hernandez, phernandez |
-| tests/cli/test_project_info.py | Source Code | 3874 | phernandez | Paul Hernandez, phernandez |
-| tests/cli/test_status.py | Source Code | 4160 | Paul Hernandez | Paul Hernandez, phernandez, bm-claudeai |
-| tests/cli/test_sync.py | Source Code | 3864 | Paul Hernandez | Paul Hernandez, phernandez, bm-claudeai |
-| tests/cli/test_version.py | Source Code | 289 | Paul Hernandez | Paul Hernandez |
-| tests/conftest.py | Source Code | 15286 | phernandez | phernandez, Paul Hernandez, bm-claudeai |
-| tests/importers/test_importer_base.py | Source Code | 4329 | bm-claudeai | bm-claudeai |
-| tests/importers/test_importer_utils.py | Source Code | 1827 | bm-claudeai | bm-claudeai |
-| tests/markdown/__init__.py | Source Code | 0 | Unknown |  |
-| tests/markdown/test_entity_parser.py | Source Code | 8669 | phernandez | phernandez, Paul Hernandez, github-actions[bot] |
-| tests/markdown/test_markdown_plugins.py | Source Code | 5139 | Paul Hernandez | Paul Hernandez, phernandez |
-| tests/markdown/test_markdown_processor.py | Source Code | 5728 | phernandez | phernandez, Paul Hernandez |
-| tests/markdown/test_observation_edge_cases.py | Source Code | 4295 | phernandez | phernandez |
-| tests/markdown/test_parser_edge_cases.py | Source Code | 5142 | phernandez | phernandez |
-| tests/markdown/test_relation_edge_cases.py | Source Code | 3952 | phernandez | phernandez |
-| tests/markdown/test_task_detection.py | Source Code | 401 | Paul Hernandez | Paul Hernandez |
-| tests/mcp/conftest.py | Source Code | 1761 | phernandez | phernandez, Paul Hernandez, bm-claudeai |
-| tests/mcp/test_prompts.py | Source Code | 5989 | Paul Hernandez | Paul Hernandez, bm-claudeai, phernandez |
-| tests/mcp/test_resource_project_info.py | Source Code | 4885 | Paul Hernandez | Paul Hernandez, bm-claudeai, phernandez |
-| tests/mcp/test_resources.py | Source Code | 549 | Paul Hernandez | Paul Hernandez, phernandez |
-| tests/mcp/test_tool_canvas.py | Source Code | 7997 | Paul Hernandez | Paul Hernandez, phernandez |
-| tests/mcp/test_tool_delete_note.py | Source Code | 4208 | phernandez | phernandez |
-| tests/mcp/test_tool_edit_note.py | Source Code | 13503 | Paul Hernandez | Paul Hernandez, phernandez, Drew Cain |
-| tests/mcp/test_tool_list_directory.py | Source Code | 7730 | Paul Hernandez | Paul Hernandez, phernandez |
-| tests/mcp/test_tool_move_note.py | Source Code | 16346 | Paul Hernandez | Paul Hernandez, phernandez |
-| tests/mcp/test_tool_read_note.py | Source Code | 9741 | Paul Hernandez | Paul Hernandez, phernandez, github-actions[bot], A... |
-| tests/mcp/test_tool_recent_activity.py | Source Code | 3983 | phernandez | phernandez, bm-claudeai |
-| tests/mcp/test_tool_resource.py | Source Code | 6782 | Paul Hernandez | Paul Hernandez, phernandez, github-actions[bot] |
-| tests/mcp/test_tool_search.py | Source Code | 10959 | phernandez | Paul Hernandez, phernandez, github-actions[bot], D... |
-| tests/mcp/test_tool_sync_status.py | Source Code | 6331 | phernandez | phernandez |
-| tests/mcp/test_tool_utils.py | Source Code | 9228 | Paul Hernandez | Paul Hernandez, phernandez, bm-claudeai |
-| tests/mcp/test_tool_view_note.py | Source Code | 10004 | phernandez | phernandez |
-| tests/mcp/test_tool_write_note.py | Source Code | 19537 | Paul Hernandez | phernandez, Paul Hernandez, Drew Cain |
-| tests/repository/test_entity_repository.py | Source Code | 15498 | phernandez | phernandez, bm-claudeai, Paul Hernandez |
-| tests/repository/test_entity_repository_upsert.py | Source Code | 16983 | Drew Cain | Drew Cain, phernandez |
-| tests/repository/test_observation_repository.py | Source Code | 11786 | phernandez | phernandez, bm-claudeai |
-| tests/repository/test_project_info_repository.py | Source Code | 1186 | bm-claudeai | bm-claudeai |
-| tests/repository/test_project_repository.py | Source Code | 9455 | bm-claudeai | bm-claudeai |
-| tests/repository/test_relation_repository.py | Source Code | 11980 | phernandez | phernandez, bm-claudeai |
-| tests/repository/test_repository.py | Source Code | 5996 | phernandez | phernandez, Paul Hernandez |
-| tests/repository/test_search_repository.py | Source Code | 25471 | bm-claudeai | bm-claudeai, phernandez, Paul Hernandez |
-| tests/schemas/test_memory_url.py | Source Code | 2000 | phernandez | phernandez, Paul Hernandez |
-| tests/schemas/test_memory_url_validation.py | Source Code | 9338 | phernandez | phernandez |
-| tests/schemas/test_schemas.py | Source Code | 16880 | phernandez | phernandez, Paul Hernandez, bm-claudeai, Drew Cain... |
-| tests/schemas/test_search.py | Source Code | 3264 | phernandez | phernandez, Paul Hernandez, github-actions[bot] |
-| tests/services/test_context_service.py | Source Code | 8833 | phernandez | phernandez, bm-claudeai, Paul Hernandez |
-| tests/services/test_directory_service.py | Source Code | 6854 | Paul Hernandez | bm-claudeai, Paul Hernandez |
-| tests/services/test_entity_service.py | Source Code | 59278 | Paul Hernandez | phernandez, Paul Hernandez, bm-claudeai, Drew Cain... |
-| tests/services/test_file_service.py | Source Code | 5243 | phernandez | phernandez |
-| tests/services/test_initialization.py | Source Code | 6939 | bm-claudeai | Paul Hernandez, bm-claudeai, phernandez |
-| tests/services/test_link_resolver.py | Source Code | 13618 | phernandez | phernandez, Paul Hernandez, bm-claudeai |
-| tests/services/test_project_service.py | Source Code | 23576 | phernandez | bm-claudeai, Paul Hernandez, phernandez |
-| tests/services/test_project_service_operations.py | Source Code | 4679 | bm-claudeai | bm-claudeai, Paul Hernandez |
-| tests/services/test_search_service.py | Source Code | 25299 | Paul Hernandez | phernandez, Paul Hernandez, github-actions[bot] |
-| tests/services/test_sync_status_service.py | Source Code | 9926 | phernandez | phernandez, Paul Hernandez |
-| tests/sync/test_sync_service.py | Source Code | 39659 | phernandez | phernandez, Paul Hernandez, bm-claudeai |
-| tests/sync/test_sync_wikilink_issue.py | Source Code | 1959 | github-actions[bot] | github-actions[bot], Paul Hernandez |
-| tests/sync/test_tmp_files.py | Source Code | 5930 | Paul Hernandez | Paul Hernandez, bm-claudeai, phernandez |
-| tests/sync/test_watch_service.py | Source Code | 14076 | Paul Hernandez | Paul Hernandez, phernandez, bm-claudeai |
-| tests/sync/test_watch_service_edge_cases.py | Source Code | 2169 | Paul Hernandez | Paul Hernandez, bm-claudeai |
-| tests/test_config.py | Source Code | 3680 | Drew Cain | Drew Cain |
-| tests/test_db_migration_deduplication.py | Source Code | 6166 | Paul Hernandez | Paul Hernandez, Drew Cain, phernandez |
-| tests/utils/test_file_utils.py | Source Code | 6199 | phernandez | phernandez, Paul Hernandez |
-| tests/utils/test_parse_tags.py | Source Code | 1691 | github-actions[bot] | github-actions[bot], Paul Hernandez |
-| tests/utils/test_permalink_formatting.py | Source Code | 4193 | phernandez | phernandez, Paul Hernandez |
-| tests/utils/test_utf8_handling.py | Source Code | 5791 | phernandez | phernandez, Paul Hernandez |

memory.json

@@ -1,378 +0,0 @@
-{"type":"entity","name":"Paul","entityType":"person","observations":["Software developer combining DIY ethics, Free Software principles, and theoretical computer science","Created the Basic Machines project","Values authentic exchange of ideas","Approaches AI interaction with emphasis on genuine technical discussion","Comfortable with uncertainty and open dialogue","Balances practical implementation with broader implications"]}
-{"type":"entity","name":"Basic_Machines","entityType":"project","observations":["Local-first knowledge management system","Combines filesystem durability with graph-based knowledge representation","Focuses on enhancing human agency and understanding","Synthesizes DIY ethics, Free Software philosophy, and theoretical computer science","Current focus includes basic-memory system"]}
-{"type":"entity","name":"basic-memory","entityType":"software_system","observations":["A core component of Basic Machines","Local-first knowledge management system","Combines filesystem persistence with graph-based knowledge representation","Being implemented collaboratively by Paul and Claude"]}
-{"type":"entity","name":"basic-memory_implementation_patterns","entityType":"technical_patterns","observations":["Filesystem is source of truth - all changes write to files first","Clean separation of concerns between models (SQLAlchemy), schemas (Pydantic), and services","Repository pattern for database access","Service layer handling business logic and coordination","Atomic file operations using temporary files for safety","Clear error handling hierarchy with specific error types","Comprehensive test coverage with pytest and fixtures","Async/await used throughout the codebase","Validation using Pydantic models with custom validators"]}
-{"type":"entity","name":"fileio_module","entityType":"code_module","observations":["Extracted from EntityService to handle all file operations","Provides read_entity_file, write_entity_file, and delete_entity_file functions","Handles markdown parsing and formatting","Implements atomic file operations","Provides consistent error handling","Enables reuse across services"]}
-{"type":"entity","name":"entity_service","entityType":"code_module","observations":["Manages entities in both filesystem and database","Uses fileio module for file operations","Maintains database index of entities","Handles entity creation, retrieval, and deletion","Follows 'filesystem is source of truth' principle","Coordinates with observation service for full entity management"]}
-{"type":"entity","name":"observation_service","entityType":"code_module","observations":["Manages observations within entity files","Provides database indexing for efficient observation queries","Works with complete Entity objects rather than IDs","Handles observation addition and search","Maintains consistency between files and database","Under development for update/remove operations"]}
-{"type":"entity","name":"observation_management","entityType":"design_challenge","observations":["Key challenge: maintaining observation state across files and database","Exploring bulk update approach - treating all observations as a unit","Considering tracked observations with markdown comments for IDs","Investigating diff-based approach for observation-level changes","Evaluating position-based management without explicit IDs","Trade-offs between implementation complexity and markdown readability"]}
-{"type":"entity","name":"testing_infrastructure","entityType":"technical_patterns","observations":["Uses pytest with async support via pytest-asyncio","In-memory SQLite database for test isolation","Temporary directories for file operation testing","Comprehensive fixture system for test setup","Tests organized by component (entity, observation, etc)","Covers happy path, error cases, and edge cases","Uses monkeypatch for mocking dependencies","Clear separation between arrange, act, assert sections","Uses in-memory SQLite database for test isolation","Comprehensive fixture system for test data setup","Proper async test handling with pytest-asyncio"]}
-{"type":"entity","name":"test_categories","entityType":"test_suite","observations":["Happy path tests verify core functionality","Error path tests ensure proper error handling","Edge cases test special characters and long content","File operation tests verify atomic writes and rollbacks","Database sync tests verify index consistency","Recovery tests for rebuild operations","Punted on concurrent operation tests due to session management complexity"]}
-{"type":"entity","name":"completed_work","entityType":"project_milestone","observations":["Extracted file operations to fileio.py module","Updated EntityService to use fileio functions","Implemented initial ObservationService","Created comprehensive test suite","Established clear project patterns and principles","Set up basic database schema with SQLAlchemy","Created Pydantic models for validation"]}
-{"type":"entity","name":"future_work","entityType":"project_tasks","observations":["Implement observation updates/removals","Design proper session management for concurrent operations","Update EntityService tests for new fileio module","Add more sophisticated search functionality","Handle markdown formatting edge cases","Consider versioning for file changes","Implement proper backup strategy"]}
-{"type":"entity","name":"design_decisions","entityType":"technical_decisions","observations":["Filesystem as source of truth over database","Markdown format for human readability and editing","Atomic file operations for safety","SQLite + SQLAlchemy for proven reliability","Pydantic for validation and ID generation","Async/await for better scalability","Clear separation between files and database roles","Explicit error hierarchies for better handling"]}
-{"type":"entity","name":"concurrency_considerations","entityType":"technical_challenge","observations":["SQLAlchemy session management in async context","File operation atomicity","Transaction isolation levels","Potential for conflicting updates","Need for proper session lifecycle","Possibility of file system race conditions","Database lock management"]}
-{"type":"entity","name":"observation_update_approaches","entityType":"design_alternatives","observations":["Each approach trades off between simplicity, efficiency, and robustness","Four main approaches considered: bulk update, tracked IDs, diff-based, and position-based","Discussion revealed importance of human readability in file format","Consideration of manual editing workflows key to design","File system as source of truth principle guides tradeoffs"]}
-{"type":"entity","name":"bulk_update_approach","entityType":"design_option","observations":["Update all observations at once in a single operation","Simpler file operations - just rewrite the whole list","No need for observation matching or IDs","Very consistent with source of truth principle","Less efficient for small changes","May have concurrency implications","Simplest implementation option"]}
-{"type":"entity","name":"tracked_observations_approach","entityType":"design_option","observations":["Use markdown comments to store observation IDs","Enables precise updates and deletes","IDs stored as HTML comments in markdown","More complex markdown parsing required","IDs visible in raw markdown files","Balances tracking with readability"]}
-{"type":"entity","name":"diff_based_approach","entityType":"design_option","observations":["Implement observation-aware diffing","Track changes at observation level","More efficient for updates","Preserves manual edits and changes","More complex implementation needed","Must handle merge conflicts","Most sophisticated option considered"]}
-{"type":"entity","name":"position_based_approach","entityType":"design_option","observations":["Track observations by position/order","No explicit IDs needed","Cleanest markdown format","Order changes could break references","Difficult to handle concurrent edits","Most fragile option considered"]}
-{"type":"entity","name":"tasks_and_progress","entityType":"project_tracking","observations":["Current focus on observation management implementation","Completed core file operations extraction","Completed EntityService updates","Completed initial ObservationService","Basic test coverage in place","Future work includes concurrent operations","Future work includes search improvements","Need to handle markdown edge cases"]}
-{"type":"entity","name":"error_handling_patterns","entityType":"technical_patterns","observations":["Custom exception hierarchy with ServiceError base","Specific error types (FileOperationError, DatabaseSyncError, etc)","Clear separation between file and database errors","Error propagation patterns established","Focus on actionable error messages","Error handling at appropriate levels"]}
-{"type":"entity","name":"data_models","entityType":"technical_implementation","observations":["SQLAlchemy models for database structure","Pydantic schemas for API/service layer","Entity model with UUID-based IDs","Observation model with entity relationships","UTCDateTime custom type for timestamps","Automatic ID generation in Pydantic models","Strict validation rules"]}
-{"type":"entity","name":"markdown_format","entityType":"file_format","observations":["Simple, human-readable format","Entity name as H1 header","Metadata in key-value format","Observations as bullet points","Atomic file operations for updates","Designed for manual editing","No hidden metadata in main content"]}
-{"type":"entity","name":"test_driven_development","entityType":"development_pattern","observations":["Tests revealed need for atomic file operations","Error cases drove error hierarchy design","Edge cases informed validation rules","Test fixtures shaped service interfaces","File operations extracted due to test patterns","Concurrent test issues revealed session management needs"]}
-{"type":"entity","name":"architecture_evolution","entityType":"design_process","observations":["Started with simple EntityService implementation","Circular dependency between Entity and Observation services revealed design flaw","Extracted file operations to separate module","Moved to passing Entity objects rather than IDs","Improved separation of concerns through iterations","File operations became reusable across services","Database became true 'index' rather than source of truth"]}
-{"type":"entity","name":"validation_patterns","entityType":"technical_patterns","observations":["Pydantic models provide schema validation","Automatic ID generation if not provided","Database constraints via SQLAlchemy","Runtime checks in services","Markdown format validation","Error handling for invalid states"]}
-{"type":"entity","name":"markdown_examples","entityType":"documentation","observations":["Example of basic entity:\n# Entity Name\ntype: entity_type\n\n## Observations\n- First observation\n- Second observation","Example with special characters:\n# Test & Entity!\ntype: test\n\n## Observations\n- Test & observation with @#$% special chars!","Format ensures human readability:\n# Basic Machines\ntype: project\n\n## Observations\n- Local-first knowledge management system\n- Combines filesystem durability with graph-based knowledge representation","Future consideration for observation IDs:\n# Entity Name\ntype: entity_type\n\n## Observations\n- <!-- obs-id: abc123 -->\n  This is an observation with ID"]}
-{"type":"entity","name":"markdown_parsing_rules","entityType":"technical_implementation","observations":["H1 header contains entity name","Metadata uses key: value format","Observations section marked by H2 header","Each observation is a markdown list item","Blank lines separate sections","Special characters allowed in content","No restrictions on observation content"]}
-{"type":"entity","name":"schema_definitions","entityType":"technical_documentation","observations":["SQLAlchemy Entity model:\nclass Entity(Base):\n    id: str (primary key)\n    name: str (unique)\n    entity_type: str\n    created_at: datetime\n    updated_at: datetime","SQLAlchemy Observation model:\nclass Observation(Base):\n    id: str (primary key)\n    entity_id: str (foreign key)\n    content: str\n    created_at: datetime\n    context: Optional[str]","Pydantic Entity schema:\nclass Entity(BaseModel):\n    id: str\n    name: str\n    entity_type: str\n    observations: List[Observation]"]}
-{"type":"entity","name":"test_evolution","entityType":"development_history","observations":["Started with basic Entity CRUD tests","Added filesystem verification to all tests","Developed concurrent operation tests (later removed)","Edge case tests drove better error handling","Test fixtures evolved to support both file and DB testing","Mocking patterns for file/DB operations","Special cases for long content and special characters"]}
-{"type":"entity","name":"implementation_challenges","entityType":"technical_issues","observations":["Initial circular dependency between services","SQLAlchemy session management in async context","Atomic file operations with proper error handling","Maintaining DB sync with filesystem changes","Handling long content in observations","Managing test isolation with file operations","Deciding on markdown format tradeoffs","Concurrent operation complexity"]}
-{"type":"entity","name":"Basic_Factory","entityType":"Project","observations":["Collaborative project between Paul and Claude","Explores AI-human collaboration in software development","Uses MCP tools for file and memory management","Built with git integration capabilities","Focuses on maintaining project context across sessions","About 90% complete with MCP tools","Still needs improvements in collaboration via files/git/github","Will be used to document and share collaborative development process"]}
-{"type":"entity","name":"Basic_Factory_Components","entityType":"Technical","observations":["Server-side rendering with JinjaX","HTMX for dynamic updates","Alpine.js for client-side state","Tailwind CSS for styling","Component translation from React/shadcn/ui","Focus on simplicity and understandability","Demonstrates meta-compiler principles in component translation"]}
-{"type":"entity","name":"Component_Translation_Process","entityType":"Methodology","observations":["Treats component porting as meta-compilation","Maps between React/TypeScript and JinjaX/Alpine.js domains","Uses formal grammar transformation approaches","Maintains functionality while simplifying implementation","Focuses on server-side rendering patterns","Preserves accessibility and performance","Uses short, focused git branches for each component"]}
-{"type":"entity","name":"Basic_Machines_Philosophy","entityType":"Philosophy","observations":["Combines DIY punk ethics with software development","Emphasizes user empowerment and understanding","Values simplicity and composability","Treats complex systems as combinations of simple parts","Focuses on authentic creation and sharing","Draws inspiration from punk rock, Free Software, and theoretical CS","Emphasizes the cycle of creation, complexity, and renewal"]}
-{"type":"entity","name":"Basic_Machines_Manifesto","entityType":"Document","observations":["Created through collaboration between Paul and Claude","Explores connection between DIY punk ethics and software development","Emphasizes composition over inheritance in both philosophy and practice","Views software development through lens of basic machines that combine for complex computation","Advocates for user empowerment and technological independence","Structured in sections covering Origins, Philosophy, Technical Implementation, and AI Collaboration","Draws connections between punk rock, free software, and theoretical computer science","Emphasizes importance of sharing knowledge and building community","Released in December 2024"]}
-{"type":"entity","name":"AI_Human_Collaboration_Model","entityType":"Methodology","observations":["Focuses on deep collaboration rather than simple task completion","Maintains rich context across sessions via knowledge graph","Uses short, focused git branches for each collaborative session","Values intellectual partnership over simple code generation","Emphasizes both practical implementation and theoretical exploration","Creates space for authentic exchange while maintaining AI/human clarity","Uses formal methods when appropriate (like grammar transformation)","Documents decisions and processes for future reference","Developed through Basic Machines project experience"]}
-{"type":"entity","name":"Basic_Machines_Roadmap","entityType":"Project_Plan","observations":["Phase 1 (30 days): Build basic-machines.co website","Phase 2 (60-90 days): Develop premium component bundles","Phase 3 (90-120 days): Launch Basic Foundation commercial offering","Focus on building brand and marketing presence","Prioritize components needed for own site development","Document and share collaboration process","Build sustainable business model aligned with values"]}
-{"type":"entity","name":"Basic_Machines_Website","entityType":"Project","observations":["To be built at basic-machines.co","Will showcase products and vision","Needs components for navigation, hero sections, features","Will demonstrate component usage in production","Will include blog for sharing progress","Focus on clear value proposition","Platform for sharing Basic Machines philosophy"]}
-{"type":"entity","name":"Basic_Memory_Markdown_Example","entityType":"Example","observations":["Shows complete markdown structure for basic-memory entity","Uses frontmatter for metadata (id, type, created, context)","Has main description section after title","Includes Observations as bullet points","Shows Relations with [id] relation_type | context format","Lists References at bottom","Created during initial design discussion","Serves as canonical example of file format"]}
-{"type":"entity","name":"Basic_Memory_Database_Schema","entityType":"Technical","observations":["Uses SQLite for local storage","Entities table with id, name, type, created_at, context, description, references","Observations table linking to entities with content and context","Relations table tracking directional relationships between entities","References column needs quotes as SQL reserved word","Designed for easy rebuilding from markdown files","Foreign key constraints maintain data integrity","Unique constraint on relations prevents duplicates","Created_at timestamps track history","Context fields enable tracking information sources"]}
-{"type":"entity","name":"Basic_Memory_Project_Structure","entityType":"Technical","observations":["Uses dbmate for database migrations","Projects directory stores SQLite databases and markdown files","Makefile provides common development commands","Environment vars configure database connection","db/migrations directory for SQL schema changes","Gitignore excludes database files and env config","Uses Python 3.12 with modern tooling","Tests directory for pytest files","Follows Basic Machines project conventions"]}
-{"type":"entity","name":"Basic_Memory_Project_Isolation_Decision","entityType":"Decision","observations":["Decided to defer multi-project support to post-MVP","Will use separate SQLite databases per project","Initially using projects directory in code repository","Plan to make location configurable later","No changes needed to core domain model","Keeps initial implementation simple","FTS/search capabilities also deferred for simplicity"]}
-{"type":"entity","name":"Basic_Memory_Implementation_Plan","entityType":"Plan","observations":["Start with SQLAlchemy models matching schema","Then build CLI for basic operations","Then implement markdown parser","Use TDD approach throughout","Begin with core domain model","CLI will support CRUD operations","Parser must handle frontmatter and sections","Following modular development approach","Planning to use typer for CLI","Will use modern Python tools and practices"]}
-{"type":"entity","name":"Basic_Memory_Implementation_Status","entityType":"Status","observations":["Core modules implemented: models, services, repository, fileio","Modular architecture with clear separation of concerns","File operations extracted to separate fileio module","Initial ObservationService implementation complete","Basic test coverage in place","Exploring observation management strategies","Using SQLAlchemy for database interaction","Markdown file operations working","Entity management functional","Repository layer implementation complete with SQLAlchemy models and tests","Database operations working with proper UTC timestamp handling","In-memory SQLite testing infrastructure proven effective"]}
-{"type":"entity","name":"Basic_Memory_Observation_Management_Design","entityType":"Design","observations":["Four approaches under consideration","Bulk Update: Simple but less efficient","Tracked Observations: Precise but clutters markdown","Diff-based: Efficient but complex","Position-based: Clean but fragile","Key challenge is balancing markdown readability with efficient updates","Must maintain filesystem as source of truth","Need to consider concurrent edits","Currently evaluating trade-offs","Implementation choice pending discussion"]}
-{"type":"entity","name":"Basic_Memory_Architectural_Decisions","entityType":"Decisions","observations":["Split file operations into separate fileio module","Using SQLAlchemy for database operations","Maintain filesystem as source of truth","Modular service-based architecture","Clear separation between data access and business logic","Repository pattern for database interactions","Schemas separate from models","Focus on maintainability and testability","Services handle business rules","Considering concurrency in design"]}
-{"type":"entity","name":"Basic_Memory_Implementation_Analysis","entityType":"Analysis","observations":["Clean modular architecture with clear responsibilities","Strong typing throughout codebase","Excellent error handling with custom exceptions","SQLAlchemy models perfectly match our domain model","Atomic file operations for data safety","Services implement filesystem-as-source-of-truth principle","Async support throughout","Good separation between domain models and database models","Careful handling of UTC timestamps","Smart use of SQLAlchemy relationships"]}
-{"type":"entity","name":"Basic_Memory_Current_Challenges","entityType":"Challenges","observations":["Observation update/removal strategy needs to be chosen","Need to handle concurrent file operations safely","Search functionality to be implemented","Edge cases in markdown formatting to be handled","Session management for concurrent operations needed","Balance between file operations and database sync","Testing coverage could be expanded","Need to handle relationship updates in files"]}
-{"type":"entity","name":"Basic_Memory_Observation_Hash_Tracking","entityType":"Design","observations":["Use content hashes to track observation identity","Store hashes in database but not in markdown","Can match observations across file edits using hashes","Similar to how git tracks content changes","Keeps markdown clean and human-friendly","Allows efficient bulk updates","Handles reordering of observations","Maintains filesystem as source of truth","No need for visible IDs in markdown","Could track observation history through hash changes"]}
-{"type":"entity","name":"Basic_Memory_Repository_Implementation","entityType":"Code_Implementation","observations":["Implemented base Repository class with CRUD operations","Added specialized EntityRepository, ObservationRepository, and RelationRepository","Used string IDs instead of UUIDs","Added UTCDateTime custom type for timestamp handling","Used in-memory SQLite for testing","Achieved 84% test coverage","Created comprehensive pytest fixtures"]}
-{"type":"entity","name":"Basic_Memory_Dependencies","entityType":"Technical","observations":["Uses Python 3.12","SQLAlchemy with async support","pytest-asyncio for async testing","aiosqlite for async SQLite operations","greenlet for SQLAlchemy async support","uv for dependency management","pytest-cov for coverage reporting","Development dependencies managed in pyproject.toml"]}
-{"type":"entity","name":"Basic_Memory_Current_Architecture","entityType":"Architecture_Analysis","observations":["Clear separation between domain models (Pydantic) and storage models (SQLAlchemy)","File I/O completely separated into dedicated module","Strong 'filesystem as source of truth' pattern in services","Atomic file operations with proper error handling","Service layer coordinates between filesystem and database","Database acts as queryable index rather than primary storage","Clean error hierarchy with specific exception types","Rebuild operations available for recovery scenarios"]}
-{"type":"entity","name":"Basic_Memory_Evolution","entityType":"Analysis","observations":["Started with repository pattern following basic-foundation","Evolved to more sophisticated architecture with clear layers","Added Pydantic schemas for domain modeling","Separated file operations into dedicated module","Implemented robust error handling throughout","Maintained filesystem as source of truth principle","Added observation management with context tracking","Introduced rebuild capabilities for system recovery"]}
-{"type":"entity","name":"Basic_Memory_Service_Layer","entityType":"Implementation","observations":["EntityService handles entity lifecycle and coordinates storage","ObservationService manages observations within entities","Services ensure filesystem and database stay in sync","Clear error handling with ServiceError hierarchy","Strong typing throughout service interfaces","Implements filesystem as source of truth pattern","Handles UUID generation and timestamp management","Provides methods for system recovery and rebuild"]}
-{"type":"entity","name":"Basic_Memory_Schema_Design","entityType":"Implementation","observations":["Uses Pydantic for domain models and validation","Automatic ID generation with timestamp and UUID","Clear separation from SQLAlchemy storage models","Supports optional context tracking","Models match markdown file structure","Enables clean serialization/deserialization","Strong typing with proper validation rules","Independent from storage concerns"]}
-{"type":"entity","name":"Basic_Memory_Next_Tasks","entityType":"TaskList","observations":["✅ Implement SQLAlchemy models and repositories (Done)","✅ Add SQLAlchemy migrations (Done)","✅ Create service layer (Done)","✅ Implement file I/O module (Done)","✅ Set up domain models with Pydantic (Done)","✅ Initial test infrastructure (Done)","✅ Basic CRUD operations (Done)","⏳ Implement full test coverage for db.py","⏳ Add more sophisticated search functionality","⏳ Implement CLI interface","⏳ Add relationship management to services","⏳ Handle concurrent file operations safely","⏳ Add versioning for file changes","⏳ Implement proper backup strategy","⏳ Add type hints throughout codebase","⏳ Improve error messages and logging","⏳ Add documentation for core modules"]}
-{"type":"entity","name":"Basic_Memory_Meta_Experience","entityType":"Case_Study","observations":["Experienced our own context loss when reconstructing project knowledge","Had to rebuild task list and project context from filesystem and memory","Validated 'filesystem as source of truth' principle through reconstruction","Code and tests served as reliable historical record","Knowledge graph structure helped guide reconstruction process","Markdown files provided human-readable context","Atomic information design made piece-by-piece reconstruction possible","Ironic validation of the need for basic-memory's features","Experience demonstrates value of durable, human-readable knowledge storage","Shows importance of separating durable storage from ephemeral context"]}
-{"type":"entity","name":"Model_Context_Protocol","entityType":"protocol","observations":["Core part of the basic-memory architecture","Enables AI-human collaboration on projects","Provides tool-based interaction with knowledge graph","Developed by Anthropic for structured AI-system interaction","Used for maintaining consistent, rich context across conversations"]}
-{"type":"entity","name":"basic-memory_core_principles","entityType":"principles","observations":["Local First: All data stored locally in SQLite","Project Isolation: Separate databases per project","Human Readable: Everything exportable to plain text","AI Friendly: Structure optimized for LLM interaction","DIY Ethics: User owns and controls their data","Simple Core: Start simple, expand based on needs","Tool Integration: MCP-based interaction model"]}
-{"type":"entity","name":"basic-memory_business_model","entityType":"business_strategy","observations":["Core features free: Local SQLite, basic knowledge graph, search, markdown export, basic MCP tools","Professional features potential: Rich document export, advanced versioning, collaboration features, custom integrations, priority support","Focus on maintaining DIY/punk philosophy while enabling sustainability"]}
-{"type":"entity","name":"basic-memory_cli","entityType":"interface","observations":["Supports project management commands (create, switch, list)","Entity management (add entity, add observation, add relation)","Future support for export and batch operations","Follows consistent command structure","Planned integration with MCP tools"]}
-{"type":"entity","name":"basic-memory_export_format","entityType":"file_format","observations":["Uses markdown with frontmatter metadata","Includes entity name, type, creation timestamp","Observations as bullet points","Relations in structured format with links","References section at bottom","Designed for human readability and machine parsing","Example format documented in project specs"]}
-{"type":"entity","name":"relation_service","entityType":"code_module","observations":["Planned service for managing relations in both filesystem and database","Will follow filesystem-is-source-of-truth principle like other services","Needs to handle atomic file operations for relation updates","Must coordinate with EntityService for relationship integrity","Will handle bidirectional relationship tracking","Will support relation validation and type enforcement","Must implement rebuild functionality for index recovery","Will need careful error handling for file/db sync","Should support relation search and filtering","Must handle relation lifecycle (create/read/update/delete)"]}
-{"type":"entity","name":"service_layer_patterns","entityType":"implementation_patterns","observations":["Services handle both file and database operations","Filesystem is always source of truth","Database serves as queryable index","Services implement atomic file operations","Clear error hierarchy with specific exceptions","Use of dependency injection via constructor params","Async/await used throughout service layer","Services coordinate between storage layers","Repository pattern used for database access","Services maintain entity integrity across storage","Rich error types extend from ServiceError base","Rebuild operations available for recovery"]}
-{"type":"entity","name":"database_models","entityType":"implementation","observations":["Entity model with unique name and type","Observation model linked to entities","Relation model tracks connections between entities","Custom UTCDateTime type for timestamp handling","Use of SQLAlchemy relationships for navigation","Cascading deletes for dependent objects","String IDs used for compatibility","Rich relationship modeling with backpopulates","Proper indexing on foreign keys","Context tracking available on models","Models include created_at timestamps","Relationships handle bidirectional navigation"]}
-{"type":"entity","name":"repository_patterns","entityType":"implementation_patterns","observations":["Generic Repository[T] base class implementation","Type-safe operations with SQLAlchemy","Specialized repositories for each model type","Async operations throughout","Clear error handling patterns","Support for custom queries and filtering","Pagination support built-in","Transaction management via session","Proper type hints and generics usage","Entity-specific query methods in subclasses"]}
-{"type":"entity","name":"relation_service_design","entityType":"design","observations":["Must handle relation lifecycle in both files and DB","Needs to validate existence of both entities","Should support relation type enforcement","Must maintain bidirectional consistency","Should support relation querying and filtering","Needs proper error handling for graph consistency","Must integrate with entity file format","Should support bulk operations for efficiency","Must handle relation deletion and cascading","Should provide search by type and entities"]}
-{"type":"entity","name":"relation_service_implementation_plan","entityType":"plan","observations":["1. Define core relation operations (create, get, delete)","2. Implement file format handling for relations","3. Add database sync with RelationRepository","4. Implement validation and error handling","5. Add rebuild and recovery operations","6. Implement relation type enforcement","7. Add relation search and filtering","8. Implement bulk operations","9. Add comprehensive tests","10. Document API and error handling"]}
-{"type":"entity","name":"relation_service_challenges","entityType":"challenges","observations":["Maintaining consistency between file and database","Handling relation type validation efficiently","Managing bidirectional relationships in files","Ensuring atomic updates across entities","Handling deletion with proper cascading","Efficient querying of relation graphs","Recovery from partial file/db sync failures","Bulk operation atomicity","Clear error reporting for graph operations","Performance with large relation sets"]}
-{"type":"entity","name":"relation_file_format","entityType":"file_format","observations":["Relations stored in entity markdown files","Format: [target_id] relation_type | context","Relations section marked by ## Relations header","Outgoing relations only stored in source entity","Relations rebuild on entity load","Clean human-readable format","Context is optional with pipe separator","Links generate valid navigation references","Markdown-friendly formatting","Example: [Paul] authored | with Claude"]}
-{"type":"entity","name":"relation_service_error_handling","entityType":"implementation_patterns","observations":["RelationError extends ServiceError base","Specific errors for validation failures","Handles entity not found cases","Manages relation type validation errors","File operation errors properly wrapped","Database sync errors clearly reported","Transaction rollback on errors","Proper error propagation chain","Clear error messages for debugging","Recovery paths for common errors"]}
-{"type":"entity","name":"relation_service_testing","entityType":"testing","observations":["Test all relation lifecycle operations","Verify file and database consistency","Test relation type validation","Check error handling paths","Test bulk operations","Verify bidirectional consistency","Test recovery operations","Check cascade operations","Verify search and filtering","Test with large relation sets"]}
-{"type":"entity","name":"fileio_patterns","entityType":"implementation_patterns","observations":["Atomic file operations with temporary files","Clear error handling for IO operations","Consistent file naming and paths","Support for different file formats","Efficient file reading and writing","Proper file locking mechanisms","Recovery from partial writes","Consistent encoding handling","Directory management utilities","Path manipulation helpers","Currently implemented in fileio.py module","Uses pathlib for path operations","Handles file not found cases gracefully","Maintains data integrity during writes"]}
-{"type":"entity","name":"pytest_patterns","entityType":"implementation_patterns","observations":["Common fixtures should be in conftest.py for reuse","Use pytest_asyncio.fixture for async fixtures","Session fixtures need proper async cleanup","Temporary directories should be managed with context managers","Test categories: happy path, error path, recovery, edge cases","Services need project_path and repo injected","Use monkeypatch for mocking in async context","SQLite in-memory database ideal for testing","Explicit test verification: file content and database state"]}
-{"type":"entity","name":"relation_implementation_learnings","entityType":"implementation_learnings","observations":["Better to pass full Entity objects than IDs to services","Services should not re-read entities if they have them","File operations should be atomic and verified","Database serves as queryable index, not source of truth","Relations stored in source entity's markdown file","Clear separation between file ops and database sync","Entity objects should own their relations list","Context is optional but fully supported in implementation"]}
-{"type":"entity","name":"test_driven_insights","entityType":"learnings","observations":["Tests help reveal better API design (e.g., passing Entity objects)","Error cases drive proper exception hierarchy","File verification as important as database checks","Edge cases inform markdown format decisions","Recovery tests ensure system resilience","Tests document expected behavior clearly","Fixtures significantly reduce test complexity","Common patterns emerge through test writing"]}
-{"type":"entity","name":"meta_development_insights","entityType":"process","observations":["Break down large tasks into reviewable chunks","One file at a time prevents response truncation","Iterative development with tests leads to better design","Infrastructure code (fixtures) should be consolidated early","Test categories help ensure comprehensive coverage","Knowledge capture should happen during development","APIs tend to evolve toward simpler patterns","File operations require careful verification"]}
-{"type":"entity","name":"AI_Assistant_Learnings","entityType":"meta_insights","observations":["Output management: Breaking responses into single files prevents truncation and allows better review","Knowledge graph helps maintain context: I can reference previous decisions and patterns accurately","Memory rebuilding experience validated the need for durable storage","Test-driven development provides clear steps and verification","Explicit relation tracking in knowledge graph helps me understand project context","Rich context from multiple sources (code, docs, tests) enables better assistance","File-at-a-time approach allows deeper analysis of each component","Keeping entity names consistent helps with referencing and relationships"]}
-{"type":"entity","name":"Effective_Response_Patterns","entityType":"meta_patterns","observations":["When showing code changes, break into discrete files","Review existing code before suggesting changes","Reference knowledge graph for context and patterns","Explicitly connect new code to existing patterns","Validate suggestions against test cases","Keep track of file changes for atomic commits","Check both implementation and test files for consistency","Maintain clear separation of concerns in responses"]}
-{"type":"entity","name":"AI_Context_Management","entityType":"meta_practice","observations":["Knowledge graph provides reliable persistent memory","Project documentation gives high-level context","Code review shows implementation patterns","Tests demonstrate expected behavior","Important to actively track what has been modified","Entity relationships help understand dependencies","Regular knowledge capture during development","Using consistent entity references across conversations"]}
-{"type":"entity","name":"AI_Tool_Usage_Patterns","entityType":"meta_practice","observations":["read_file before suggesting changes","write_file one file at a time","list_directory to understand project structure","search_nodes to find relevant context","create_entities to capture new learnings","create_relations to connect concepts","Using knowledge graph to track decisions","Validating changes through test execution"]}
-{"type":"entity","name":"relation_service_learnings","entityType":"implementation_learnings","observations":["Entity-based API cleaner than ID-based for service layer","Model_dump method can handle storage serialization","File format needs explicit section markers (## Relations)","Whitespace handling important for long content comparisons","Test fixtures allow focused test cases","SQLAlchemy selects better than raw SQL for type safety","Atomic file operations maintained for relations"]}
-{"type":"entity","name":"test_driven_insights_relations","entityType":"learnings","observations":["Tests revealed need for whitespace normalization","Edge cases drove file format decisions","SQLAlchemy model access safer than raw queries","Fixtures reduced test setup complexity","File verification as important as database checks","Testing both memory model and storage format","Test categories ensure comprehensive coverage"]}
-{"type":"entity","name":"relation_service_patterns","entityType":"patterns","observations":["Use Entity objects in API","Serialize to IDs for storage","Maintain file as source of truth","Keep file format human-readable","Handle circular references in serialization","Use repository pattern for database","Clear error hierarchies"]}
-{"type":"entity","name":"packaging_learnings","entityType":"technical_learnings","observations":["When using pytest-mock, traditional pip install works more reliably than uv sync","Package discovery behavior can differ between uv and pip","Clean venv with pip install is a reliable fallback for dependency issues","Package installation location might differ between uv and pip","Dependencies in pyproject.toml dev section work reliably with pip install -e .[dev]"]}
-{"type":"entity","name":"Recent_Implementation_Progress","entityType":"progress_update","observations":["Successfully split services.py into modular structure under services/","Created __init__.py, entity_service.py, observation_service.py, relation_service.py","Fixed pytest-mock installation issues by using pip install -e .[dev] instead of uv sync","Improved test structure with minimal mocking - only used for error testing","Implemented relation service with Entity-based API","Achieved good test coverage across services","File operations are only mocked when testing error conditions","Services follow filesystem-as-source-of-truth pattern"]}
-{"type":"entity","name":"Next_Steps","entityType":"project_tasks","observations":["Consider adding more relation service tests","Potentially expand relations features","Look for opportunities to improve test coverage","Consider documenting package management preferences (pip vs uv)","Consider adding integration tests for services","Review and possibly expand error handling cases"]}
-{"type":"entity","name":"Development_Practices","entityType":"process","observations":["Favor real operations over mocks in tests","Only mock for error condition testing","Use pip install -e .[dev] for reliable dev dependency installation","Maintain modular service structure","Keep filesystem as source of truth","Use Entity objects in service APIs instead of IDs","Validate both file and database state in tests"]}
-{"type":"entity","name":"MCP_Resources","entityType":"Concept","observations":["Stateful objects in Model Context Protocol","Enable persistent access to capabilities"]}
-{"type":"entity","name":"MCP_Server_Implementation","entityType":"Technical_Design","observations":["Inherits from mcp.server.Server base class","Tools are implemented as async methods","Each tool method maps directly to a function available to the AI","Tools can request user input via Prompts","Simple function call interface rather than explicit resource management","State management handled by server instance","Returns serialized data using model_dump() for consistency"]}
-{"type":"entity","name":"MCP_Tools","entityType":"Protocol_Feature","observations":["Defined as async methods on server class","Return values must match tool definition schema","Can maintain state between invocations via server instance","Tools can prompt for user input when needed","No need for explicit Resource objects in implementation"]}
-{"type":"entity","name":"Basic_Memory_MCP","entityType":"Implementation","observations":["Uses MemoryService for core operations","Implements project selection via prompts","Maintains project context across tool invocations","Maps directly to memory graph operations","Handles serialization of Pydantic models"]}
-{"type":"entity","name":"Basic_Memory_Testing","entityType":"Testing_Design","observations":["Needs pytest for async testing","Should isolate filesystem operations for tests","Needs to handle MCP server lifecycle in tests","Should test both service layer and MCP interface","Will need mocks for project paths and file operations"]}
-{"type":"entity","name":"Memory_Service_Tests","entityType":"Test_Suite","observations":["Should test entity creation with observations","Should test relation creation between entities","Should verify proper ID generation and model validation","Should test deletion cascading","Should test search functionality","Must verify proper serialization of entities and relations"]}
-{"type":"entity","name":"MCP_Server_Tests","entityType":"Test_Suite","observations":["Should test project initialization workflow","Should test prompt handling","Should verify tool input/output formats","Should test error cases and validation","Must verify proper serialization in tool responses"]}
-{"type":"entity","name":"Memory_Service_Refactoring","entityType":"Technical_Task","observations":["MemoryService uses create() but EntityService might expect create_entity()","MemoryService assumes get_by_name() but EntityService might use different method","Need to verify deletion method signatures","Need to check if search interface matches","Should verify observation handling matches ObservationService interface","RelationService methods need verification","EntityService.create_entity takes name, type, and optional observations directly, not an Entity object","EntityService requires project_path and entity_repo in constructor","ObservationService.add_observation takes Entity object and content string, not raw data","RelationService.create_relation takes Entity objects directly, not dict data","All services follow filesystem-as-source-of-truth pattern with DB indexing","All services handle database synchronization internally","Services expect Path objects for filesystem operations"]}
-{"type":"entity","name":"Service_Interface_Audit","entityType":"Technical_Task","observations":["Need to review all existing service interfaces","Document current method signatures","Map discrepancies between MemoryService assumptions and actual interfaces","Check return types and error handling patterns","Review transaction/atomicity requirements","Method signatures need alignment: create vs create_entity etc","Need to handle DB repositories in service constructors","File operations should use project_path consistently","Need to maintain filesystem-as-source-of-truth pattern","Should handle database synchronization at service level","Error handling should align with existing patterns","Consider making MemoryService handle DB indexing consistently"]}
-{"type":"entity","name":"Memory_Service_Patterns","entityType":"Technical_Pattern","observations":["Uses inner async functions to encapsulate operation logic","Leverages list comprehensions with async functions for parallel operations","Each operation follows a consistent pattern: validate, update DB, write file","Inner functions make the code more readable and maintainable","Operations can run in parallel when using list comprehensions with async functions"]}
-{"type":"entity","name":"Pydantic_Create_Pattern","entityType":"Technical_Pattern","observations":["Separate Create models match the exact shape of incoming data","Provides clear contract for MCP tool inputs","Handles validation of raw input data","Converts cleanly to domain models via from_create methods","Maintains separation between external API format and internal models","Similar to FastAPI request model pattern","Allows camelCase in API while using snake_case internally"]}
-{"type":"entity","name":"Basic_Memory_Business","entityType":"Business_Model","observations":["Core system is open source and free","Local-first, giving users data control","Professional features could be licensed","Enterprise support and customization services","Potential for MCP tool marketplace"]}
-{"type":"entity","name":"MCP_Marketplace","entityType":"Business_Concept","observations":["Could host verified MCP tools for different use cases","Tools rated by performance and reliability","Marketplace takes percentage of tool usage fees","Enterprise tool verification and security scanning","Custom tool development services","Integration support for existing tools"]}
-{"type":"entity","name":"Persistence_Of_Vision","entityType":"Concept","observations":["Mental model for continuous AI-human interaction","Like cinema: 24fps creates illusion of smooth motion","Basic-memory provides 'frames' of structured knowledge","Current state: Better than flipbook, not yet digital cinema","Goal: Achieve smoother cognitive continuity between interactions","Proposed by Drew as metaphor for AI conversation continuity"]}
-{"type":"entity","name":"Conversation_Continuity_Pattern","entityType":"Usage_Pattern","observations":["Use basic-memory entity/relation schema for conversations","Each chat becomes an entity with observations for key points","Relations link to discussed concepts and other chats","Uses zettelkasten format IDs for natural ordering","Can be used as template/recipe for others","Future possibility: Git SHA integration for versioning"]}
-{"type":"entity","name":"Usage_Recipes","entityType":"Feature_Concept","observations":["Predefined patterns users can follow or adapt","Could include conversation tracking recipe","Templates for different knowledge management styles","Shows practical applications of the generic schema","Helps users get started with the system"]}
-{"type":"entity","name":"Chat_References","entityType":"Technical_Feature","observations":["Uses ref:* syntax to reference previous conversations","Combines reference semantics with pointer symbolism","Format: ref:*{zettelkasten-id}","Allows explicit context loading between chats","Inspired by C++ references and pointers","Provides memory-model-like access to conversation context","Uses ref:// URI format following MCP Resource pattern","Could support multiple reference schemes (chat/entity/concept)","Makes reference semantics explicit and unambiguous","Aligns with standard URI formatting"]}
-{"type":"entity","name":"Chat_Reference_Protocol","entityType":"Technical_Specification","observations":["Uses URI format: ref://basic-memory/chat/[id]","Follows MCP Resource pattern: [protocol]://[host]/[path]","Enables explicit context loading between chats","Can support multiple resource types (chat/entity/concept)","Provides standardized way to reference previous conversations","Example: ref://basic-memory/chat/20240307-drew-ab12ef34"]}
-{"type":"entity","name":"20240307-chat-reference-protocol","entityType":"conversation","observations":["Developed ref:// URI format for chat references","Added Chat Reference Protocol to prompt instructions","Discussed implementation of chat continuation","Created complete prompt instructions document","Reference format follows MCP Resource pattern","Reviewed and confirmed complete prompt instructions","Ready to test ref://basic-memory/chat/20240307-chat-reference-protocol in new chat"]}
-{"type":"entity","name":"20240307-chat-reference-protocol-test","entityType":"conversation","observations":["First implementation test of chat reference protocol","Testing continuation from 20240307-chat-reference-protocol","Focused on practical implementation of ref:// URI format"]}
-{"type":"entity","name":"Write_File_Tool_Usage","entityType":"Tool_Usage_Pattern","observations":["Never use placeholders like '# Rest of...' when writing files - must include complete file content","File content must be complete and valid - partial updates will truncate the file","If showing partial changes, should inform human and let them handle the file write","write_file tool replaces entire file contents - cannot do partial updates","Code files especially must be complete and valid to avoid breaking functionality","Always read_file before write_file to understand current state","Using write_file without reading first risks reverting recent changes","Pattern should be: read current state, make modifications, then write if needed","Especially important in collaborative development where files may have been updated"]}
-{"type":"entity","name":"Run_Tests_Tool_Request","entityType":"Feature_Request","observations":["Need to add a tool enabling Claude to run tests locally","Would help with direct validation of code changes","Current workaround: Claude has to ask human to run tests","Should support running specific test functions (e.g. pytest tests/test_memory_service.py::test_create_relations)","Would improve iterative development workflow between human and AI"]}
-{"type":"entity","name":"SQLAlchemy_Async_Loading_Pattern","entityType":"Technical_Pattern","observations":["Use selectinload() instead of lazy loading when accessing SQLAlchemy relationships in async code","Lazy loading doesn't work with async due to greenlet context requirements","selectinload performs a single efficient query with an IN clause","Pattern used in basic-memory's EntityRepository for loading relations","Documented in find_by_id method with thorough explanation","Alternative approaches: joinedload (single JOIN query) or subqueryload (subquery approach)","Benefits: prevents 'MissingGreenlet' errors, reduces N+1 query problems","Key insight: load all needed relationships upfront in async code","Example use: selectinload(Entity.outgoing_relations)"]}
-{"type":"entity","name":"20241207-sqlalchemy-async-pattern","entityType":"conversation","observations":["Fixed SQLAlchemy async relationship loading issues","Implemented selectinload pattern in EntityRepository","Updated find_by_id to eager load relations","Added documentation about the pattern","Created knowledge graph entry about SQLAlchemy async loading","Fixed failing tests by properly loading relations in memory_service","Discussed SQLAlchemy relationship loading best practices"]}
-{"type":"entity","name":"20241207-memory-service-relations","entityType":"conversation","observations":["Fixed SQLAlchemy async loading with selectinload pattern","Updated find_by_id in EntityRepository to eager load relations","Discovered create_relations works but returns empty list","Verified relations are being stored correctly in memory.json","Next step: Work on MemoryService.add_observations implementation","Improved understanding of MCP memory storage format through debugging"]}
-{"type":"entity","name":"add_observations_implementation_plan","entityType":"technical_plan","observations":["Follow pattern from create_entity and create_relation methods","File operations first (read & write) - filesystem is source of truth","Database updates in parallel","Simplify current implementation","Current flow is:"," - First read entities and create observations"," - Write files in parallel"," - Update DB indexes sequentially","Key tests needed:"," - Adding observations to multiple entities"," - Verifying filesystem state first"," - Verifying database state"," - Error cases for missing entities"," - Error cases for file operations"]}
-{"type":"entity","name":"MCP_Reference_Integration","entityType":"feature_idea","observations":["Can be implemented as a Model Context Protocol integration similar to the fetch tool","Would provide structured way to pass chat references to Claude","Could handle ref:// URL format systematically","Integration would fetch context from referenced chats and inject into conversation","Observed from Claude Desktop UI showing MCP integration pattern with fetch tool","Would be more robust than passing references in chat text"]}
-{"type":"entity","name":"Project_Priorities","entityType":"roadmap","observations":["P1: Dogfooding basic-memory system instead of JSON memory store","Future: Implement MCP-based reference system"]}
-{"type":"entity","name":"great_observation_loading_saga_20241207","entityType":"debugging_session","observations":["Occurred on December 7, 2024 while debugging basic-memory SQLAlchemy relationship loading","Issue: selectinload() wasn't properly loading relationships in async SQLAlchemy context","Tried multiple solutions: explicit joins, manual loading, various SQLAlchemy loading strategies","Final solution: Using session.refresh() with explicit relationship names","Memorable quote: 'The Great Observation Loading Saga'","Key learning: Sometimes the obvious SQLAlchemy patterns need adaptation for async contexts","Solution preserved in basic-memory repository in EntityRepository.find_by_id()"]}
-{"type":"entity","name":"basic_memory_implementation_20241208","entityType":"technical_milestone","observations":["Fixed async SQLAlchemy relationship loading issues by using explicit refresh with relationship names","Established pattern of relationship handling belonging in MemoryService not EntityService","Fixed ID generation flow through Pydantic schemas to DB layer","Standardized error handling using EntityNotFoundError","All 32 tests passing with 70% coverage","Core services (Entity, Observation, Relation) working properly","Ready for MCP server implementation","Notable debugging session: The Great Observation Loading Saga - resolved lazy loading issues","Established clear separation between MemoryService orchestration and individual service responsibilities"]}
-{"type":"entity","name":"MCP_Dependency_Risk","entityType":"technical_lesson","observations":["Experienced disruption when MCP npm package disappeared - 'leftpad moment'","Need to ensure basic-memory tools are resilient to external dependency issues","Local implementation of MCP server provides better stability than npm packages","Important to maintain control of critical infrastructure components","Validates DIY/local-first philosophy of basic-memory project","Package manager fragility revealed by simple 'npx @modelcontextprotocol/server-memory' failure"]}
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-{"type":"relation","from":"Memory_Service_Refactoring","to":"Basic_Memory_MCP","relationType":"affects"}
-{"type":"relation","from":"Memory_Service_Patterns","to":"Basic_Memory_MCP","relationType":"improves"}
-{"type":"relation","from":"Pydantic_Create_Pattern","to":"Memory_Service_Patterns","relationType":"enables"}
-{"type":"relation","from":"Pydantic_Create_Pattern","to":"Basic_Memory_MCP","relationType":"improves"}
-{"type":"relation","from":"MCP_Marketplace","to":"Basic_Memory_Business","relationType":"enables"}
-{"type":"relation","from":"Basic_Memory","to":"MCP_Marketplace","relationType":"could_integrate_with"}
-{"type":"relation","from":"Persistence_Of_Vision","to":"Basic_Memory","relationType":"helps_achieve"}
-{"type":"relation","from":"Drew","to":"Persistence_Of_Vision","relationType":"conceptualized"}
-{"type":"relation","to":"Usage_Recipes","from":"Conversation_Continuity_Pattern","relationType":"is_example_of"}
-{"type":"relation","to":"Basic_Memory","from":"Usage_Recipes","relationType":"enhances"}
-{"type":"relation","to":"Basic_Memory","from":"Chat_References","relationType":"enhances"}
-{"type":"relation","to":"Conversation_Continuity_Pattern","from":"Chat_References","relationType":"implements"}
-{"type":"relation","from":"20240307-chat-reference-protocol-test","to":"20240307-chat-reference-protocol","relationType":"continues_from"}
-{"type":"relation","from_id":"Run_Tests_Tool_Request","to_id":"Basic_Machines","relationType":"enhances","context":"development workflow improvement"}
-{"type":"relation","from_id":"SQLAlchemy_Async_Loading_Pattern","to_id":"basic-memory","relation_type":"improves","context":"database performance and async compatibility"}
-{"type":"relation","from_id":"SQLAlchemy_Async_Loading_Pattern","to_id":"Entity","relation_type":"applies_to","context":"relationship loading strategy"}
-{"type":"relation","from":"MCP_Reference_Integration","to":"Project_Priorities","relationType":"prioritized_after"}
-{"type":"relation","from":"great_observation_loading_saga_20241207","to":"Basic_Memory","relationType":"occurred_in"}
-{"type":"relation","from":"great_observation_loading_saga_20241207","to":"SQLAlchemy","relationType":"relates_to"}
-{"type":"relation","from":"basic_memory_implementation_20241208","to":"Basic_Memory","relationType":"improves"}
-{"type":"relation","from":"great_observation_loading_saga_20241207","to":"basic_memory_implementation_20241208","relationType":"leads_to"}
-{"type":"relation","from":"MCP_Dependency_Risk","to":"DIY_Ethics","relationType":"validates"}
-{"type":"relation","from":"MCP_Dependency_Risk","to":"basic-memory_core_principles","relationType":"reinforces"}
-{"type":"relation","from":"MCP_Dependency_Risk","to":"Basic_Memory_Implementation_Plan","relationType":"influences"}
-{"type":"relation","from":"basic_memory_mcp_architecture","to":"basic_memory_project_20241208","relationType":"implements"}
-{"type":"relation","from":"basic_memory_sync_considerations","to":"basic_memory_project_20241208","relationType":"influences"}
-{"type":"relation","from":"mcp_server_learnings","to":"basic_memory_mcp_architecture","relationType":"informs"}
-{"type":"relation","from":"20241208-mcp-tool-refactoring","to":"Basic_Memory_MCP","relationType":"improves"}
-{"type":"relation","from":"20241208-mcp-tool-refactoring","to":"Basic_Memory_Implementation_Plan","relationType":"implements"}

pyproject.toml

@@ -3,7 +3,7 @@ name = "basic-memory"
 dynamic = ["version"]
 description = "Local-first knowledge management combining Zettelkasten with knowledge graphs"
 readme = "README.md"
-requires-python = ">=3.12.1"
+requires-python = ">=3.12"
 license = { text = "AGPL-3.0-or-later" }
 authors = [
     { name = "Basic Machines", email = "hello@basic-machines.co" }
@@ -30,10 +30,12 @@ dependencies = [
     "alembic>=1.14.1",
     "pillow>=11.1.0",
     "pybars3>=0.9.7",
-    "fastmcp==2.10.2",
+    "fastmcp>=2.10.2",
     "pyjwt>=2.10.1",
     "python-dotenv>=1.1.0",
     "pytest-aio>=1.9.0",
+    "aiofiles>=24.1.0", # Async file I/O
+    "logfire>=0.73.0", # Optional observability (disabled by default via config)
 ]
 
 
@@ -53,16 +55,20 @@ build-backend = "hatchling.build"
 [tool.pytest.ini_options]
 pythonpath = ["src", "tests"]
 addopts = "--cov=basic_memory --cov-report term-missing"
-testpaths = ["tests"]
+testpaths = ["tests", "test-int"]
 asyncio_mode = "strict"
 asyncio_default_fixture_loop_scope = "function"
+markers = [
+    "benchmark: Performance benchmark tests (deselect with '-m \"not benchmark\"')",
+    "slow: Slow-running tests (deselect with '-m \"not slow\"')",
+]
 
 [tool.ruff]
 line-length = 100
 target-version = "py312"
 
-[tool.uv]
-dev-dependencies = [
+[dependency-groups]
+dev = [
     "gevent>=24.11.1",
     "icecream>=2.1.3",
     "pytest>=8.3.4",
@@ -71,6 +77,7 @@ dev-dependencies = [
     "pytest-asyncio>=0.24.0",
     "pytest-xdist>=3.0.0",
     "ruff>=0.1.6",
+    "freezegun>=1.5.5",
 ]
 
 [tool.hatch.version]

scripts/generate_legal_inventory.py

@@ -1,483 +0,0 @@
-#!/usr/bin/env python3
-"""
-Legal File Inventory Generator for Basic Memory
-
-Generates comprehensive file inventory with contributor information
-for legal documentation, copyright assignments, and due diligence.
-
-Usage:
-    python scripts/generate_legal_inventory.py [options]
-
-Output formats:
-    - CSV: Detailed spreadsheet for analysis
-    - JSON: Structured data for integration
-    - Markdown: Human-readable legal report
-"""
-
-import argparse
-import csv
-import hashlib
-import json
-import subprocess
-from collections import defaultdict
-from datetime import datetime
-from pathlib import Path
-from typing import Dict, List
-
-
-class LegalInventoryGenerator:
-    """Generate comprehensive file inventory for legal documentation."""
-    
-    # Files to exclude from legal inventory
-    EXCLUDED_PATTERNS = {
-        # Generated/compiled files
-        '*.pyc', '*.pyo', '*.pyd', '__pycache__',
-        '*.so', '*.dylib', '*.dll',
-        
-        # Build/cache directories
-        'build/', 'dist/', '.eggs/', '*.egg-info/',
-        '.coverage', '.pytest_cache/', '.mypy_cache/',
-        '.ruff_cache/', '.tox/', 'venv/', '.venv/', 'env/', '.env/',
-        'node_modules/', '.npm/', '.yarn/',
-        
-        # IDE and editor files
-        '.vscode/', '.idea/', '*.swp', '*.swo', '*~',
-        '.DS_Store', 'Thumbs.db',
-        
-        # Version control
-        '.git/', '.gitignore',
-        
-        # OS generated
-        'desktop.ini', '*.tmp', '*.temp'
-    }
-    
-    # File categories for legal classification
-    FILE_CATEGORIES = {
-        'source_code': ['.py', '.pyx', '.pyi'],
-        'documentation': ['.md', '.rst', '.txt'],
-        'configuration': ['.toml', '.yaml', '.yml', '.json', '.ini', '.cfg'],
-        'legal': ['LICENSE', 'COPYING', 'COPYRIGHT', '.md'],
-        'build_deployment': ['Dockerfile', 'Makefile', 'justfile', '.sh'],
-        'database': ['.sql', '.sqlite', '.db'],
-        'templates': ['.j2', '.jinja2', '.hbs', '.handlebars'],
-        'data': ['.csv', '.json', '.xml'],
-        'other': []  # Catch-all for uncategorized files
-    }
-    
-    def __init__(self, repo_path: str = "."):
-        """Initialize generator with repository path."""
-        self.repo_path = Path(repo_path).resolve()
-        self.file_inventory: List[Dict] = []
-        self.contributors: Dict[str, Dict] = defaultdict(lambda: {
-            'email': '', 'commits': 0, 'lines_added': 0, 'files': set()
-        })
-        
-    def should_exclude_file(self, file_path: Path) -> bool:
-        """Check if file should be excluded from inventory."""
-        # Check if file is tracked by git (more efficient than check-ignore)
-        try:
-            rel_path = str(file_path.relative_to(self.repo_path))
-            result = subprocess.run([
-                'git', 'ls-files', '--error-unmatch', rel_path
-            ], capture_output=True, cwd=self.repo_path)
-            
-            # If git ls-files returns non-zero, file is not tracked (likely ignored)
-            if result.returncode != 0:
-                return True
-                
-        except Exception:
-            # Fallback to manual exclusion patterns if git fails
-            pass
-        
-        # Additional manual exclusions for safety
-        file_str = str(file_path.relative_to(self.repo_path))
-        
-        for pattern in self.EXCLUDED_PATTERNS:
-            if pattern.endswith('/'):
-                if any(part == pattern[:-1] for part in file_path.parts):
-                    return True
-            elif '*' in pattern:
-                import fnmatch
-                if fnmatch.fnmatch(file_str, pattern):
-                    return True
-            else:
-                if file_path.name == pattern or file_str == pattern:
-                    return True
-        return False
-    
-    def categorize_file(self, file_path: Path) -> str:
-        """Categorize file based on extension and name."""
-        suffix = file_path.suffix.lower()
-        name = file_path.name.upper()
-        
-        # Check legal files by name first
-        if any(legal in name for legal in ['LICENSE', 'COPYING', 'COPYRIGHT', 'CLA']):
-            return 'legal'
-            
-        # Check by extension
-        for category, extensions in self.FILE_CATEGORIES.items():
-            if suffix in extensions:
-                return category
-                
-        return 'other'
-    
-    def get_file_hash(self, file_path: Path) -> str:
-        """Generate SHA-256 hash of file content."""
-        try:
-            with open(file_path, 'rb') as f:
-                return hashlib.sha256(f.read()).hexdigest()
-        except (IOError, OSError):
-            return "ERROR_READING_FILE"
-    
-    def get_git_contributors(self, file_path: Path) -> List[Dict]:
-        """Get contributor information for a specific file."""
-        try:
-            rel_path = file_path.relative_to(self.repo_path)
-            
-            # Get contributors with line counts
-            result = subprocess.run([
-                'git', 'log', '--follow', '--pretty=format:%an|%ae|%ad|%H',
-                '--date=short', '--', str(rel_path)
-            ], capture_output=True, text=True, cwd=self.repo_path)
-            
-            if result.returncode != 0:
-                return []
-                
-            contributors = []
-            seen = set()
-            
-            for line in result.stdout.strip().split('\n'):
-                if not line:
-                    continue
-                    
-                parts = line.split('|')
-                if len(parts) >= 4:
-                    name, email, date, commit_hash = parts[:4]
-                    
-                    # Normalize author names/emails
-                    normalized_name = self.normalize_author_name(name, email)
-                    
-                    if normalized_name not in seen:
-                        contributors.append({
-                            'name': normalized_name,
-                            'email': email,
-                            'first_contribution': date,
-                            'commit_hash': commit_hash
-                        })
-                        seen.add(normalized_name)
-                        
-            return contributors
-            
-        except Exception as e:
-            print(f"Warning: Could not get git info for {file_path}: {e}")
-            return []
-    
-    def normalize_author_name(self, name: str, email: str) -> str:
-        """Normalize author names to handle multiple emails for same person."""
-        # Known mappings for Basic Memory team
-        name_mappings = {
-            'phernandez': 'Paul Hernandez',
-            'Paul Hernandez': 'Paul Hernandez',
-            'drew-cain': 'Drew Cain',
-            'Drew Cain': 'Drew Cain'
-        }
-        
-        # Handle GitHub bot accounts
-        if 'bot' in name.lower() or 'claude' in name.lower():
-            return f"{name} (AI Assistant)"
-            
-        return name_mappings.get(name, name)
-    
-    def get_file_stats(self, file_path: Path) -> Dict:
-        """Get comprehensive file statistics."""
-        try:
-            stat = file_path.stat()
-            rel_path = file_path.relative_to(self.repo_path)
-            
-            # Basic file info
-            file_info = {
-                'path': str(rel_path),
-                'name': file_path.name,
-                'size_bytes': stat.st_size,
-                'modified_time': datetime.fromtimestamp(stat.st_mtime).isoformat(),
-                'category': self.categorize_file(file_path),
-                'sha256_hash': self.get_file_hash(file_path)
-            }
-            
-            # Git information
-            contributors = self.get_git_contributors(file_path)
-            file_info['contributors'] = contributors
-            file_info['primary_author'] = contributors[0]['name'] if contributors else 'Unknown'
-            file_info['contributor_count'] = len(contributors)
-            
-            # Update global contributor stats
-            for contrib in contributors:
-                name = contrib['name']
-                self.contributors[name]['email'] = contrib['email']
-                self.contributors[name]['files'].add(str(rel_path))
-                
-            return file_info
-            
-        except Exception as e:
-            print(f"Error processing {file_path}: {e}")
-            return None
-    
-    def scan_repository(self) -> None:
-        """Scan repository and build file inventory."""
-        print(f"Scanning repository: {self.repo_path}")
-        
-        # Get all git-tracked files first (much more efficient)
-        try:
-            result = subprocess.run([
-                'git', 'ls-files'
-            ], capture_output=True, text=True, cwd=self.repo_path)
-            
-            if result.returncode == 0:
-                tracked_files = [self.repo_path / f for f in result.stdout.strip().split('\n') if f]
-                print(f"Found {len(tracked_files)} git-tracked files")
-                
-                for file_path in tracked_files:
-                    if file_path.is_file():
-                        file_info = self.get_file_stats(file_path)
-                        if file_info:
-                            self.file_inventory.append(file_info)
-            else:
-                print("Warning: Could not get git tracked files, falling back to directory scan")
-                self._fallback_scan()
-                
-        except Exception as e:
-            print(f"Warning: Git command failed ({e}), falling back to directory scan")
-            self._fallback_scan()
-        
-        # Get global git stats
-        self._get_global_git_stats()
-        
-        print(f"Processed {len(self.file_inventory)} files")
-        print(f"Found {len(self.contributors)} contributors")
-    
-    def _fallback_scan(self) -> None:
-        """Fallback directory scan if git commands fail."""
-        for file_path in self.repo_path.rglob('*'):
-            if file_path.is_file() and not self.should_exclude_file(file_path):
-                file_info = self.get_file_stats(file_path)
-                if file_info:
-                    self.file_inventory.append(file_info)
-    
-    def _get_global_git_stats(self) -> None:
-        """Get global contributor statistics from git."""
-        try:
-            # Get commit counts per author
-            result = subprocess.run([
-                'git', 'shortlog', '-sn', '--all'
-            ], capture_output=True, text=True, cwd=self.repo_path)
-            
-            if result.returncode == 0:
-                for line in result.stdout.strip().split('\n'):
-                    if line.strip():
-                        parts = line.strip().split('\t', 1)
-                        if len(parts) == 2:
-                            count, name = parts
-                            normalized_name = self.normalize_author_name(name, '')
-                            self.contributors[normalized_name]['commits'] = int(count)
-                            
-        except Exception as e:
-            print(f"Warning: Could not get global git stats: {e}")
-    
-    def generate_summary(self) -> Dict:
-        """Generate inventory summary statistics."""
-        total_files = len(self.file_inventory)
-        total_size = sum(f['size_bytes'] for f in self.file_inventory)
-        
-        # Category breakdown
-        categories = defaultdict(int)
-        for file_info in self.file_inventory:
-            categories[file_info['category']] += 1
-        
-        # Top contributors
-        top_contributors = sorted(
-            self.contributors.items(),
-            key=lambda x: len(x[1]['files']),
-            reverse=True
-        )[:10]
-        
-        return {
-            'scan_date': datetime.now().isoformat(),
-            'repository_path': str(self.repo_path),
-            'total_files': total_files,
-            'total_size_bytes': total_size,
-            'categories': dict(categories),
-            'contributor_count': len(self.contributors),
-            'top_contributors': [
-                {
-                    'name': name,
-                    'file_count': len(stats['files']),
-                    'commit_count': stats['commits'],
-                    'email': stats['email']
-                }
-                for name, stats in top_contributors
-            ]
-        }
-    
-    def export_csv(self, output_path: str) -> None:
-        """Export inventory to CSV format."""
-        with open(output_path, 'w', newline='', encoding='utf-8') as csvfile:
-            fieldnames = [
-                'path', 'name', 'category', 'size_bytes', 'modified_time',
-                'primary_author', 'contributor_count', 'contributors_list',
-                'sha256_hash'
-            ]
-            
-            writer = csv.DictWriter(csvfile, fieldnames=fieldnames)
-            writer.writeheader()
-            
-            for file_info in sorted(self.file_inventory, key=lambda x: x['path']):
-                contributors_list = '; '.join([
-                    f"{c['name']} ({c['email']})" for c in file_info['contributors']
-                ])
-                
-                writer.writerow({
-                    'path': file_info['path'],
-                    'name': file_info['name'],
-                    'category': file_info['category'],
-                    'size_bytes': file_info['size_bytes'],
-                    'modified_time': file_info['modified_time'],
-                    'primary_author': file_info['primary_author'],
-                    'contributor_count': file_info['contributor_count'],
-                    'contributors_list': contributors_list,
-                    'sha256_hash': file_info['sha256_hash']
-                })
-        
-        print(f"CSV export saved to: {output_path}")
-    
-    def export_json(self, output_path: str) -> None:
-        """Export inventory to JSON format."""
-        # Convert sets to lists for JSON serialization
-        contributors_serializable = {}
-        for name, stats in self.contributors.items():
-            contributors_serializable[name] = {
-                'email': stats['email'],
-                'commits': stats['commits'],
-                'lines_added': stats['lines_added'],
-                'files': list(stats['files'])
-            }
-        
-        data = {
-            'summary': self.generate_summary(),
-            'files': self.file_inventory,
-            'contributors': contributors_serializable
-        }
-        
-        with open(output_path, 'w', encoding='utf-8') as jsonfile:
-            json.dump(data, jsonfile, indent=2, ensure_ascii=False)
-        
-        print(f"JSON export saved to: {output_path}")
-    
-    def export_markdown(self, output_path: str) -> None:
-        """Export inventory to Markdown format for legal documentation."""
-        summary = self.generate_summary()
-        
-        with open(output_path, 'w', encoding='utf-8') as mdfile:
-            mdfile.write("# Basic Memory - Legal File Inventory\n\n")
-            
-            # Summary section
-            mdfile.write("## Summary\n\n")
-            mdfile.write(f"**Scan Date:** {summary['scan_date']}\n")
-            mdfile.write(f"**Repository:** {summary['repository_path']}\n")
-            mdfile.write(f"**Total Files:** {summary['total_files']:,}\n")
-            mdfile.write(f"**Total Size:** {summary['total_size_bytes']:,} bytes\n")
-            mdfile.write(f"**Contributors:** {summary['contributor_count']}\n\n")
-            
-            # Category breakdown
-            mdfile.write("## File Categories\n\n")
-            for category, count in sorted(summary['categories'].items()):
-                mdfile.write(f"- **{category.replace('_', ' ').title()}:** {count} files\n")
-            mdfile.write("\n")
-            
-            # Top contributors
-            mdfile.write("## Contributors\n\n")
-            for contrib in summary['top_contributors']:
-                mdfile.write(f"- **{contrib['name']}** ({contrib['email']}): ")
-                mdfile.write(f"{contrib['file_count']} files, {contrib['commit_count']} commits\n")
-            mdfile.write("\n")
-            
-            # Detailed file listing by category
-            mdfile.write("## Detailed File Inventory\n\n")
-            
-            for category in sorted(summary['categories'].keys()):
-                category_files = [f for f in self.file_inventory if f['category'] == category]
-                if not category_files:
-                    continue
-                    
-                mdfile.write(f"### {category.replace('_', ' ').title()}\n\n")
-                
-                for file_info in sorted(category_files, key=lambda x: x['path']):
-                    mdfile.write(f"**{file_info['path']}**\n")
-                    mdfile.write(f"- Primary Author: {file_info['primary_author']}\n")
-                    mdfile.write(f"- Contributors: {file_info['contributor_count']}\n")
-                    mdfile.write(f"- Size: {file_info['size_bytes']:,} bytes\n")
-                    
-                    if file_info['contributors']:
-                        contributors_str = ', '.join([c['name'] for c in file_info['contributors']])
-                        mdfile.write(f"- All Contributors: {contributors_str}\n")
-                    
-                    mdfile.write(f"- SHA-256: `{file_info['sha256_hash']}`\n\n")
-        
-        print(f"Markdown export saved to: {output_path}")
-
-
-def main():
-    """Main entry point."""
-    parser = argparse.ArgumentParser(
-        description="Generate legal file inventory for Basic Memory repository"
-    )
-    parser.add_argument(
-        '--repo-path', '-r',
-        default='.',
-        help='Path to repository (default: current directory)'
-    )
-    parser.add_argument(
-        '--output-dir', '-o',
-        default='./legal_inventory',
-        help='Output directory for reports (default: ./legal_inventory)'
-    )
-    parser.add_argument(
-        '--formats', '-f',
-        nargs='+',
-        choices=['csv', 'json', 'markdown', 'all'],
-        default=['all'],
-        help='Output formats to generate (default: all)'
-    )
-    
-    args = parser.parse_args()
-    
-    # Create output directory
-    output_dir = Path(args.output_dir)
-    output_dir.mkdir(exist_ok=True)
-    
-    # Generate inventory
-    generator = LegalInventoryGenerator(args.repo_path)
-    generator.scan_repository()
-    
-    # Determine formats to export
-    formats = args.formats
-    if 'all' in formats:
-        formats = ['csv', 'json', 'markdown']
-    
-    # Export in requested formats
-    timestamp = datetime.now().strftime('%Y%m%d_%H%M%S')
-    
-    if 'csv' in formats:
-        generator.export_csv(output_dir / f'basic_memory_inventory_{timestamp}.csv')
-    
-    if 'json' in formats:
-        generator.export_json(output_dir / f'basic_memory_inventory_{timestamp}.json')
-    
-    if 'markdown' in formats:
-        generator.export_markdown(output_dir / f'basic_memory_inventory_{timestamp}.md')
-    
-    print("\nLegal inventory generation complete!")
-    print(f"Output saved to: {output_dir}")
-
-
-if __name__ == '__main__':
-    main()

specs/SPEC-1 Specification-Driven Development Process.md

@@ -0,0 +1,156 @@
+---
+title: 'SPEC-1: Specification-Driven Development Process'
+type: spec
+permalink: specs/spec-1-specification-driven-development-process
+tags:
+- process
+- specification
+- development
+- meta
+---
+
+# SPEC-1: Specification-Driven Development Process
+
+## Why
+We're implementing specification-driven development to solve the complexity and circular refactoring issues in our web development process. 
+Instead of getting lost in framework details and type gymnastics, we start with clear specifications that drive implementation.
+
+The default approach of adhoc development with AI agents tends to result in:
+- Circular refactoring cycles
+- Fighting framework complexity
+- Lost context between sessions
+- Unclear requirements and scope
+
+## What
+This spec defines our process for using basic-memory as the specification engine to build basic-memory-cloud. 
+We're creating a recursive development pattern where basic-memory manages the specs that drive the development of basic-memory-cloud.
+
+**Affected Areas:**
+- All future component development
+- Architecture decisions
+- Agent collaboration workflows
+- Knowledge management and context preservation
+
+## How (High Level)
+
+### Specification Structure
+
+Name: Spec names should be numbered sequentially, followed by a description eg. `SPEC-X - Simple Description.md`.
+See: [[Spec-2: Slash Commands Reference]]
+
+Every spec is a complete thought containing:
+- **Why**: The reasoning and problem being solved
+- **What**: What is affected or changed
+- **How**: High-level approach to implementation
+- **How to Evaluate**: Testing/validation procedure
+- Additional context as needed
+
+### Living Specification Format
+
+Specifications are **living documents** that evolve throughout implementation:
+
+**Progress Tracking:**
+- **Completed items**: Use ✅ checkmark emoji for implemented features
+- **Pending items**: Use `- [ ]` GitHub-style checkboxes for remaining tasks
+- **In-progress items**: Use `- [x]` when work is actively underway
+
+**Status Philosophy:**
+- **Avoid static status headers** like "COMPLETE" or "IN PROGRESS" that become stale
+- **Use checklists within content** to show granular implementation progress
+- **Keep specs informative** while providing clear progress visibility
+- **Update continuously** as understanding and implementation evolve
+
+**Example Format:**
+```markdown
+### ComponentName
+- ✅ Basic functionality implemented
+- ✅ Props and events defined
+- - [ ] Add sorting controls
+- - [ ] Improve accessibility
+- - [x] Currently implementing responsive design
+```
+
+This creates **git-friendly progress tracking** where `[ ]` easily becomes `[x]` or ✅ when completed, and specs remain valuable throughout the development lifecycle.
+
+
+## Claude Code 
+
+We will leverage Claude Code capabilities to make the process semi-automated. 
+
+- Slash commands: define repeatable steps in the process (create spec, implement, review, etc)
+- Agents: define roles to carry out instructions  (front end developer, baskend developer, etc)
+- MCP tools: enable agents to implement specs via actions (write code, test, etc)
+
+### Workflow
+1. **Create**: Write spec as complete thought in `/specs` folder
+2. **Discuss**: Iterate and refine through agent collaboration
+3. **Implement**: Hand spec to appropriate specialist agent
+4. **Validate**: Review implementation against spec criteria
+5. **Document**: Update spec with learnings and decisions
+
+### Slash Commands
+
+Claude slash commands are used to manage the flow.
+These are simple instructions to help make the process uniform. 
+They can be updated and refined as needed. 
+
+- `/spec create [name]` - Create new specification
+- `/spec status` - Show current spec states
+- `/spec implement [name]` - Hand to appropriate agent
+- `/spec review [name]` - Validate implementation
+
+### Agent Orchestration
+
+Agents are defined with clear roles, for instance:
+
+- **system-architect**: Creates high-level specs, ADRs, architectural decisions
+- **vue-developer**: Component specs, UI patterns, frontend architecture
+- **python-developer**: Implementation specs, technical details, backend logic
+- 
+- Each agent reads/updates specs through basic-memory tools. 
+
+## How to Evaluate
+
+### Success Criteria
+- Specs provide clear, actionable guidance for implementation
+- Reduced circular refactoring and scope creep
+- Persistent context across development sessions
+- Clean separation between "what/why" and implementation details
+- Specs record a history of what happened and why for historical context
+
+### Testing Procedure
+1. Create a spec for an existing problematic component
+2. Have an agent implement following only the spec
+3. Compare result quality and development speed vs. ad-hoc approach
+4. Measure context preservation across sessions
+5. Evaluate spec clarity and completeness
+
+### Metrics
+- Time from spec to working implementation
+- Number of refactoring cycles required
+- Agent understanding of requirements
+- Spec reusability for similar components
+
+## Notes
+- Start simple: specs are just complete thoughts, not heavy processes
+- Use basic-memory's knowledge graph to link specs, decisions, components
+- Let the process evolve naturally based on what works
+- Focus on solving the actual problem: Manage complexity in development
+
+## Observations
+
+- [problem] Web development without clear goals and documentation circular refactoring cycles #complexity
+- [solution] Specification-driven development reduces scope creep and context loss #process-improvement  
+- [pattern] basic-memory as specification engine creates recursive development loop #meta-development
+- [workflow] Five-step process: Create → Discuss → Implement → Validate → Document #methodology
+- [tool] Slash commands provide uniform process automation #automation
+- [agent-pattern] Three specialized agents handle different implementation domains #specialization
+- [success-metric] Time from spec to working implementation measures process efficiency #measurement
+- [learning] Process should evolve naturally based on what works in practice #adaptation
+- [format] Living specifications use checklists for progress tracking instead of static status headers #documentation
+- [evolution] Specs evolve throughout implementation maintaining value as working documents #continuous-improvement
+
+## Relations
+
+- spec [[Spec-2: Slash Commands Reference]]
+- spec [[Spec-3: Agent Definitions]]

specs/SPEC-10 Unified Deployment Workflow and Event Tracking.md

@@ -0,0 +1,569 @@
+---
+title: 'SPEC-10: Unified Deployment Workflow and Event Tracking'
+type: spec
+permalink: specs/spec-10-unified-deployment-workflow-event-tracking
+tags:
+- workflow
+- deployment
+- event-sourcing
+- architecture
+- simplification
+---
+
+# SPEC-10: Unified Deployment Workflow and Event Tracking
+
+## Why
+
+We replaced a complex multi-workflow system with DBOS orchestration that was proving to be more trouble than it was worth. The previous architecture had four separate workflows (`tenant_provisioning`, `tenant_update`, `tenant_deployment`, `tenant_undeploy`) with overlapping logic, complex state management, and fragmented event tracking. DBOS added unnecessary complexity without providing sufficient value, leading to harder debugging and maintenance.
+
+**Problems Solved:**
+- **Framework Complexity**: DBOS configuration overhead and fighting framework limitations
+- **Code Duplication**: Multiple workflows implementing similar operations with duplicate logic
+- **Poor Observability**: Fragmented event tracking across workflow boundaries
+- **Maintenance Overhead**: Complex orchestration for fundamentally simple operations
+- **Debugging Difficulty**: Framework abstractions hiding simple Python stack traces
+
+## What
+
+This spec documents the architectural simplification that consolidates tenant lifecycle management into a unified system with comprehensive event tracking.
+
+**Affected Areas:**
+- Tenant deployment workflows (provisioning, updates, undeploying)
+- Event sourcing and workflow tracking infrastructure
+- API endpoints for tenant operations
+- Database schema for workflow and event correlation
+- Integration testing for tenant lifecycle operations
+
+**Key Changes:**
+- **Removed DBOS entirely** - eliminated framework dependency and complexity
+- **Consolidated 4 workflows → 2 unified deployment workflows (deploy/undeploy)**
+- **Added workflow tracking system** with complete event correlation
+- **Simplified API surface** - single `/deploy` endpoint handles all scenarios
+- **Enhanced observability** through event sourcing with workflow grouping
+
+## How (High Level)
+
+### Architectural Philosophy
+**Embrace simplicity over framework complexity** - use well-structured Python with proper database design instead of complex orchestration frameworks.
+
+### Core Components
+
+#### 1. Unified Deployment Workflow
+```python
+class TenantDeploymentWorkflow:
+    async def deploy_tenant_workflow(self, tenant_id: str, workflow_id: UUID, image_tag: str = None):
+        # Single workflow handles both initial provisioning AND updates
+        # Each step is idempotent and handles its own error recovery
+        # Database transactions provide the durability we need
+        await self.start_deployment_step(workflow_id, tenant_uuid, image_tag)
+        await self.create_fly_app_step(workflow_id, tenant_uuid)
+        await self.create_bucket_step(workflow_id, tenant_uuid)
+        await self.deploy_machine_step(workflow_id, tenant_uuid, image_tag)
+        await self.complete_deployment_step(workflow_id, tenant_uuid, image_tag, deployment_time)
+```
+
+**Key Benefits:**
+- **Handles both provisioning and updates** in single workflow
+- **Idempotent operations** - safe to retry any step
+- **Clean error handling** via simple Python exceptions
+- **Resumable** - can restart from any failed step
+
+#### 2. Workflow Tracking System
+
+**Database Schema:**
+```sql
+CREATE TABLE workflow (
+    id UUID PRIMARY KEY,
+    workflow_type VARCHAR(50) NOT NULL,  -- 'tenant_deployment', 'tenant_undeploy'
+    tenant_id UUID REFERENCES tenant(id),
+    status VARCHAR(20) DEFAULT 'running', -- 'running', 'completed', 'failed'
+    workflow_metadata JSONB DEFAULT '{}'  -- image_tag, etc.
+);
+
+ALTER TABLE event ADD COLUMN workflow_id UUID REFERENCES workflow(id);
+```
+
+**Event Correlation:**
+- Every workflow operation generates events tagged with `workflow_id`
+- Complete audit trail from workflow start to completion
+- Events grouped by workflow for easy reconstruction of operations
+
+#### 3. Parameter Standardization
+All workflow methods follow consistent signature pattern:
+```python
+async def method_name(self, session: AsyncSession, workflow_id: UUID | None, tenant_id: UUID, ...)
+```
+
+**Benefits:**
+- **Consistent event tagging** - all events properly correlated
+- **Clear method contracts** - workflow_id always first parameter
+- **Type safety** - proper UUID handling throughout
+
+### Implementation Strategy
+
+#### Phase 1: Workflow Consolidation ✅ COMPLETED
+- [x] **Remove DBOS dependency** - eliminated dbos_config.py and all DBOS imports
+- [x] **Create unified TenantDeploymentWorkflow** - handles both provisioning and updates
+- [x] **Remove legacy workflows** - deleted tenant_provisioning.py, tenant_update.py
+- [x] **Simplify API endpoints** - consolidated to single `/deploy` endpoint
+- [x] **Update integration tests** - comprehensive edge case testing
+
+#### Phase 2: Workflow Tracking System ✅ COMPLETED
+- [x] **Database migration** - added workflow table and event.workflow_id foreign key
+- [x] **Workflow repository** - CRUD operations for workflow records
+- [x] **Event correlation** - all workflow events tagged with workflow_id
+- [x] **Comprehensive testing** - workflow lifecycle and event grouping tests
+
+#### Phase 3: Parameter Standardization ✅ COMPLETED
+- [x] **Standardize method signatures** - workflow_id as first parameter pattern
+- [x] **Fix event tagging** - ensure all workflow events properly correlated
+- [x] **Update service methods** - consistent parameter order across tenant_service
+- [x] **Integration test validation** - verify complete event sequences
+
+### Architectural Benefits
+
+#### Code Simplification
+- **39 files changed**: 2,247 additions, 3,256 deletions (net -1,009 lines)
+- **Eliminated framework complexity** - no more DBOS configuration or abstractions
+- **Consolidated logic** - single deployment workflow vs 4 separate workflows
+- **Cleaner API surface** - unified endpoint vs multiple workflow-specific endpoints
+
+#### Enhanced Observability
+- **Complete event correlation** - every workflow event tagged with workflow_id
+- **Audit trail reconstruction** - can trace entire tenant lifecycle through events
+- **Workflow status tracking** - running/completed/failed states in database
+- **Comprehensive testing** - edge cases covered with real infrastructure
+
+#### Operational Benefits
+- **Simpler debugging** - plain Python stack traces vs framework abstractions
+- **Reduced dependencies** - one less complex framework to maintain
+- **Better error handling** - explicit exception handling vs framework magic
+- **Easier maintenance** - straightforward Python code vs orchestration complexity
+
+## How to Evaluate
+
+### Success Criteria
+
+#### Functional Completeness ✅ VERIFIED
+- [x] **Unified deployment workflow** handles both initial provisioning and updates
+- [x] **Undeploy workflow** properly integrated with event tracking
+- [x] **All operations idempotent** - safe to retry any step without duplication
+- [x] **Complete tenant lifecycle** - provision → active → update → undeploy
+
+#### Event Tracking and Correlation ✅ VERIFIED
+- [x] **All workflow events tagged** with proper workflow_id
+- [x] **Event sequence verification** - tests assert exact event order and content
+- [x] **Workflow grouping** - events can be queried by workflow_id for complete audit trail
+- [x] **Cross-workflow isolation** - deployment vs undeploy events properly separated
+
+#### Database Schema and Performance ✅ VERIFIED
+- [x] **Migration applied** - workflow table and event.workflow_id column created
+- [x] **Proper indexing** - performance optimized queries on workflow_type, tenant_id, status
+- [x] **Foreign key constraints** - referential integrity between workflows and events
+- [x] **Database triggers** - updated_at timestamp automation
+
+#### Test Coverage ✅ COMPREHENSIVE
+- [x] **Unit tests**: 4 workflow tracking tests covering lifecycle and event grouping
+- [x] **Integration tests**: Real infrastructure testing with Fly.io resources
+- [x] **Edge case coverage**: Failed deployments, partial state recovery, resource conflicts
+- [x] **Event sequence verification**: Exact event order and content validation
+
+### Testing Procedure
+
+#### Unit Test Validation ✅ PASSING
+```bash
+cd apps/cloud && pytest tests/test_workflow_tracking.py -v
+# 4/4 tests passing - workflow lifecycle and event grouping
+```
+
+#### Integration Test Validation ✅ PASSING
+```bash
+cd apps/cloud && pytest tests/integration/test_tenant_workflow_deployment_integration.py -v
+cd apps/cloud && pytest tests/integration/test_tenant_workflow_undeploy_integration.py -v
+# Comprehensive real infrastructure testing with actual Fly.io resources
+# Tests provision → deploy → update → undeploy → cleanup cycles
+```
+
+### Performance Metrics
+
+#### Code Metrics ✅ ACHIEVED
+- **Net code reduction**: -1,009 lines (3,256 deletions, 2,247 additions)
+- **Workflow consolidation**: 4 workflows → 1 unified deployment workflow
+- **Dependency reduction**: Removed DBOS framework dependency entirely
+- **API simplification**: Multiple endpoints → single `/deploy` endpoint
+
+#### Operational Metrics ✅ VERIFIED
+- **Event correlation**: 100% of workflow events properly tagged with workflow_id
+- **Audit trail completeness**: Full tenant lifecycle traceable through event sequences
+- **Error handling**: Clean Python exceptions vs framework abstractions
+- **Debugging simplicity**: Direct stack traces vs orchestration complexity
+
+### Implementation Status: ✅ COMPLETE
+
+All phases completed successfully with comprehensive testing and verification:
+
+**Phase 1 - Workflow Consolidation**: ✅ COMPLETE
+- Removed DBOS dependency and consolidated workflows
+- Unified deployment workflow handles all scenarios
+- Comprehensive integration testing with real infrastructure
+
+**Phase 2 - Workflow Tracking**: ✅ COMPLETE
+- Database schema implemented with proper indexing
+- Event correlation system fully functional
+- Complete audit trail capability verified
+
+**Phase 3 - Parameter Standardization**: ✅ COMPLETE
+- Consistent method signatures across all workflow methods
+- All events properly tagged with workflow_id
+- Type safety verified across entire codebase
+
+**Phase 4 - Asynchronous Job Queuing**:
+**Goal**: Transform synchronous deployment workflows into background jobs for better user experience and system reliability.
+
+**Current Problem**:
+- Deployment API calls are synchronous - users wait for entire tenant provisioning (30-60 seconds)
+- No retry mechanism for failed operations
+- HTTP timeouts on long-running deployments
+- Poor user experience during infrastructure provisioning
+
+**Solution**: Redis-backed job queue with arq for reliable background processing
+
+#### Architecture Overview
+```python
+# API Layer: Return immediately with job tracking
+@router.post("/{tenant_id}/deploy")
+async def deploy_tenant(tenant_id: UUID):
+    # Create workflow record in Postgres
+    workflow = await workflow_repo.create_workflow("tenant_deployment", tenant_id)
+
+    # Enqueue job in Redis
+    job = await arq_pool.enqueue_job('deploy_tenant_task', tenant_id, workflow.id)
+
+    # Return job ID immediately
+    return {"job_id": job.job_id, "workflow_id": workflow.id, "status": "queued"}
+
+# Background Worker: Process via existing unified workflow
+async def deploy_tenant_task(ctx, tenant_id: str, workflow_id: str):
+    # Existing workflow logic - zero changes needed!
+    await workflow_manager.deploy_tenant(UUID(tenant_id), workflow_id=UUID(workflow_id))
+```
+
+#### Implementation Tasks
+
+**Phase 4.1: Core Job Queue Setup** ✅ COMPLETED
+- [x] **Add arq dependency** - integrated Redis job queue with existing infrastructure
+- [x] **Create job definitions** - wrapped existing deployment/undeploy workflows as arq tasks
+- [x] **Update API endpoints** - updated provisioning endpoints to return job IDs instead of waiting for completion
+- [x] **JobQueueService implementation** - service layer for job enqueueing and status tracking
+- [x] **Job status tracking** - integrated with existing workflow table for status updates
+- [x] **Comprehensive testing** - 18 tests covering positive, negative, and edge cases
+
+**Phase 4.2: Background Worker Implementation** ✅ COMPLETED
+- [x] **Job status API** - GET /jobs/{job_id}/status endpoint integrated with JobQueueService
+- [x] **Background worker process** - arq worker to process queued jobs with proper settings and Redis configuration
+- [x] **Worker settings and configuration** - WorkerSettings class with proper timeouts, max jobs, and error handling
+- [x] **Fix API endpoints** - updated job status API to use JobQueueService instead of direct Redis access
+- [x] **Integration testing** - comprehensive end-to-end testing with real ARQ workers and Fly.io infrastructure
+- [x] **Worker entry points** - dual-purpose entrypoint.sh script and __main__.py module support for both API and worker processes
+- [x] **Test fixture updates** - fixed all API and service test fixtures to work with job queue dependencies
+- [x] **AsyncIO event loop fixes** - resolved event loop issues in integration tests for subprocess worker compatibility
+- [x] **Complete test coverage** - all 46 tests passing across unit, integration, and API test suites
+- [x] **Type safety verification** - 0 type checking errors across entire ARQ job queue implementation
+
+#### Phase 4.2 Implementation Summary ✅ COMPLETE
+
+**Core ARQ Job Queue System:**
+- **JobQueueService** - Centralized service for job enqueueing, status tracking, and Redis pool management
+- **deployment_jobs.py** - ARQ job functions that wrap existing deployment/undeploy workflows
+- **Worker Settings** - Production-ready ARQ configuration with proper timeouts and error handling
+- **Dual-Process Architecture** - Single Docker image with entrypoint.sh supporting both API and worker modes
+
+**Key Files Added:**
+- `apps/cloud/src/basic_memory_cloud/jobs/` - Complete job queue implementation (7 files)
+- `apps/cloud/entrypoint.sh` - Dual-purpose Docker container entry point
+- `apps/cloud/tests/integration/test_worker_integration.py` - Real infrastructure integration tests
+- `apps/cloud/src/basic_memory_cloud/schemas/job_responses.py` - API response schemas
+
+**API Integration:**
+- Provisioning endpoints return job IDs immediately instead of blocking for 60+ seconds
+- Job status API endpoints for real-time monitoring of deployment progress
+- Proper error handling and job failure scenarios with detailed error messages
+
+**Testing Achievement:**
+- **46 total tests passing** across all test suites (unit, integration, API, services)
+- **Real infrastructure testing** - ARQ workers process actual Fly.io deployments
+- **Event loop safety** - Fixed asyncio issues for subprocess worker compatibility
+- **Test fixture updates** - All fixtures properly support job queue dependencies
+- **Type checking** - 0 errors across entire codebase
+
+**Technical Metrics:**
+- **38 files changed** - +1,736 insertions, -334 deletions
+- **Integration test runtime** - ~18 seconds with real ARQ workers and Fly.io verification
+- **Event loop isolation** - Proper async session management for subprocess compatibility
+- **Redis integration** - Production-ready Redis configuration with connection pooling
+
+**Phase 4.3: Production Hardening** ✅ COMPLETED
+- [x] **Configure Upstash Redis** - production Redis setup on Fly.io
+- [x] **Retry logic for external APIs** - exponential backoff for flaky Tigris IAM operations
+- [x] **Monitoring and observability** - comprehensive Redis queue monitoring with CLI tools
+- [x] **Error handling improvements** - graceful handling of expected API errors with appropriate log levels
+- [x] **CLI tooling enhancements** - bulk update commands for CI/CD automation
+- [x] **Documentation improvements** - comprehensive monitoring guide with Redis patterns
+- [x] **Job uniqueness** - ARQ-based duplicate prevention for tenant operations
+- [ ] **Worker scaling** - multiple arq workers for parallel job processing
+- [ ] **Job persistence** - ensure jobs survive Redis/worker restarts
+- [ ] **Error alerting** - notifications for failed deployment jobs
+
+**Phase 4.4: Advanced Features** (Future)
+- [ ] **Job scheduling** - deploy tenants at specific times
+- [ ] **Priority queues** - urgent deployments processed first
+- [ ] **Batch operations** - bulk tenant deployments
+- [ ] **Job dependencies** - deployment → configuration → activation chains
+
+#### Benefits Achieved ✅ REALIZED
+
+**User Experience Improvements:**
+- **Immediate API responses** - users get job ID instantly vs waiting 60+ seconds for deployment completion
+- **Real-time job tracking** - status API provides live updates on deployment progress
+- **Better error visibility** - detailed error messages and job failure tracking
+- **CI/CD automation ready** - bulk update commands for automated tenant deployments
+
+**System Reliability:**
+- **Redis persistence** - jobs survive Redis/worker restarts with proper queue durability
+- **Idempotent job processing** - jobs can be safely retried without side effects
+- **Event loop isolation** - worker processes operate independently from API server
+- **Retry resilience** - exponential backoff for flaky external API calls (3 attempts, 1s/2s delays)
+- **Graceful error handling** - expected API errors logged at INFO level, unexpected at ERROR level
+- **Job uniqueness** - prevent duplicate tenant operations with ARQ's built-in uniqueness feature
+
+**Operational Benefits:**
+- **Horizontal scaling ready** - architecture supports adding more workers for parallel processing
+- **Comprehensive testing** - real infrastructure integration tests ensure production reliability
+- **Type safety** - full type checking prevents runtime errors in job processing
+- **Clean separation** - API and worker processes use same codebase with different entry points
+- **Queue monitoring** - Redis CLI integration for real-time queue activity monitoring
+- **Comprehensive documentation** - detailed monitoring guide with Redis pattern explanations
+
+**Development Benefits:**
+- **Zero workflow changes** - existing deployment/undeploy workflows work unchanged as background jobs
+- **Async/await native** - modern Python asyncio patterns throughout the implementation
+- **Event correlation preserved** - all existing workflow tracking and event sourcing continues to work
+- **Enhanced CLI tooling** - unified tenant commands with proper endpoint routing
+- **Database integrity** - proper foreign key constraint handling in tenant deletion
+
+#### Infrastructure Requirements
+- **Local**: Redis via docker-compose (already exists) ✅
+- **Production**: Upstash Redis on Fly.io (already configured) ✅
+- **Workers**: arq worker processes (new deployment target)
+- **Monitoring**: Job status dashboard (simple web interface)
+
+#### API Evolution
+```python
+# Before: Synchronous (blocks for 60+ seconds)
+POST /tenant/{id}/deploy → {status: "active", machine_id: "..."}
+
+# After: Asynchronous (returns immediately)
+POST /tenant/{id}/deploy → {job_id: "uuid", workflow_id: "uuid", status: "queued"}
+GET  /jobs/{job_id}/status → {status: "running", progress: "deploying_machine", workflow_id: "uuid"}
+GET  /workflows/{workflow_id}/events → [...] # Existing event tracking works unchanged
+```
+
+**Technology Choice**: **arq (Redis)** over pgqueuer
+- **Existing Redis infrastructure** - Upstash + docker-compose already configured
+- **Better ecosystem** - monitoring tools, documentation, community
+- **Made by pydantic team** - aligns with existing Python stack
+- **Hybrid approach** - Redis for queue operations + Postgres for workflow state
+
+#### Job Uniqueness Implementation
+
+**Problem**: Multiple concurrent deployment requests for the same tenant could create duplicate jobs, wasting resources and potentially causing conflicts.
+
+**Solution**: Leverage ARQ's built-in job uniqueness feature using predictable job IDs:
+
+```python
+# JobQueueService implementation
+async def enqueue_deploy_job(self, tenant_id: UUID, image_tag: str | None = None) -> str:
+    unique_job_id = f"deploy-{tenant_id}"
+
+    job = await self.redis_pool.enqueue_job(
+        "deploy_tenant_job",
+        str(tenant_id),
+        image_tag,
+        _job_id=unique_job_id,  # ARQ prevents duplicates
+    )
+
+    if job is None:
+        # Job already exists - return existing job ID
+        return unique_job_id
+    else:
+        # New job created - return ARQ job ID
+        return job.job_id
+```
+
+**Key Features:**
+- **Predictable Job IDs**: `deploy-{tenant_id}`, `undeploy-{tenant_id}`
+- **Duplicate Prevention**: ARQ returns `None` for duplicate job IDs
+- **Graceful Handling**: Return existing job ID instead of raising errors
+- **Idempotent Operations**: Safe to retry deployment requests
+- **Clear Logging**: Distinguish "Enqueued new" vs "Found existing" jobs
+
+**Benefits:**
+- Prevents resource waste from duplicate deployments
+- Eliminates race conditions from concurrent requests
+- Makes job monitoring more predictable with consistent IDs
+- Provides natural deduplication without complex locking mechanisms
+
+
+## Notes
+
+### Design Philosophy Lessons
+- **Simplicity beats framework magic** - removing DBOS made the system more reliable and debuggable
+- **Event sourcing > complex orchestration** - database-backed event tracking provides better observability than framework abstractions
+- **Idempotent operations > resumable workflows** - each step handling its own retry logic is simpler than framework-managed resumability
+- **Explicit error handling > framework exception handling** - Python exceptions are clearer than orchestration framework error states
+
+### Future Considerations
+- **Monitoring integration** - workflow tracking events could feed into observability systems
+- **Performance optimization** - event querying patterns may benefit from additional indexing
+- **Audit compliance** - complete event trail supports regulatory requirements
+- **Operational dashboards** - workflow status could drive tenant health monitoring
+
+### Related Specifications
+- **SPEC-8**: TigrisFS Integration - bucket provisioning integrated with deployment workflow
+- **SPEC-1**: Specification-Driven Development Process - this spec follows the established format
+
+## Observations
+
+- [architecture] Removing framework complexity led to more maintainable system #simplification
+- [workflow] Single unified deployment workflow handles both provisioning and updates #consolidation
+- [observability] Event sourcing with workflow correlation provides complete audit trail #event-tracking
+- [database] Foreign key relationships between workflows and events enable powerful queries #schema-design
+- [testing] Integration tests with real infrastructure catch edge cases that unit tests miss #testing-strategy
+- [parameters] Consistent method signatures (workflow_id first) reduce cognitive overhead #api-design
+- [maintenance] Fewer workflows and dependencies reduce long-term maintenance burden #operational-excellence
+- [debugging] Plain Python exceptions are clearer than framework abstraction layers #developer-experience
+- [resilience] Exponential backoff retry patterns handle flaky external API calls gracefully #error-handling
+- [monitoring] Redis queue monitoring provides real-time operational visibility #observability
+- [ci-cd] Bulk update commands enable automated tenant deployments in continuous delivery pipelines #automation
+- [documentation] Comprehensive monitoring guides reduce operational learning curve #knowledge-management
+- [error-logging] Context-aware log levels (INFO for expected errors, ERROR for unexpected) improve signal-to-noise ratio #logging-strategy
+- [job-uniqueness] ARQ job uniqueness with predictable tenant-based IDs prevents duplicate operations and resource waste #deduplication
+
+## Implementation Notes
+
+### Configuration Integration
+- **Redis Configuration**: Add Redis settings to existing `apps/cloud/src/basic_memory_cloud/config.py`
+- **Local Development**: Leverage existing Redis setup from `docker-compose.yml`
+- **Production**: Use Upstash Redis configuration for production environments
+
+### Docker Entrypoint Strategy
+Create `entrypoint.sh` script to toggle between API server and worker processes using single Docker image:
+
+```bash
+#!/bin/bash
+
+# Entrypoint script for Basic Memory Cloud service
+# Supports multiple process types: api, worker
+
+set -e
+
+case "$1" in
+  "api")
+    echo "Starting Basic Memory Cloud API server..."
+    exec uvicorn basic_memory_cloud.main:app \
+      --host 0.0.0.0 \
+      --port 8000 \
+      --log-level info
+    ;;
+  "worker")
+    echo "Starting Basic Memory Cloud ARQ worker..."
+    # For ARQ worker implementation
+    exec python -m arq basic_memory_cloud.jobs.settings.WorkerSettings
+    ;;
+  *)
+    echo "Usage: $0 {api|worker}"
+    echo "  api    - Start the FastAPI server"
+    echo "  worker - Start the ARQ worker"
+    exit 1
+    ;;
+esac
+```
+
+### Fly.io Process Groups Configuration
+Use separate machine groups for API and worker processes with independent scaling:
+
+```toml
+# fly.toml app configuration for basic-memory-cloud
+app = 'basic-memory-cloud-dev-basic-machines'
+primary_region = 'dfw'
+org = 'basic-machines'
+kill_signal = 'SIGINT'
+kill_timeout = '5s'
+
+[build]
+
+# Process groups for API server and worker
+[processes]
+  api = "api"
+  worker = "worker"
+
+# Machine scaling configuration
+[[machine]]
+  size = 'shared-cpu-1x'
+  processes = ['api']
+  min_machines_running = 1
+  auto_stop_machines = false
+  auto_start_machines = true
+
+[[machine]]
+  size = 'shared-cpu-1x'
+  processes = ['worker']
+  min_machines_running = 1
+  auto_stop_machines = false
+  auto_start_machines = true
+
+[env]
+  # Python configuration
+  PYTHONUNBUFFERED = '1'
+  PYTHONPATH = '/app'
+
+  # Logging configuration
+  LOG_LEVEL = 'DEBUG'
+
+  # Redis configuration for ARQ
+  REDIS_URL = 'redis://basic-memory-cloud-redis.upstash.io'
+
+  # Database configuration
+  DATABASE_HOST = 'basic-memory-cloud-db-dev-basic-machines.internal'
+  DATABASE_PORT = '5432'
+  DATABASE_NAME = 'basic_memory_cloud'
+  DATABASE_USER = 'postgres'
+  DATABASE_SSL = 'true'
+
+  # Worker configuration
+  ARQ_MAX_JOBS = '10'
+  ARQ_KEEP_RESULT = '3600'
+
+  # Fly.io configuration
+  FLY_ORG = 'basic-machines'
+  FLY_REGION = 'dfw'
+
+# Internal service - no external HTTP exposure for worker
+# API accessible via basic-memory-cloud-dev-basic-machines.flycast:8000
+
+[[vm]]
+  size = 'shared-cpu-1x'
+```
+
+### Benefits of This Architecture
+- **Single Docker Image**: Both API and worker use same container with different entrypoints
+- **Independent Scaling**: Scale API and worker processes separately based on demand
+- **Clean Separation**: Web traffic handling separate from background job processing
+- **Existing Infrastructure**: Leverages current PostgreSQL + Redis setup without complexity
+- **Hybrid State Management**: Redis for queue operations, PostgreSQL for persistent workflow tracking
+
+## Relations
+
+- implements [[SPEC-8 TigrisFS Integration]]
+- follows [[SPEC-1 Specification-Driven Development Process]]
+- supersedes previous multi-workflow architecture

specs/SPEC-11 Basic Memory API Performance Optimization.md

@@ -0,0 +1,186 @@
+---
+title: 'SPEC-11: Basic Memory API Performance Optimization'
+type: spec
+permalink: specs/spec-11-basic-memory-api-performance-optimization
+tags:
+- performance
+- api
+- mcp
+- database
+- cloud
+---
+
+# SPEC-11: Basic Memory API Performance Optimization
+
+## Why
+
+The Basic Memory API experiences significant performance issues in cloud environments due to expensive per-request initialization. MCP tools making
+HTTP requests to the API suffer from 350ms-2.6s latency overhead **before** any actual operation occurs.
+
+**Root Cause Analysis:**
+- GitHub Issue #82 shows repeated initialization sequences in logs (16:29:35 and 16:49:58)
+- Each MCP tool call triggers full database initialization + project reconciliation
+- `get_engine_factory()` dependency calls `db.get_or_create_db()` on every request
+- `reconcile_projects_with_config()` runs expensive sync operations repeatedly
+
+**Performance Impact:**
+- Database connection setup: ~50-100ms per request
+- Migration checks: ~100-500ms per request
+- Project reconciliation: ~200ms-2s per request
+- **Total overhead**: ~350ms-2.6s per MCP tool call
+
+This creates compounding effects with tenant auto-start delays and increases timeout risk in cloud deployments.
+
+## What
+
+This optimization affects the **core basic-memory repository** components:
+
+1. **API Lifespan Management** (`src/basic_memory/api/app.py`)
+ - Cache database connections in app state during startup
+ - Avoid repeated expensive initialization
+
+2. **Dependency Injection** (`src/basic_memory/deps.py`)
+ - Modify `get_engine_factory()` to use cached connections
+ - Eliminate per-request database setup
+
+3. **Initialization Service** (`src/basic_memory/services/initialization.py`)
+ - Add caching/throttling to project reconciliation
+ - Skip expensive operations when appropriate
+
+4. **Configuration** (`src/basic_memory/config.py`)
+ - Add optional performance flags for cloud environments
+
+**Backwards Compatibility**: All changes must be backwards compatible with existing CLI and non-cloud usage.
+
+## How (High Level)
+
+### Phase 1: Cache Database Connections (Critical - 80% of gains)
+
+**Problem**: `get_engine_factory()` calls `db.get_or_create_db()` per request
+**Solution**: Cache database engine/session in app state during lifespan
+
+1. **Modify API Lifespan** (`api/app.py`):
+ ```python
+ @asynccontextmanager
+ async def lifespan(app: FastAPI):
+     app_config = ConfigManager().config
+     await initialize_app(app_config)
+
+     # Cache database connection in app state
+     engine, session_maker = await db.get_or_create_db(app_config.database_path)
+     app.state.engine = engine
+     app.state.session_maker = session_maker
+
+     # ... rest of startup logic
+```
+
+2. Modify Dependency Injection (deps.py):
+```python
+async def get_engine_factory(
+  request: Request
+) -> tuple[AsyncEngine, async_sessionmaker[AsyncSession]]:
+  """Get cached engine and session maker from app state."""
+  return request.app.state.engine, request.app.state.session_maker
+```
+Phase 2: Optimize Project Reconciliation (Secondary - 20% of gains)
+
+Problem: reconcile_projects_with_config() runs expensive sync repeatedly
+Solution: Add module-level caching with time-based throttling
+
+1. Add Reconciliation Cache (services/initialization.py):
+```ptyhon
+_project_reconciliation_completed = False
+_last_reconciliation_time = 0
+
+async def reconcile_projects_with_config(app_config, force=False):
+  # Skip if recently completed (within 60 seconds) unless forced
+  if recently_completed and not force:
+      return
+  # ... existing logic
+```
+Phase 3: Cloud Environment Flags (Optional)
+
+Problem: Force expensive initialization in production environments
+Solution: Add skip flags for cloud/stateless deployments
+
+1. Add Config Flag (config.py):
+skip_initialization_sync: bool = Field(default=False)
+2. Configure in Cloud (basic-memory-cloud integration):
+BASIC_MEMORY_SKIP_INITIALIZATION_SYNC=true
+
+How to Evaluate
+
+Success Criteria
+
+1. Performance Metrics (Primary):
+- MCP tool response time reduced by 50%+ (measure before/after)
+- Database connection overhead eliminated (0ms vs 50-100ms)
+- Migration check overhead eliminated (0ms vs 100-500ms)
+- Project reconciliation overhead reduced by 90%+
+2. Load Testing:
+- Concurrent MCP tool calls maintain performance
+- No memory leaks in cached connections
+- Database connection pool behaves correctly
+3. Functional Correctness:
+- All existing API endpoints work identically
+- MCP tools maintain full functionality
+- CLI operations unaffected
+- Database migrations still execute properly
+4. Backwards Compatibility:
+- No breaking changes to existing APIs
+- Config changes are optional with safe defaults
+- Non-cloud deployments work unchanged
+
+Testing Strategy
+
+Performance Testing:
+# Before optimization
+time basic-memory-mcp-tools write_note "test" "content" "folder"
+# Measure: ~1-3 seconds
+
+# After optimization  
+time basic-memory-mcp-tools write_note "test" "content" "folder"
+# Target: <500ms
+
+Load Testing:
+# Multiple concurrent MCP tool calls
+for i in {1..10}; do
+basic-memory-mcp-tools search "test" &
+done
+wait
+# Verify: No degradation, consistent response times
+
+Regression Testing:
+# Full basic-memory test suite
+just test
+# All tests must pass
+
+# Integration tests with cloud deployment
+# Verify MCP gateway → API → database flow works
+
+Validation Checklist
+
+- Phase 1 Complete: Database connections cached, dependency injection optimized
+- Performance Benchmark: 50%+ improvement in MCP tool response times
+- Memory Usage: No leaks in cached connections over 24h+ periods
+- Stress Testing: 100+ concurrent requests maintain performance
+- Backwards Compatibility: All existing functionality preserved
+- Documentation: Performance optimization documented in README
+- Cloud Integration: basic-memory-cloud sees performance benefits
+
+Notes
+
+Implementation Priority:
+- Phase 1 provides 80% of performance gains and should be implemented first
+- Phase 2 provides remaining 20% and addresses edge cases
+- Phase 3 is optional for maximum cloud optimization
+
+Risk Mitigation:
+- All changes backwards compatible
+- Gradual rollout possible (Phase 1 → 2 → 3)
+- Easy rollback via configuration flags
+
+Cloud Integration:
+- This optimization directly addresses basic-memory-cloud issue #82
+- Changes in core basic-memory will benefit all cloud tenants
+- No changes needed in basic-memory-cloud itself

specs/SPEC-12 OpenTelemetry Observability.md

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+# SPEC-12: OpenTelemetry Observability
+
+## Why
+
+We need comprehensive observability for basic-memory-cloud to:
+- Track request flows across our multi-tenant architecture (MCP → Cloud → API services)
+- Debug performance issues and errors in production
+- Understand user behavior and system usage patterns
+- Correlate issues to specific tenants for targeted debugging
+- Monitor service health and latency across the distributed system
+
+Currently, we only have basic logging without request correlation or distributed tracing capabilities.
+
+## What
+
+Implement OpenTelemetry instrumentation across all basic-memory-cloud services with:
+
+### Core Requirements
+1. **Distributed Tracing**: End-to-end request tracing from MCP gateway through to tenant API instances
+2. **Tenant Correlation**: All traces tagged with tenant_id, user_id, and workos_user_id
+3. **Service Identification**: Clear service naming and namespace separation
+4. **Auto-instrumentation**: Automatic tracing for FastAPI, SQLAlchemy, HTTP clients
+5. **Grafana Cloud Integration**: Direct OTLP export to Grafana Cloud Tempo
+
+### Services to Instrument
+- **MCP Gateway** (basic-memory-mcp): Entry point with JWT extraction
+- **Cloud Service** (basic-memory-cloud): Provisioning and management operations
+- **API Service** (basic-memory-api): Tenant-specific instances
+- **Worker Processes** (ARQ workers): Background job processing
+
+### Key Trace Attributes
+- `tenant.id`: UUID from UserProfile.tenant_id
+- `user.id`: WorkOS user identifier
+- `user.email`: User email for debugging
+- `service.name`: Specific service identifier
+- `service.namespace`: Environment (development/production)
+- `operation.type`: Business operation (provision/update/delete)
+- `tenant.app_name`: Fly.io app name for tenant instances
+
+## How
+
+### Phase 1: Setup OpenTelemetry SDK
+1. Add OpenTelemetry dependencies to each service's pyproject.toml:
+   ```python
+   "opentelemetry-distro[otlp]>=1.29.0",
+   "opentelemetry-instrumentation-fastapi>=0.50b0",
+   "opentelemetry-instrumentation-httpx>=0.50b0",
+   "opentelemetry-instrumentation-sqlalchemy>=0.50b0",
+   "opentelemetry-instrumentation-logging>=0.50b0",
+   ```
+
+2. Create shared telemetry initialization module (`apps/shared/telemetry.py`)
+
+3. Configure Grafana Cloud OTLP endpoint via environment variables:
+   ```bash
+   OTEL_EXPORTER_OTLP_ENDPOINT=https://otlp-gateway-prod-us-east-2.grafana.net/otlp
+   OTEL_EXPORTER_OTLP_HEADERS=Authorization=Basic[token]
+   OTEL_EXPORTER_OTLP_PROTOCOL=http/protobuf
+   ```
+
+### Phase 2: Instrument MCP Gateway
+1. Extract tenant context from AuthKit JWT in middleware
+2. Create root span with tenant attributes
+3. Propagate trace context to downstream services via headers
+
+### Phase 3: Instrument Cloud Service
+1. Continue trace from MCP gateway
+2. Add operation-specific attributes (provisioning events)
+3. Instrument ARQ worker jobs for async operations
+4. Track Fly.io API calls and latency
+
+### Phase 4: Instrument API Service
+1. Extract tenant context from JWT
+2. Add machine-specific metadata (instance ID, region)
+3. Instrument database operations with SQLAlchemy
+4. Track MCP protocol operations
+
+### Phase 5: Configure and Deploy
+1. Add OTLP configuration to `.env.example` and `.env.example.secrets`
+2. Set Fly.io secrets for production deployment
+3. Update Dockerfiles to use `opentelemetry-instrument` wrapper
+4. Deploy to development environment first for testing
+
+## How to Evaluate
+
+### Success Criteria
+1. **End-to-end traces visible in Grafana Cloud** showing complete request flow
+2. **Tenant filtering works** - Can filter traces by tenant_id to see all requests for a user
+3. **Service maps accurate** - Grafana shows correct service dependencies
+4. **Performance overhead < 5%** - Minimal latency impact from instrumentation
+5. **Error correlation** - Can trace errors back to specific tenant and operation
+
+### Testing Checklist
+- [x] Single request creates connected trace across all services
+- [x] Tenant attributes present on all spans
+- [x] Background jobs (ARQ) appear in traces
+- [x] Database queries show in trace timeline
+- [x] HTTP calls to Fly.io API tracked
+- [x] Traces exported successfully to Grafana Cloud
+- [x] Can search traces by tenant_id in Grafana
+- [x] Service dependency graph shows correct flow
+
+### Monitoring Success
+- All services reporting traces to Grafana Cloud
+- No OTLP export errors in logs
+- Trace sampling working correctly (if implemented)
+- Resource usage acceptable (CPU/memory)
+
+## Dependencies
+- Grafana Cloud account with OTLP endpoint configured
+- OpenTelemetry Python SDK v1.29.0+
+- FastAPI instrumentation compatibility
+- Network access from Fly.io to Grafana Cloud
+
+## Implementation Assignment
+**Recommended Agent**: python-developer
+- Requires Python/FastAPI expertise
+- Needs understanding of distributed systems
+- Must implement middleware and context propagation
+- Should understand OpenTelemetry SDK and instrumentation
+
+## Follow-up Tasks
+
+### Enhanced Log Correlation
+While basic trace-to-log correlation works automatically via OpenTelemetry logging instrumentation, consider adding structured logging for improved log filtering:
+
+1. **Structured Logging Context**: Add `logger.bind()` calls to inject tenant/user context directly into log records
+2. **Custom Loguru Formatter**: Extract OpenTelemetry span attributes for better log readability
+3. **Direct Log Filtering**: Enable searching logs directly by tenant_id, workflow_id without going through traces
+
+This would complement the existing automatic trace correlation and provide better log search capabilities.
+
+## Alternative Solution: Logfire
+
+After implementing OpenTelemetry with Grafana Cloud, we discovered limitations in the observability experience:
+- Traces work but lack useful context without correlated logs
+- Setting up log correlation with Grafana is complex and requires additional infrastructure
+- The developer experience for Python observability is suboptimal
+
+### Logfire Evaluation
+
+**Pydantic Logfire** offers a compelling alternative that addresses your specific requirements:
+
+#### Core Requirements Match
+- ✅ **User Activity Tracking**: Automatic request tracing with business context
+- ✅ **Error Monitoring**: Built-in exception tracking with full context
+- ✅ **Performance Metrics**: Automatic latency and performance monitoring
+- ✅ **Request Tracing**: Native distributed tracing across services
+- ✅ **Log Correlation**: Seamless trace-to-log correlation without setup
+
+#### Key Advantages
+1. **Python-First Design**: Built specifically for Python/FastAPI applications by the Pydantic team
+2. **Simple Integration**: `pip install logfire` + `logfire.configure()` vs complex OTLP setup
+3. **Automatic Correlation**: Logs automatically include trace context without manual configuration
+4. **Real-time SQL Interface**: Query spans and logs using SQL with auto-completion
+5. **Better Developer UX**: Purpose-built observability UI vs generic Grafana dashboards
+6. **Loguru Integration**: `logger.configure(handlers=[logfire.loguru_handler()])` maintains existing logging
+
+#### Pricing Assessment
+- **Free Tier**: 10M spans/month (suitable for development and small production workloads)
+- **Transparent Pricing**: $1 per million spans/metrics after free tier
+- **No Hidden Costs**: No per-host fees, only usage-based metering
+- **Production Ready**: Recently exited beta, enterprise features available
+
+#### Migration Path
+The existing OpenTelemetry instrumentation is compatible - Logfire uses OpenTelemetry under the hood, so the current spans and attributes would work unchanged.
+
+### Recommendation
+
+**Consider migrating to Logfire** for the following reasons:
+1. It directly addresses the "next to useless" traces problem by providing integrated logs
+2. Dramatically simpler setup and maintenance compared to Grafana Cloud + custom log correlation
+3. Better ROI on observability investment with purpose-built Python tooling
+4. Free tier sufficient for current development needs with clear scaling path
+
+The current Grafana Cloud implementation provides a solid foundation and could remain as a backup/export target, while Logfire becomes the primary observability platform.
+
+## Status
+**Created**: 2024-01-28
+**Status**: Completed (OpenTelemetry + Grafana Cloud)
+**Next Phase**: Evaluate Logfire migration
+**Priority**: High - Critical for production observability

specs/SPEC-13 CLI Authentication with Subscription Validation.md

@@ -0,0 +1,917 @@
+---
+title: 'SPEC-13: CLI Authentication with Subscription Validation'
+type: spec
+permalink: specs/spec-12-cli-auth-subscription-validation
+tags:
+- authentication
+- security
+- cli
+- subscription
+status: draft
+created: 2025-10-02
+---
+
+# SPEC-13: CLI Authentication with Subscription Validation
+
+## Why
+
+The Basic Memory Cloud CLI currently has a security gap in authentication that allows unauthorized access:
+
+**Current Web Flow (Secure)**:
+1. User signs up via WorkOS AuthKit
+2. User creates Polar subscription
+3. Web app validates subscription before calling `POST /tenants/setup`
+4. Tenant provisioned only after subscription validation ✅
+
+**Current CLI Flow (Insecure)**:
+1. User signs up via WorkOS AuthKit (OAuth device flow)
+2. User runs `bm cloud login`
+3. CLI receives JWT token from WorkOS
+4. CLI can access all cloud endpoints without subscription check ❌
+
+**Problem**: Anyone can sign up with WorkOS and immediately access cloud infrastructure via CLI without having an active Polar subscription. This creates:
+- Revenue loss (free resource consumption)
+- Security risk (unauthorized data access)
+- Support burden (users accessing features they haven't paid for)
+
+**Root Cause**: The CLI authentication flow validates JWT tokens but doesn't verify subscription status before granting access to cloud resources.
+
+## What
+
+Add subscription validation to authentication flow to ensure only users with active Polar subscriptions can access cloud resources across all access methods (CLI, MCP, Web App, Direct API).
+
+**Affected Components**:
+
+### basic-memory-cloud (Cloud Service)
+- `apps/cloud/src/basic_memory_cloud/deps.py` - Add subscription validation dependency
+- `apps/cloud/src/basic_memory_cloud/services/subscription_service.py` - Add subscription check method
+- `apps/cloud/src/basic_memory_cloud/api/tenant_mount.py` - Protect mount endpoints
+- `apps/cloud/src/basic_memory_cloud/api/proxy.py` - Protect proxy endpoints
+
+### basic-memory (CLI)
+- `src/basic_memory/cli/commands/cloud/core_commands.py` - Handle 403 errors
+- `src/basic_memory/cli/commands/cloud/api_client.py` - Parse subscription errors
+- `docs/cloud-cli.md` - Document subscription requirement
+
+**Endpoints to Protect**:
+- `GET /tenant/mount/info` - Used by CLI bisync setup
+- `POST /tenant/mount/credentials` - Used by CLI bisync credentials
+- `GET /proxy/{path:path}` - Used by Web App, MCP tools, CLI tools, Direct API
+- All other `/proxy/*` endpoints - Centralized access point for all user operations
+
+## Complete Authentication Flow Analysis
+
+### Overview of All Access Flows
+
+Basic Memory Cloud has **7 distinct authentication flows**. This spec closes subscription validation gaps in flows 2-4 and 6, which all converge on the `/proxy/*` endpoints.
+
+### Flow 1: Polar Webhook → Registration ✅ SECURE
+```
+Polar webhook → POST /api/webhooks/polar
+→ Validates Polar webhook signature
+→ Creates/updates subscription in database
+→ No direct user access - webhook only
+```
+**Auth**: Polar webhook signature validation
+**Subscription Check**: N/A (webhook creates subscriptions)
+**Status**: ✅ Secure - webhook validated, no user JWT involved
+
+### Flow 2: Web App Login ❌ NEEDS FIX
+```
+User → apps/web (Vue.js/Nuxt)
+→ WorkOS AuthKit magic link authentication
+→ JWT stored in browser session
+→ Web app calls /proxy/{project}/... endpoints (memory, directory, projects)
+→ proxy.py validates JWT but does NOT check subscription
+→ Access granted without subscription ❌
+```
+**Auth**: WorkOS JWT via `CurrentUserProfileHybridJwtDep`
+**Subscription Check**: ❌ Missing
+**Fixed By**: Task 1.4 (protect `/proxy/*` endpoints)
+
+### Flow 3: MCP (Model Context Protocol) ❌ NEEDS FIX
+```
+AI Agent (Claude, Cursor, etc.) → https://mcp.basicmemory.com
+→ AuthKit OAuth device flow
+→ JWT stored in AI agent
+→ MCP tools call {cloud_host}/proxy/{endpoint} with Authorization header
+→ proxy.py validates JWT but does NOT check subscription
+→ MCP tools can access all cloud resources without subscription ❌
+```
+**Auth**: AuthKit JWT via `CurrentUserProfileHybridJwtDep`
+**Subscription Check**: ❌ Missing
+**Fixed By**: Task 1.4 (protect `/proxy/*` endpoints)
+
+### Flow 4: CLI Auth (basic-memory) ❌ NEEDS FIX
+```
+User → bm cloud login
+→ AuthKit OAuth device flow
+→ JWT stored in ~/.basic-memory/tokens.json
+→ CLI calls:
+  - {cloud_host}/tenant/mount/info (for bisync setup)
+  - {cloud_host}/tenant/mount/credentials (for bisync credentials)
+  - {cloud_host}/proxy/{endpoint} (for all MCP tools)
+→ tenant_mount.py and proxy.py validate JWT but do NOT check subscription
+→ Access granted without subscription ❌
+```
+**Auth**: AuthKit JWT via `CurrentUserProfileHybridJwtDep`
+**Subscription Check**: ❌ Missing
+**Fixed By**: Task 1.3 (protect `/tenant/mount/*`) + Task 1.4 (protect `/proxy/*`)
+
+### Flow 5: Cloud CLI (Admin Tasks) ✅ SECURE
+```
+Admin → python -m basic_memory_cloud.cli.tenant_cli
+→ Uses CLIAuth with admin WorkOS OAuth client
+→ Gets JWT token with admin org membership
+→ Calls /tenants/* endpoints (create, list, delete tenants)
+→ tenants.py validates JWT AND admin org membership via AdminUserHybridDep
+→ Access granted only to admin organization members ✅
+```
+**Auth**: AuthKit JWT + Admin org validation via `AdminUserHybridDep`
+**Subscription Check**: N/A (admins bypass subscription requirement)
+**Status**: ✅ Secure - admin-only endpoints, separate from user flows
+
+### Flow 6: Direct API Calls ❌ NEEDS FIX
+```
+Any HTTP client → {cloud_host}/proxy/{endpoint}
+→ Sends Authorization: Bearer {jwt} header
+→ proxy.py validates JWT but does NOT check subscription
+→ Direct API access without subscription ❌
+```
+**Auth**: WorkOS or AuthKit JWT via `CurrentUserProfileHybridJwtDep`
+**Subscription Check**: ❌ Missing
+**Fixed By**: Task 1.4 (protect `/proxy/*` endpoints)
+
+### Flow 7: Tenant API Instance (Internal) ✅ SECURE
+```
+/proxy/* → Tenant API (basic-memory-{tenant_id}.fly.dev)
+→ Validates signed header from proxy (tenant_id + signature)
+→ Direct external access will be disabled in production
+→ Only accessible via /proxy endpoints
+```
+**Auth**: Signed header validation from proxy
+**Subscription Check**: N/A (internal only, validated at proxy layer)
+**Status**: ✅ Secure - validates proxy signature, not directly accessible
+
+### Authentication Flow Summary Matrix
+
+| Flow | Access Method | Current Auth | Subscription Check | Fixed By SPEC-13 |
+|------|---------------|--------------|-------------------|------------------|
+| 1. Polar Webhook | Polar webhook → `/api/webhooks/polar` | Polar signature | N/A (webhook) | N/A |
+| 2. Web App | Browser → `/proxy/*` | WorkOS JWT ✅ | ❌ Missing | ✅ Task 1.4 |
+| 3. MCP | AI Agent → `/proxy/*` | AuthKit JWT ✅ | ❌ Missing | ✅ Task 1.4 |
+| 4. CLI | `bm cloud` → `/tenant/mount/*` + `/proxy/*` | AuthKit JWT ✅ | ❌ Missing | ✅ Task 1.3 + 1.4 |
+| 5. Cloud CLI (Admin) | `tenant_cli` → `/tenants/*` | AuthKit JWT ✅ + Admin org | N/A (admin) | N/A (admin bypass) |
+| 6. Direct API | HTTP client → `/proxy/*` | WorkOS/AuthKit JWT ✅ | ❌ Missing | ✅ Task 1.4 |
+| 7. Tenant API | Proxy → tenant instance | Proxy signature ✅ | N/A (internal) | N/A |
+
+### Key Insights
+
+1. **Single Point of Failure**: All user access (Web, MCP, CLI, Direct API) converges on `/proxy/*` endpoints
+2. **Centralized Fix**: Protecting `/proxy/*` with subscription validation closes gaps in flows 2, 3, 4, and 6 simultaneously
+3. **Admin Bypass**: Cloud CLI admin tasks use separate `/tenants/*` endpoints with admin-only access (no subscription needed)
+4. **Defense in Depth**: `/tenant/mount/*` endpoints also protected for CLI bisync operations
+
+### Architecture Benefits
+
+The `/proxy` layer serves as the **single centralized authorization point** for all user access:
+- ✅ One place to validate JWT tokens
+- ✅ One place to check subscription status
+- ✅ One place to handle tenant routing
+- ✅ Protects Web App, MCP, CLI, and Direct API simultaneously
+
+This architecture makes the fix comprehensive and maintainable.
+
+## How (High Level)
+
+### Option A: Database Subscription Check (Recommended)
+
+**Approach**: Add FastAPI dependency that validates subscription status from database before allowing access.
+
+**Implementation**:
+
+1. **Create Subscription Validation Dependency** (`deps.py`)
+   ```python
+   async def get_authorized_cli_user_profile(
+       credentials: Annotated[HTTPAuthorizationCredentials, Depends(security)],
+       session: DatabaseSessionDep,
+       user_profile_repo: UserProfileRepositoryDep,
+       subscription_service: SubscriptionServiceDep,
+   ) -> UserProfile:
+       """
+       Hybrid authentication with subscription validation for CLI access.
+
+       Validates JWT (WorkOS or AuthKit) and checks for active subscription.
+       Returns UserProfile if both checks pass.
+       """
+       # Try WorkOS JWT first (faster validation path)
+       try:
+           user_context = await validate_workos_jwt(credentials.credentials)
+       except HTTPException:
+           # Fall back to AuthKit JWT validation
+           try:
+               user_context = await validate_authkit_jwt(credentials.credentials)
+           except HTTPException as e:
+               raise HTTPException(
+                   status_code=401,
+                   detail="Invalid JWT token. Authentication required.",
+               ) from e
+
+       # Check subscription status
+       has_subscription = await subscription_service.check_user_has_active_subscription(
+           session, user_context.workos_user_id
+       )
+
+       if not has_subscription:
+           raise HTTPException(
+               status_code=403,
+               detail={
+                   "error": "subscription_required",
+                   "message": "Active subscription required for CLI access",
+                   "subscribe_url": "https://basicmemory.com/subscribe"
+               }
+           )
+
+       # Look up and return user profile
+       user_profile = await user_profile_repo.get_user_profile_by_workos_user_id(
+           session, user_context.workos_user_id
+       )
+       if not user_profile:
+           raise HTTPException(401, detail="User profile not found")
+
+       return user_profile
+   ```
+
+   ```python
+   AuthorizedCLIUserProfileDep = Annotated[UserProfile, Depends(get_authorized_cli_user_profile)]
+   ```
+
+2. **Add Subscription Check Method** (`subscription_service.py`)
+   ```python
+   async def check_user_has_active_subscription(
+       self, session: AsyncSession, workos_user_id: str
+   ) -> bool:
+       """Check if user has active subscription."""
+       # Use existing repository method to get subscription by workos_user_id
+       # This joins UserProfile -> Subscription in a single query
+       subscription = await self.subscription_repository.get_subscription_by_workos_user_id(
+           session, workos_user_id
+       )
+
+       return subscription is not None and subscription.status == "active"
+   ```
+
+3. **Protect Endpoints** (Replace `CurrentUserProfileHybridJwtDep` with `AuthorizedCLIUserProfileDep`)
+   ```python
+   # Before
+   @router.get("/mount/info")
+   async def get_mount_info(
+       user_profile: CurrentUserProfileHybridJwtDep,
+       session: DatabaseSessionDep,
+   ):
+       tenant_id = user_profile.tenant_id
+       ...
+
+   # After
+   @router.get("/mount/info")
+   async def get_mount_info(
+       user_profile: AuthorizedCLIUserProfileDep,  # Now includes subscription check
+       session: DatabaseSessionDep,
+   ):
+       tenant_id = user_profile.tenant_id  # No changes needed to endpoint logic
+       ...
+   ```
+
+4. **Update CLI Error Handling**
+   ```python
+   # In core_commands.py login()
+   try:
+       success = await auth.login()
+       if success:
+           # Test subscription by calling protected endpoint
+           await make_api_request("GET", f"{host_url}/tenant/mount/info")
+   except CloudAPIError as e:
+       if e.status_code == 403 and e.detail.get("error") == "subscription_required":
+           console.print("[red]Subscription required[/red]")
+           console.print(f"Subscribe at: {e.detail['subscribe_url']}")
+           raise typer.Exit(1)
+   ```
+
+**Pros**:
+- Simple to implement
+- Fast (single database query)
+- Clear error messages
+- Works with existing subscription flow
+
+**Cons**:
+- Database is source of truth (could get out of sync with Polar)
+- Adds one extra subscription lookup query per request (lightweight JOIN query)
+
+### Option B: WorkOS Organizations
+
+**Approach**: Add users to "beta-users" organization in WorkOS after subscription creation, validate org membership via JWT claims.
+
+**Implementation**:
+1. After Polar subscription webhook, add user to WorkOS org via API
+2. Validate `org_id` claim in JWT matches authorized org
+3. Use existing `get_admin_workos_jwt` pattern
+
+**Pros**:
+- WorkOS as single source of truth
+- No database queries needed
+- More secure (harder to bypass)
+
+**Cons**:
+- More complex (requires WorkOS API integration)
+- Requires managing WorkOS org membership
+- Less control over error messages
+- Additional API calls during registration
+
+### Recommendation
+
+**Start with Option A (Database Check)** for:
+- Faster implementation
+- Clearer error messages
+- Easier testing
+- Existing subscription infrastructure
+
+**Consider Option B later** if:
+- Need tighter security
+- Want to reduce database dependency
+- Scale requires fewer database queries
+
+## How to Evaluate
+
+### Success Criteria
+
+**1. Unauthorized Users Blocked**
+- [ ] User without subscription cannot complete `bm cloud login`
+- [ ] User without subscription receives clear error with subscribe link
+- [ ] User without subscription cannot run `bm cloud setup`
+- [ ] User without subscription cannot run `bm sync` in cloud mode
+
+**2. Authorized Users Work**
+- [ ] User with active subscription can login successfully
+- [ ] User with active subscription can setup bisync
+- [ ] User with active subscription can sync files
+- [ ] User with active subscription can use all MCP tools via proxy
+
+**3. Subscription State Changes**
+- [ ] Expired subscription blocks access with clear error
+- [ ] Renewed subscription immediately restores access
+- [ ] Cancelled subscription blocks access after grace period
+
+**4. Error Messages**
+- [ ] 403 errors include "subscription_required" error code
+- [ ] Error messages include subscribe URL
+- [ ] CLI displays user-friendly messages
+- [ ] Errors logged appropriately for debugging
+
+**5. No Regressions**
+- [ ] Web app login/subscription flow unaffected
+- [ ] Admin endpoints still work (bypass check)
+- [ ] Tenant provisioning workflow unchanged
+- [ ] Performance not degraded
+
+### Test Cases
+
+**Manual Testing**:
+```bash
+# Test 1: Unauthorized user
+1. Create new WorkOS account (no subscription)
+2. Run `bm cloud login`
+3. Verify: Login succeeds but shows subscription required error
+4. Verify: Cannot run `bm cloud setup`
+5. Verify: Clear error message with subscribe link
+
+# Test 2: Authorized user
+1. Use account with active Polar subscription
+2. Run `bm cloud login`
+3. Verify: Login succeeds without errors
+4. Run `bm cloud setup`
+5. Verify: Setup completes successfully
+6. Run `bm sync`
+7. Verify: Sync works normally
+
+# Test 3: Subscription expiration
+1. Use account with active subscription
+2. Manually expire subscription in database
+3. Run `bm cloud login`
+4. Verify: Blocked with clear error
+5. Renew subscription
+6. Run `bm cloud login` again
+7. Verify: Access restored
+```
+
+**Automated Tests**:
+```python
+# Test subscription validation dependency
+async def test_authorized_user_allowed(
+    db_session,
+    user_profile_repo,
+    subscription_service,
+    mock_jwt_credentials
+):
+    # Create user with active subscription
+    user_profile = await create_user_with_subscription(db_session, status="active")
+
+    # Mock JWT credentials for the user
+    credentials = mock_jwt_credentials(user_profile.workos_user_id)
+
+    # Should not raise exception
+    result = await get_authorized_cli_user_profile(
+        credentials, db_session, user_profile_repo, subscription_service
+    )
+    assert result.id == user_profile.id
+    assert result.workos_user_id == user_profile.workos_user_id
+
+async def test_unauthorized_user_blocked(
+    db_session,
+    user_profile_repo,
+    subscription_service,
+    mock_jwt_credentials
+):
+    # Create user without subscription
+    user_profile = await create_user_without_subscription(db_session)
+    credentials = mock_jwt_credentials(user_profile.workos_user_id)
+
+    # Should raise 403
+    with pytest.raises(HTTPException) as exc:
+        await get_authorized_cli_user_profile(
+            credentials, db_session, user_profile_repo, subscription_service
+        )
+
+    assert exc.value.status_code == 403
+    assert exc.value.detail["error"] == "subscription_required"
+
+async def test_inactive_subscription_blocked(
+    db_session,
+    user_profile_repo,
+    subscription_service,
+    mock_jwt_credentials
+):
+    # Create user with cancelled/inactive subscription
+    user_profile = await create_user_with_subscription(db_session, status="cancelled")
+    credentials = mock_jwt_credentials(user_profile.workos_user_id)
+
+    # Should raise 403
+    with pytest.raises(HTTPException) as exc:
+        await get_authorized_cli_user_profile(
+            credentials, db_session, user_profile_repo, subscription_service
+        )
+
+    assert exc.value.status_code == 403
+    assert exc.value.detail["error"] == "subscription_required"
+```
+
+## Implementation Tasks
+
+### Phase 1: Cloud Service (basic-memory-cloud)
+
+#### Task 1.1: Add subscription check method to SubscriptionService ✅
+**File**: `apps/cloud/src/basic_memory_cloud/services/subscription_service.py`
+
+- [x] Add method `check_subscription(session: AsyncSession, workos_user_id: str) -> bool`
+- [x] Use existing `self.subscription_repository.get_subscription_by_workos_user_id(session, workos_user_id)`
+- [x] Check both `status == "active"` AND `current_period_end >= now()`
+- [x] Log both values when check fails
+- [x] Add docstring explaining the method
+- [x] Run `just typecheck` to verify types
+
+**Actual implementation**:
+```python
+async def check_subscription(
+    self, session: AsyncSession, workos_user_id: str
+) -> bool:
+    """Check if user has active subscription with valid period."""
+    subscription = await self.subscription_repository.get_subscription_by_workos_user_id(
+        session, workos_user_id
+    )
+
+    if subscription is None:
+        return False
+
+    if subscription.status != "active":
+        logger.warning("Subscription inactive", workos_user_id=workos_user_id,
+                      status=subscription.status, current_period_end=subscription.current_period_end)
+        return False
+
+    now = datetime.now(timezone.utc)
+    if subscription.current_period_end is None or subscription.current_period_end < now:
+        logger.warning("Subscription expired", workos_user_id=workos_user_id,
+                      status=subscription.status, current_period_end=subscription.current_period_end)
+        return False
+
+    return True
+```
+
+#### Task 1.2: Add subscription validation dependency ✅
+**File**: `apps/cloud/src/basic_memory_cloud/deps.py`
+
+- [x] Import necessary types at top of file (if not already present)
+- [x] Add `authorized_user_profile()` async function
+- [x] Implement hybrid JWT validation (WorkOS first, AuthKit fallback)
+- [x] Add subscription check using `subscription_service.check_subscription()`
+- [x] Raise `HTTPException(403)` with structured error detail if no active subscription
+- [x] Look up and return `UserProfile` after validation
+- [x] Add `AuthorizedUserProfileDep` type annotation
+- [x] Use `settings.subscription_url` from config (env var)
+- [x] Run `just typecheck` to verify types
+
+**Expected code**:
+```python
+async def get_authorized_cli_user_profile(
+    credentials: Annotated[HTTPAuthorizationCredentials, Depends(security)],
+    session: DatabaseSessionDep,
+    user_profile_repo: UserProfileRepositoryDep,
+    subscription_service: SubscriptionServiceDep,
+) -> UserProfile:
+    """
+    Hybrid authentication with subscription validation for CLI access.
+
+    Validates JWT (WorkOS or AuthKit) and checks for active subscription.
+    Returns UserProfile if both checks pass.
+
+    Raises:
+        HTTPException(401): Invalid JWT token
+        HTTPException(403): No active subscription
+    """
+    # Try WorkOS JWT first (faster validation path)
+    try:
+        user_context = await validate_workos_jwt(credentials.credentials)
+    except HTTPException:
+        # Fall back to AuthKit JWT validation
+        try:
+            user_context = await validate_authkit_jwt(credentials.credentials)
+        except HTTPException as e:
+            raise HTTPException(
+                status_code=401,
+                detail="Invalid JWT token. Authentication required.",
+            ) from e
+
+    # Check subscription status
+    has_subscription = await subscription_service.check_user_has_active_subscription(
+        session, user_context.workos_user_id
+    )
+
+    if not has_subscription:
+        logger.warning(
+            "CLI access denied: no active subscription",
+            workos_user_id=user_context.workos_user_id,
+        )
+        raise HTTPException(
+            status_code=403,
+            detail={
+                "error": "subscription_required",
+                "message": "Active subscription required for CLI access",
+                "subscribe_url": "https://basicmemory.com/subscribe"
+            }
+        )
+
+    # Look up and return user profile
+    user_profile = await user_profile_repo.get_user_profile_by_workos_user_id(
+        session, user_context.workos_user_id
+    )
+    if not user_profile:
+        logger.error(
+            "User profile not found after successful auth",
+            workos_user_id=user_context.workos_user_id,
+        )
+        raise HTTPException(401, detail="User profile not found")
+
+    logger.info(
+        "CLI access granted",
+        workos_user_id=user_context.workos_user_id,
+        user_profile_id=str(user_profile.id),
+    )
+    return user_profile
+
+
+AuthorizedCLIUserProfileDep = Annotated[UserProfile, Depends(get_authorized_cli_user_profile)]
+```
+
+#### Task 1.3: Protect tenant mount endpoints ✅
+**File**: `apps/cloud/src/basic_memory_cloud/api/tenant_mount.py`
+
+- [x] Update import: add `AuthorizedUserProfileDep` from `..deps`
+- [x] Replace `user_profile: CurrentUserProfileHybridJwtDep` with `user_profile: AuthorizedUserProfileDep` in:
+  - [x] `get_tenant_mount_info()` (line ~23)
+  - [x] `create_tenant_mount_credentials()` (line ~88)
+  - [x] `revoke_tenant_mount_credentials()` (line ~244)
+  - [x] `list_tenant_mount_credentials()` (line ~326)
+- [x] Verify no other code changes needed (parameter name and usage stays the same)
+- [x] Run `just typecheck` to verify types
+
+#### Task 1.4: Protect proxy endpoints ✅
+**File**: `apps/cloud/src/basic_memory_cloud/api/proxy.py`
+
+- [x] Update import: add `AuthorizedUserProfileDep` from `..deps`
+- [x] Replace `user_profile: CurrentUserProfileHybridJwtDep` with `user_profile: AuthorizedUserProfileDep` in:
+  - [x] `check_tenant_health()` (line ~21)
+  - [x] `proxy_to_tenant()` (line ~63)
+- [x] Verify no other code changes needed (parameter name and usage stays the same)
+- [x] Run `just typecheck` to verify types
+
+**Why Keep /proxy Architecture:**
+
+The proxy layer is valuable because it:
+1. **Centralizes authorization** - Single place for JWT + subscription validation (closes both CLI and MCP auth gaps)
+2. **Handles tenant routing** - Maps tenant_id → fly_app_name without exposing infrastructure details
+3. **Abstracts infrastructure** - MCP and CLI don't need to know about Fly.io naming conventions
+4. **Enables features** - Can add rate limiting, caching, request logging, etc. at proxy layer
+5. **Supports both flows** - CLI tools and MCP tools both use /proxy endpoints
+
+The extra HTTP hop is minimal (< 10ms) and worth it for architectural benefits.
+
+**Performance Note:** Cloud app has Redis available - can cache subscription status to reduce database queries if needed. Initial implementation uses direct database query (simple, acceptable performance ~5-10ms).
+
+#### Task 1.5: Add unit tests for subscription service
+**File**: `apps/cloud/tests/services/test_subscription_service.py` (create if doesn't exist)
+
+- [ ] Create test file if it doesn't exist
+- [ ] Add test: `test_check_user_has_active_subscription_returns_true_for_active()`
+  - Create user with active subscription
+  - Call `check_user_has_active_subscription()`
+  - Assert returns `True`
+- [ ] Add test: `test_check_user_has_active_subscription_returns_false_for_pending()`
+  - Create user with pending subscription
+  - Assert returns `False`
+- [ ] Add test: `test_check_user_has_active_subscription_returns_false_for_cancelled()`
+  - Create user with cancelled subscription
+  - Assert returns `False`
+- [ ] Add test: `test_check_user_has_active_subscription_returns_false_for_no_subscription()`
+  - Create user without subscription
+  - Assert returns `False`
+- [ ] Run `just test` to verify tests pass
+
+#### Task 1.6: Add integration tests for dependency
+**File**: `apps/cloud/tests/test_deps.py` (create if doesn't exist)
+
+- [ ] Create test file if it doesn't exist
+- [ ] Add fixtures for mocking JWT credentials
+- [ ] Add test: `test_authorized_cli_user_profile_with_active_subscription()`
+  - Mock valid JWT + active subscription
+  - Call dependency
+  - Assert returns UserProfile
+- [ ] Add test: `test_authorized_cli_user_profile_without_subscription_raises_403()`
+  - Mock valid JWT + no subscription
+  - Assert raises HTTPException(403) with correct error detail
+- [ ] Add test: `test_authorized_cli_user_profile_with_inactive_subscription_raises_403()`
+  - Mock valid JWT + cancelled subscription
+  - Assert raises HTTPException(403)
+- [ ] Add test: `test_authorized_cli_user_profile_with_invalid_jwt_raises_401()`
+  - Mock invalid JWT
+  - Assert raises HTTPException(401)
+- [ ] Run `just test` to verify tests pass
+
+#### Task 1.7: Deploy and verify cloud service
+- [ ] Run `just check` to verify all quality checks pass
+- [ ] Commit changes with message: "feat: add subscription validation to CLI endpoints"
+- [ ] Deploy to preview environment: `flyctl deploy --config apps/cloud/fly.toml`
+- [ ] Test manually:
+  - [ ] Call `/tenant/mount/info` with valid JWT but no subscription → expect 403
+  - [ ] Call `/tenant/mount/info` with valid JWT and active subscription → expect 200
+  - [ ] Verify error response structure matches spec
+
+### Phase 2: CLI (basic-memory)
+
+#### Task 2.1: Review and understand CLI authentication flow
+**Files**: `src/basic_memory/cli/commands/cloud/`
+
+- [ ] Read `core_commands.py` to understand current login flow
+- [ ] Read `api_client.py` to understand current error handling
+- [ ] Identify where 403 errors should be caught
+- [ ] Identify what error messages should be displayed
+- [ ] Document current behavior in spec if needed
+
+#### Task 2.2: Update API client error handling
+**File**: `src/basic_memory/cli/commands/cloud/api_client.py`
+
+- [ ] Add custom exception class `SubscriptionRequiredError` (or similar)
+- [ ] Update HTTP error handling to parse 403 responses
+- [ ] Extract `error`, `message`, and `subscribe_url` from error detail
+- [ ] Raise specific exception for subscription_required errors
+- [ ] Run `just typecheck` in basic-memory repo to verify types
+
+#### Task 2.3: Update CLI login command error handling
+**File**: `src/basic_memory/cli/commands/cloud/core_commands.py`
+
+- [ ] Import the subscription error exception
+- [ ] Wrap login flow with try/except for subscription errors
+- [ ] Display user-friendly error message with rich console
+- [ ] Show subscribe URL prominently
+- [ ] Provide actionable next steps
+- [ ] Run `just typecheck` to verify types
+
+**Expected error handling**:
+```python
+try:
+    # Existing login logic
+    success = await auth.login()
+    if success:
+        # Test access to protected endpoint
+        await api_client.test_connection()
+except SubscriptionRequiredError as e:
+    console.print("\n[red]✗ Subscription Required[/red]\n")
+    console.print(f"[yellow]{e.message}[/yellow]\n")
+    console.print(f"Subscribe at: [blue underline]{e.subscribe_url}[/blue underline]\n")
+    console.print("[dim]Once you have an active subscription, run [bold]bm cloud login[/bold] again.[/dim]")
+    raise typer.Exit(1)
+```
+
+#### Task 2.4: Update CLI tests
+**File**: `tests/cli/test_cloud_commands.py`
+
+- [ ] Add test: `test_login_without_subscription_shows_error()`
+  - Mock 403 subscription_required response
+  - Call login command
+  - Assert error message displayed
+  - Assert subscribe URL shown
+- [ ] Add test: `test_login_with_subscription_succeeds()`
+  - Mock successful authentication + subscription check
+  - Call login command
+  - Assert success message
+- [ ] Run `just test` to verify tests pass
+
+#### Task 2.5: Update CLI documentation
+**File**: `docs/cloud-cli.md` (in basic-memory-docs repo)
+
+- [ ] Add "Prerequisites" section if not present
+- [ ] Document subscription requirement
+- [ ] Add "Troubleshooting" section
+- [ ] Document "Subscription Required" error
+- [ ] Provide subscribe URL
+- [ ] Add FAQ entry about subscription errors
+- [ ] Build docs locally to verify formatting
+
+### Phase 3: End-to-End Testing
+
+#### Task 3.1: Create test user accounts
+**Prerequisites**: Access to WorkOS admin and database
+
+- [ ] Create test user WITHOUT subscription:
+  - [ ] Sign up via WorkOS AuthKit
+  - [ ] Get workos_user_id from database
+  - [ ] Verify no subscription record exists
+  - [ ] Save credentials for testing
+- [ ] Create test user WITH active subscription:
+  - [ ] Sign up via WorkOS AuthKit
+  - [ ] Create subscription via Polar or dev endpoint
+  - [ ] Verify subscription.status = "active" in database
+  - [ ] Save credentials for testing
+
+#### Task 3.2: Manual testing - User without subscription
+**Environment**: Preview/staging deployment
+
+- [ ] Run `bm cloud login` with no-subscription user
+- [ ] Verify: Login shows "Subscription Required" error
+- [ ] Verify: Subscribe URL is displayed
+- [ ] Verify: Cannot run `bm cloud setup`
+- [ ] Verify: Cannot call `/tenant/mount/info` directly via curl
+- [ ] Document any issues found
+
+#### Task 3.3: Manual testing - User with active subscription
+**Environment**: Preview/staging deployment
+
+- [ ] Run `bm cloud login` with active-subscription user
+- [ ] Verify: Login succeeds without errors
+- [ ] Verify: Can run `bm cloud setup`
+- [ ] Verify: Can call `/tenant/mount/info` successfully
+- [ ] Verify: Can call `/proxy/*` endpoints successfully
+- [ ] Document any issues found
+
+#### Task 3.4: Test subscription state transitions
+**Environment**: Preview/staging deployment + database access
+
+- [ ] Start with active subscription user
+- [ ] Verify: All operations work
+- [ ] Update subscription.status to "cancelled" in database
+- [ ] Verify: Login now shows "Subscription Required" error
+- [ ] Verify: Existing tokens are rejected with 403
+- [ ] Update subscription.status back to "active"
+- [ ] Verify: Access restored immediately
+- [ ] Document any issues found
+
+#### Task 3.5: Integration test suite
+**File**: `apps/cloud/tests/integration/test_cli_subscription_flow.py` (create if doesn't exist)
+
+- [ ] Create integration test file
+- [ ] Add test: `test_cli_flow_without_subscription()`
+  - Simulate full CLI flow without subscription
+  - Assert 403 at appropriate points
+- [ ] Add test: `test_cli_flow_with_active_subscription()`
+  - Simulate full CLI flow with active subscription
+  - Assert all operations succeed
+- [ ] Add test: `test_subscription_expiration_blocks_access()`
+  - Start with active subscription
+  - Change status to cancelled
+  - Assert access denied
+- [ ] Run tests in CI/CD pipeline
+- [ ] Document test coverage
+
+#### Task 3.6: Load/performance testing (optional)
+**Environment**: Staging environment
+
+- [ ] Test subscription check performance under load
+- [ ] Measure latency added by subscription check
+- [ ] Verify database query performance
+- [ ] Document any performance concerns
+- [ ] Optimize if needed
+
+## Implementation Summary Checklist
+
+Use this high-level checklist to track overall progress:
+
+### Phase 1: Cloud Service 🔄
+- [x] Add subscription check method to SubscriptionService
+- [x] Add subscription validation dependency to deps.py
+- [x] Add subscription_url config (env var)
+- [x] Protect tenant mount endpoints (4 endpoints)
+- [x] Protect proxy endpoints (2 endpoints)
+- [ ] Add unit tests for subscription service
+- [ ] Add integration tests for dependency
+- [ ] Deploy and verify cloud service
+
+### Phase 2: CLI Updates 🔄
+- [ ] Review CLI authentication flow
+- [ ] Update API client error handling
+- [ ] Update CLI login command error handling
+- [ ] Add CLI tests
+- [ ] Update CLI documentation
+
+### Phase 3: End-to-End Testing 🧪
+- [ ] Create test user accounts
+- [ ] Manual testing - user without subscription
+- [ ] Manual testing - user with active subscription
+- [ ] Test subscription state transitions
+- [ ] Integration test suite
+- [ ] Load/performance testing (optional)
+
+## Questions to Resolve
+
+### Resolved ✅
+
+1. **Admin Access**
+   - ✅ **Decision**: Admin users bypass subscription check
+   - **Rationale**: Admin endpoints already use `AdminUserHybridDep`, which is separate from CLI user endpoints
+   - **Implementation**: No changes needed to admin endpoints
+
+2. **Subscription Check Implementation**
+   - ✅ **Decision**: Use Option A (Database Check)
+   - **Rationale**: Simpler, faster to implement, works with existing infrastructure
+   - **Implementation**: Single JOIN query via `get_subscription_by_workos_user_id()`
+
+3. **Dependency Return Type**
+   - ✅ **Decision**: Return `UserProfile` (not `UserContext`)
+   - **Rationale**: Drop-in compatibility with existing endpoints, no refactoring needed
+   - **Implementation**: `AuthorizedCLIUserProfileDep` returns `UserProfile`
+
+### To Be Resolved ⏳
+
+1. **Subscription Check Frequency**
+   - **Options**:
+     - Check on every API call (slower, more secure) ✅ **RECOMMENDED**
+     - Cache subscription status (faster, risk of stale data)
+     - Check only on login/setup (fast, but allows expired subscriptions temporarily)
+   - **Recommendation**: Check on every call via dependency injection (simple, secure, acceptable performance)
+   - **Impact**: ~5-10ms per request (single indexed JOIN query)
+
+2. **Grace Period**
+   - **Options**:
+     - No grace period - immediate block when status != "active" ✅ **RECOMMENDED**
+     - 7-day grace period after period_end
+     - 14-day grace period after period_end
+   - **Recommendation**: No grace period initially, add later if needed based on customer feedback
+   - **Implementation**: Check `subscription.status == "active"` only (ignore period_end initially)
+
+3. **Subscription Expiration Handling**
+   - **Question**: Should we check `current_period_end < now()` in addition to `status == "active"`?
+   - **Options**:
+     - Only check status field (rely on Polar webhooks to update status) ✅ **RECOMMENDED**
+     - Check both status and current_period_end (more defensive)
+   - **Recommendation**: Only check status field, assume Polar webhooks keep it current
+   - **Risk**: If webhooks fail, expired subscriptions might retain access until webhook succeeds
+
+4. **Subscribe URL**
+   - **Question**: What's the actual subscription URL?
+   - **Current**: Spec uses `https://basicmemory.com/subscribe`
+   - **Action Required**: Verify correct URL before implementation
+
+5. **Dev Mode / Testing Bypass**
+   - **Question**: Support bypass for development/testing?
+   - **Options**:
+     - Environment variable: `DISABLE_SUBSCRIPTION_CHECK=true`
+     - Always enforce (more realistic testing) ✅ **RECOMMENDED**
+   - **Recommendation**: No bypass - use test users with real subscriptions for realistic testing
+   - **Implementation**: Create dev endpoint to activate subscriptions for testing
+
+## Related Specs
+
+- SPEC-9: Multi-Project Bidirectional Sync Architecture (CLI affected by this change)
+- SPEC-8: TigrisFS Integration (Mount endpoints protected)
+
+## Notes
+
+- This spec prioritizes security over convenience - better to block unauthorized access than risk revenue loss
+- Clear error messages are critical - users should understand why they're blocked and how to resolve it
+- Consider adding telemetry to track subscription_required errors for monitoring signup conversion

specs/SPEC-14 Cloud Git Versioning & GitHub Backup.md

@@ -0,0 +1,210 @@
+---
+title: 'SPEC-14: Cloud Git Versioning & GitHub Backup'
+type: spec
+permalink: specs/spec-14-cloud-git-versioning
+tags:
+- git
+- github
+- backup
+- versioning
+- cloud
+related:
+- specs/spec-9-multi-project-bisync
+- specs/spec-9-follow-ups-conflict-sync-and-observability
+status: deferred
+---
+
+# SPEC-14: Cloud Git Versioning & GitHub Backup
+
+**Status: DEFERRED** - Postponed until multi-user/teams feature development. Using S3 versioning (SPEC-9.1) for v1 instead.
+
+## Why Deferred
+
+**Original goals can be met with simpler solutions:**
+- Version history → **S3 bucket versioning** (automatic, zero config)
+- Offsite backup → **Tigris global replication** (built-in)
+- Restore capability → **S3 version restore** (`bm cloud restore --version-id`)
+- Collaboration → **Deferred to teams/multi-user feature** (not v1 requirement)
+
+**Complexity vs value trade-off:**
+- Git integration adds: committer service, puller service, webhooks, LFS, merge conflicts
+- Risk: Loop detection between Git ↔ rclone bisync ↔ local edits
+- S3 versioning gives 80% of value with 5% of complexity
+
+**When to revisit:**
+- Teams/multi-user features (PR-based collaboration workflow)
+- User requests for commit messages and branch-based workflows
+- Need for fine-grained audit trail beyond S3 object metadata
+
+---
+
+## Original Specification (for reference)
+
+## Why
+Early access users want **transparent version history**, easy **offsite backup**, and a familiar **restore/branching** workflow. Git/GitHub integration would provide:
+- Auditable history of every change (who/when/why)
+- Branches/PRs for review and collaboration
+- Offsite private backup under the user's control
+- Escape hatch: users can always `git clone` their knowledge base
+
+**Note:** These goals are now addressed via S3 versioning (SPEC-9.1) for single-user use case.
+
+## Goals
+- **Transparent**: Users keep using Basic Memory; Git runs behind the scenes.
+- **Private**: Push to a **private GitHub repo** that the user owns (or tenant org).
+- **Reliable**: No data loss, deterministic mapping of filesystem ↔ Git.
+- **Composable**: Plays nicely with SPEC‑9 bisync and upcoming conflict features (SPEC‑9 Follow‑Ups).
+
+**Non‑Goals (for v1):**
+- Fine‑grained per‑file encryption in Git history (can be layered later).
+- Large media optimization beyond Git LFS defaults.
+
+## User Stories
+1. *As a user*, I connect my GitHub and choose a private backup repo.
+2. *As a user*, every change I make in cloud (or via bisync) is **committed** and **pushed** automatically.
+3. *As a user*, I can **restore** a file/folder/project to a prior version.
+4. *As a power user*, I can **git pull/push** directly to collaborate outside the app.
+5. *As an admin*, I can enforce repo ownership (tenant org) and least‑privilege scopes.
+
+## Scope
+- **In scope:** Full repo backup of `/app/data/` (all projects) with optional selective subpaths.
+- **Out of scope (v1):** Partial shallow mirrors; encrypted Git; cross‑provider SCM (GitLab/Bitbucket).
+
+## Architecture
+### Topology
+- **Authoritative working tree**: `/app/data/` (bucket mount) remains the source of truth (SPEC‑9).
+- **Bare repo** lives alongside: `/app/git/${tenant}/knowledge.git` (server‑side).
+- **Mirror remote**: `github.com/<owner>/<repo>.git` (private).
+
+```mermaid
+flowchart LR
+  A[/Users & Agents/] -->|writes/edits| B[/app/data/]
+  B -->|file events| C[Committer Service]
+  C -->|git commit| D[(Bare Repo)]
+  D -->|push| E[(GitHub Private Repo)]
+  E -->|webhook (push)| F[Puller Service]
+  F -->|git pull/merge| D
+  D -->|checkout/merge| B
+```
+
+### Services
+- **Committer Service** (daemon):
+  - Watches `/app/data/` for changes (inotify/poll)
+  - Batches changes (debounce e.g. 2–5s)
+  - Writes `.bmmeta` (if present) into commit message trailer (see Follow‑Ups)
+  - `git add -A && git commit -m "chore(sync): <summary>
+
+BM-Meta: <json>"`
+  - Periodic `git push` to GitHub mirror (configurable interval)
+- **Puller Service** (webhook target):
+  - Receives GitHub webhook (push) → `git fetch`
+  - **Fast‑forward** merges to `main` only; reject non‑FF unless policy allows
+  - Applies changes back to `/app/data/` via clean checkout
+  - Emits sync events for Basic Memory indexers
+
+### Auth & Security
+- **GitHub App** (recommended): minimal scopes: `contents:read/write`, `metadata:read`, webhook.
+- Tenant‑scoped installation; repo created in user account or tenant org.
+- Tokens stored in KMS/secret manager; rotated automatically.
+- Optional policy: allow only **FF merges** on `main`; non‑FF requires PR.
+
+### Repo Layout
+- **Monorepo** (default): one repo per tenant mirrors `/app/data/` with subfolders per project.
+- Optional multi‑repo mode (later): one repo per project.
+
+### File Handling
+- Honor `.gitignore` generated from `.bmignore.rclone` + BM defaults (cache, temp, state).
+- **Git LFS** for large binaries (images, media) — auto track by extension/size threshold.
+- Normalize newline + Unicode (aligns with Follow‑Ups).
+
+### Conflict Model
+- **Primary concurrency**: SPEC‑9 Follow‑Ups (`.bmmeta`, conflict copies) stays the first line of defense.
+- **Git merges** are a **secondary** mechanism:
+  - Server only auto‑merges **text** conflicts when trivial (FF or clean 3‑way).
+  - Otherwise, create `name (conflict from <branch>, <ts>).md` and surface via events.
+
+### Data Flow vs Bisync
+- Bisync (rclone) continues between local sync dir ↔ bucket.
+- Git sits **cloud‑side** between bucket and GitHub.
+- On **pull** from GitHub → files written to `/app/data/` → picked up by indexers & eventually by bisync back to users.
+
+## CLI & UX
+New commands (cloud mode):
+- `bm cloud git connect` — Launch GitHub App installation; create private repo; store installation id.
+- `bm cloud git status` — Show connected repo, last push time, last webhook delivery, pending commits.
+- `bm cloud git push` — Manual push (rarely needed).
+- `bm cloud git pull` — Manual pull/FF (admin only by default).
+- `bm cloud snapshot -m "message"` — Create a tagged point‑in‑time snapshot (git tag).
+- `bm restore <path> --to <commit|tag>` — Restore file/folder/project to prior version.
+
+Settings:
+- `bm config set git.autoPushInterval=5s`
+- `bm config set git.lfs.sizeThreshold=10MB`
+- `bm config set git.allowNonFF=false`
+
+## Migration & Backfill
+- On connect, if repo empty: initial commit of entire `/app/data/`.
+- If repo has content: require **one‑time import** path (clone to staging, reconcile, choose direction).
+
+## Edge Cases
+- Massive deletes: gated by SPEC‑9 `max_delete` **and** Git pre‑push hook checks.
+- Case changes and rename detection: rely on git rename heuristics + Follow‑Ups move hints.
+- Secrets: default ignore common secret patterns; allow custom deny list.
+
+## Telemetry & Observability
+- Emit `git_commit`, `git_push`, `git_pull`, `git_conflict` events with correlation IDs.
+- `bm sync --report` extended with Git stats (commit count, delta bytes, push latency).
+
+## Phased Plan
+### Phase 0 — Prototype (1 sprint)
+- Server: bare repo init + simple committer (batch every 10s) + manual GitHub token.
+- CLI: `bm cloud git connect --token <PAT>` (dev‑only)
+- Success: edits in `/app/data/` appear in GitHub within 30s.
+
+### Phase 1 — GitHub App & Webhooks (1–2 sprints)
+- Switch to GitHub App installs; create private repo; store installation id.
+- Committer hardened (debounce 2–5s, backoff, retries).
+- Puller service with webhook → FF merge → checkout to `/app/data/`.
+- LFS auto‑track + `.gitignore` generation.
+- CLI surfaces status + logs.
+
+### Phase 2 — Restore & Snapshots (1 sprint)
+- `bm restore` for file/folder/project with dry‑run.
+- `bm cloud snapshot` tags + list/inspect.
+- Policy: PR‑only non‑FF, admin override.
+
+### Phase 3 — Selective & Multi‑Repo (nice‑to‑have)
+- Include/exclude projects; optional per‑project repos.
+- Advanced policies (branch protections, required reviews).
+
+## Acceptance Criteria
+- Changes to `/app/data/` are committed and pushed automatically within configurable interval (default ≤5s).
+- GitHub webhook pull results in updated files in `/app/data/` (FF‑only by default).
+- LFS configured and functioning; large files don't bloat history.
+- `bm cloud git status` shows connected repo and last push/pull times.
+- `bm restore` restores a file/folder to a prior commit with a clear audit trail.
+- End‑to‑end works alongside SPEC‑9 bisync without loops or data loss.
+
+## Risks & Mitigations
+- **Loop risk (Git ↔ Bisync)**: Writes to `/app/data/` → bisync → local → user edits → back again. *Mitigation*: Debounce, commit squashing, idempotent `.bmmeta` versioning, and watch exclusion windows during pull.
+- **Repo bloat**: Lots of binary churn. *Mitigation*: default LFS, size threshold, optional media‑only repo later.
+- **Security**: Token leakage. *Mitigation*: GitHub App with short‑lived tokens, KMS storage, scoped permissions.
+- **Merge complexity**: Non‑trivial conflicts. *Mitigation*: prefer FF; otherwise conflict copies + events; require PR for non‑FF.
+
+## Open Questions
+- Do we default to **monorepo** per tenant, or offer project‑per‑repo at connect time?
+- Should `restore` write to a branch and open a PR, or directly modify `main`?
+- How do we expose Git history in UI (timeline view) without users dropping to CLI?
+
+## Appendix: Sample Config
+```json
+{
+  "git": {
+    "enabled": true,
+    "repo": "https://github.com/<owner>/<repo>.git",
+    "autoPushInterval": "5s",
+    "allowNonFF": false,
+    "lfs": { "sizeThreshold": 10485760 }
+  }
+}
+```

specs/SPEC-14- Cloud Git Versioning & GitHub Backup.md

@@ -0,0 +1,210 @@
+---
+title: 'SPEC-14: Cloud Git Versioning & GitHub Backup'
+type: spec
+permalink: specs/spec-14-cloud-git-versioning
+tags:
+- git
+- github
+- backup
+- versioning
+- cloud
+related:
+- specs/spec-9-multi-project-bisync
+- specs/spec-9-follow-ups-conflict-sync-and-observability
+status: deferred
+---
+
+# SPEC-14: Cloud Git Versioning & GitHub Backup
+
+**Status: DEFERRED** - Postponed until multi-user/teams feature development. Using S3 versioning (SPEC-9.1) for v1 instead.
+
+## Why Deferred
+
+**Original goals can be met with simpler solutions:**
+- Version history → **S3 bucket versioning** (automatic, zero config)
+- Offsite backup → **Tigris global replication** (built-in)
+- Restore capability → **S3 version restore** (`bm cloud restore --version-id`)
+- Collaboration → **Deferred to teams/multi-user feature** (not v1 requirement)
+
+**Complexity vs value trade-off:**
+- Git integration adds: committer service, puller service, webhooks, LFS, merge conflicts
+- Risk: Loop detection between Git ↔ rclone bisync ↔ local edits
+- S3 versioning gives 80% of value with 5% of complexity
+
+**When to revisit:**
+- Teams/multi-user features (PR-based collaboration workflow)
+- User requests for commit messages and branch-based workflows
+- Need for fine-grained audit trail beyond S3 object metadata
+
+---
+
+## Original Specification (for reference)
+
+## Why
+Early access users want **transparent version history**, easy **offsite backup**, and a familiar **restore/branching** workflow. Git/GitHub integration would provide:
+- Auditable history of every change (who/when/why)
+- Branches/PRs for review and collaboration
+- Offsite private backup under the user's control
+- Escape hatch: users can always `git clone` their knowledge base
+
+**Note:** These goals are now addressed via S3 versioning (SPEC-9.1) for single-user use case.
+
+## Goals
+- **Transparent**: Users keep using Basic Memory; Git runs behind the scenes.
+- **Private**: Push to a **private GitHub repo** that the user owns (or tenant org).
+- **Reliable**: No data loss, deterministic mapping of filesystem ↔ Git.
+- **Composable**: Plays nicely with SPEC‑9 bisync and upcoming conflict features (SPEC‑9 Follow‑Ups).
+
+**Non‑Goals (for v1):**
+- Fine‑grained per‑file encryption in Git history (can be layered later).
+- Large media optimization beyond Git LFS defaults.
+
+## User Stories
+1. *As a user*, I connect my GitHub and choose a private backup repo.
+2. *As a user*, every change I make in cloud (or via bisync) is **committed** and **pushed** automatically.
+3. *As a user*, I can **restore** a file/folder/project to a prior version.
+4. *As a power user*, I can **git pull/push** directly to collaborate outside the app.
+5. *As an admin*, I can enforce repo ownership (tenant org) and least‑privilege scopes.
+
+## Scope
+- **In scope:** Full repo backup of `/app/data/` (all projects) with optional selective subpaths.
+- **Out of scope (v1):** Partial shallow mirrors; encrypted Git; cross‑provider SCM (GitLab/Bitbucket).
+
+## Architecture
+### Topology
+- **Authoritative working tree**: `/app/data/` (bucket mount) remains the source of truth (SPEC‑9).
+- **Bare repo** lives alongside: `/app/git/${tenant}/knowledge.git` (server‑side).
+- **Mirror remote**: `github.com/<owner>/<repo>.git` (private).
+
+```mermaid
+flowchart LR
+  A[/Users & Agents/] -->|writes/edits| B[/app/data/]
+  B -->|file events| C[Committer Service]
+  C -->|git commit| D[(Bare Repo)]
+  D -->|push| E[(GitHub Private Repo)]
+  E -->|webhook (push)| F[Puller Service]
+  F -->|git pull/merge| D
+  D -->|checkout/merge| B
+```
+
+### Services
+- **Committer Service** (daemon):
+  - Watches `/app/data/` for changes (inotify/poll)
+  - Batches changes (debounce e.g. 2–5s)
+  - Writes `.bmmeta` (if present) into commit message trailer (see Follow‑Ups)
+  - `git add -A && git commit -m "chore(sync): <summary>
+
+BM-Meta: <json>"`
+  - Periodic `git push` to GitHub mirror (configurable interval)
+- **Puller Service** (webhook target):
+  - Receives GitHub webhook (push) → `git fetch`
+  - **Fast‑forward** merges to `main` only; reject non‑FF unless policy allows
+  - Applies changes back to `/app/data/` via clean checkout
+  - Emits sync events for Basic Memory indexers
+
+### Auth & Security
+- **GitHub App** (recommended): minimal scopes: `contents:read/write`, `metadata:read`, webhook.
+- Tenant‑scoped installation; repo created in user account or tenant org.
+- Tokens stored in KMS/secret manager; rotated automatically.
+- Optional policy: allow only **FF merges** on `main`; non‑FF requires PR.
+
+### Repo Layout
+- **Monorepo** (default): one repo per tenant mirrors `/app/data/` with subfolders per project.
+- Optional multi‑repo mode (later): one repo per project.
+
+### File Handling
+- Honor `.gitignore` generated from `.bmignore.rclone` + BM defaults (cache, temp, state).
+- **Git LFS** for large binaries (images, media) — auto track by extension/size threshold.
+- Normalize newline + Unicode (aligns with Follow‑Ups).
+
+### Conflict Model
+- **Primary concurrency**: SPEC‑9 Follow‑Ups (`.bmmeta`, conflict copies) stays the first line of defense.
+- **Git merges** are a **secondary** mechanism:
+  - Server only auto‑merges **text** conflicts when trivial (FF or clean 3‑way).
+  - Otherwise, create `name (conflict from <branch>, <ts>).md` and surface via events.
+
+### Data Flow vs Bisync
+- Bisync (rclone) continues between local sync dir ↔ bucket.
+- Git sits **cloud‑side** between bucket and GitHub.
+- On **pull** from GitHub → files written to `/app/data/` → picked up by indexers & eventually by bisync back to users.
+
+## CLI & UX
+New commands (cloud mode):
+- `bm cloud git connect` — Launch GitHub App installation; create private repo; store installation id.
+- `bm cloud git status` — Show connected repo, last push time, last webhook delivery, pending commits.
+- `bm cloud git push` — Manual push (rarely needed).
+- `bm cloud git pull` — Manual pull/FF (admin only by default).
+- `bm cloud snapshot -m "message"` — Create a tagged point‑in‑time snapshot (git tag).
+- `bm restore <path> --to <commit|tag>` — Restore file/folder/project to prior version.
+
+Settings:
+- `bm config set git.autoPushInterval=5s`
+- `bm config set git.lfs.sizeThreshold=10MB`
+- `bm config set git.allowNonFF=false`
+
+## Migration & Backfill
+- On connect, if repo empty: initial commit of entire `/app/data/`.
+- If repo has content: require **one‑time import** path (clone to staging, reconcile, choose direction).
+
+## Edge Cases
+- Massive deletes: gated by SPEC‑9 `max_delete` **and** Git pre‑push hook checks.
+- Case changes and rename detection: rely on git rename heuristics + Follow‑Ups move hints.
+- Secrets: default ignore common secret patterns; allow custom deny list.
+
+## Telemetry & Observability
+- Emit `git_commit`, `git_push`, `git_pull`, `git_conflict` events with correlation IDs.
+- `bm sync --report` extended with Git stats (commit count, delta bytes, push latency).
+
+## Phased Plan
+### Phase 0 — Prototype (1 sprint)
+- Server: bare repo init + simple committer (batch every 10s) + manual GitHub token.
+- CLI: `bm cloud git connect --token <PAT>` (dev‑only)
+- Success: edits in `/app/data/` appear in GitHub within 30s.
+
+### Phase 1 — GitHub App & Webhooks (1–2 sprints)
+- Switch to GitHub App installs; create private repo; store installation id.
+- Committer hardened (debounce 2–5s, backoff, retries).
+- Puller service with webhook → FF merge → checkout to `/app/data/`.
+- LFS auto‑track + `.gitignore` generation.
+- CLI surfaces status + logs.
+
+### Phase 2 — Restore & Snapshots (1 sprint)
+- `bm restore` for file/folder/project with dry‑run.
+- `bm cloud snapshot` tags + list/inspect.
+- Policy: PR‑only non‑FF, admin override.
+
+### Phase 3 — Selective & Multi‑Repo (nice‑to‑have)
+- Include/exclude projects; optional per‑project repos.
+- Advanced policies (branch protections, required reviews).
+
+## Acceptance Criteria
+- Changes to `/app/data/` are committed and pushed automatically within configurable interval (default ≤5s).
+- GitHub webhook pull results in updated files in `/app/data/` (FF‑only by default).
+- LFS configured and functioning; large files don't bloat history.
+- `bm cloud git status` shows connected repo and last push/pull times.
+- `bm restore` restores a file/folder to a prior commit with a clear audit trail.
+- End‑to‑end works alongside SPEC‑9 bisync without loops or data loss.
+
+## Risks & Mitigations
+- **Loop risk (Git ↔ Bisync)**: Writes to `/app/data/` → bisync → local → user edits → back again. *Mitigation*: Debounce, commit squashing, idempotent `.bmmeta` versioning, and watch exclusion windows during pull.
+- **Repo bloat**: Lots of binary churn. *Mitigation*: default LFS, size threshold, optional media‑only repo later.
+- **Security**: Token leakage. *Mitigation*: GitHub App with short‑lived tokens, KMS storage, scoped permissions.
+- **Merge complexity**: Non‑trivial conflicts. *Mitigation*: prefer FF; otherwise conflict copies + events; require PR for non‑FF.
+
+## Open Questions
+- Do we default to **monorepo** per tenant, or offer project‑per‑repo at connect time?
+- Should `restore` write to a branch and open a PR, or directly modify `main`?
+- How do we expose Git history in UI (timeline view) without users dropping to CLI?
+
+## Appendix: Sample Config
+```json
+{
+  "git": {
+    "enabled": true,
+    "repo": "https://github.com/<owner>/<repo>.git",
+    "autoPushInterval": "5s",
+    "allowNonFF": false,
+    "lfs": { "sizeThreshold": 10485760 }
+  }
+}
+```

specs/SPEC-15 Configuration Persistence via Tigris for Cloud Tenants.md

@@ -0,0 +1,273 @@
+---
+title: 'SPEC-15: Configuration Persistence via Tigris for Cloud Tenants'
+type: spec
+permalink: specs/spec-14-config-persistence-tigris
+tags:
+- persistence
+- tigris
+- multi-tenant
+- infrastructure
+- configuration
+status: draft
+---
+
+# SPEC-15: Configuration Persistence via Tigris for Cloud Tenants
+
+## Why
+
+We need to persist Basic Memory configuration across Fly.io deployments without using persistent volumes or external databases.
+
+**Current Problems:**
+- `~/.basic-memory/config.json` lost on every deployment (project configuration)
+- `~/.basic-memory/memory.db` lost on every deployment (search index)
+- Persistent volumes break clean deployment workflow
+- External databases (Turso) require per-tenant token management
+
+**The Insight:**
+The SQLite database is just an **index cache** of the markdown files. It can be rebuilt in seconds from the source markdown files in Tigris. Only the small `config.json` file needs true persistence.
+
+**Solution:**
+- Store `config.json` in Tigris bucket (persistent, small file)
+- Rebuild `memory.db` on startup from markdown files (fast, ephemeral)
+- No persistent volumes, no external databases, no token management
+
+## What
+
+Store Basic Memory configuration in the Tigris bucket and rebuild the database index on tenant machine startup.
+
+**Affected Components:**
+- `basic-memory/src/basic_memory/config.py` - Add configurable config directory
+
+**Architecture:**
+
+```bash
+# Tigris Bucket (persistent, mounted at /app/data)
+/app/data/
+  ├── .basic-memory/
+  │   └── config.json          # ← Project configuration (persistent, accessed via BASIC_MEMORY_CONFIG_DIR)
+  └── basic-memory/             # ← Markdown files (persistent, BASIC_MEMORY_HOME)
+      ├── project1/
+      └── project2/
+
+# Fly Machine (ephemeral)
+/app/.basic-memory/
+  └── memory.db                # ← Rebuilt on startup (fast local disk)
+```
+
+## How (High Level)
+
+### 1. Add Configurable Config Directory to Basic Memory
+
+Currently `ConfigManager` hardcodes `~/.basic-memory/config.json`. Add environment variable to override:
+
+```python
+# basic-memory/src/basic_memory/config.py
+
+class ConfigManager:
+    """Manages Basic Memory configuration."""
+
+    def __init__(self) -> None:
+        """Initialize the configuration manager."""
+        home = os.getenv("HOME", Path.home())
+        if isinstance(home, str):
+            home = Path(home)
+
+        # Allow override via environment variable
+        if config_dir := os.getenv("BASIC_MEMORY_CONFIG_DIR"):
+            self.config_dir = Path(config_dir)
+        else:
+            self.config_dir = home / DATA_DIR_NAME
+
+        self.config_file = self.config_dir / CONFIG_FILE_NAME
+
+        # Ensure config directory exists
+        self.config_dir.mkdir(parents=True, exist_ok=True)
+```
+
+### 2. Rebuild Database on Startup
+
+Basic Memory already has the sync functionality. Just ensure it runs on startup:
+
+```python
+# apps/api/src/basic_memory_cloud_api/main.py
+
+@app.on_event("startup")
+async def startup_sync():
+    """Rebuild database index from Tigris markdown files."""
+    logger.info("Starting database rebuild from Tigris")
+
+    # Initialize file sync (rebuilds index from markdown files)
+    app_config = ConfigManager().config
+    await initialize_file_sync(app_config)
+
+    logger.info("Database rebuild complete")
+```
+
+### 3. Environment Configuration
+
+```bash
+# Machine environment variables
+BASIC_MEMORY_CONFIG_DIR=/app/data/.basic-memory  # Config read/written directly to Tigris
+# memory.db stays in default location: /app/.basic-memory/memory.db (local ephemeral disk)
+```
+
+## Implementation Task List
+
+### Phase 1: Basic Memory Changes ✅
+- [x] Add `BASIC_MEMORY_CONFIG_DIR` environment variable support to `ConfigManager.__init__()`
+- [x] Test config loading from custom directory
+- [x] Update tests to verify custom config dir works
+
+### Phase 2: Tigris Bucket Structure ✅
+- [x] Ensure `.basic-memory/` directory exists in Tigris bucket on tenant creation
+  - ✅ ConfigManager auto-creates on first run, no explicit provisioning needed
+- [x] Initialize `config.json` in Tigris on first tenant deployment
+  - ✅ ConfigManager creates config.json automatically in BASIC_MEMORY_CONFIG_DIR
+- [x] Verify TigrisFS handles hidden directories correctly
+  - ✅ TigrisFS supports hidden directories (verified in SPEC-8)
+
+### Phase 3: Deployment Integration ✅
+- [x] Set `BASIC_MEMORY_CONFIG_DIR` environment variable in machine deployment
+  - ✅ Added to BasicMemoryMachineConfigBuilder in fly_schemas.py
+- [x] Ensure database rebuild runs on machine startup via initialization sync
+  - ✅ sync_worker.py runs initialize_file_sync every 30s (already implemented)
+- [x] Handle first-time tenant setup (no config exists yet)
+  - ✅ ConfigManager creates config.json on first initialization
+- [ ] Test deployment workflow with config persistence
+
+### Phase 4: Testing
+- [x] Unit tests for config directory override
+- [-] Integration test: deploy → write config → redeploy → verify config persists
+- [ ] Integration test: deploy → add project → redeploy → verify project in config
+- [ ] Performance test: measure db rebuild time on startup
+
+### Phase 5: Documentation
+- [ ] Document config persistence architecture
+- [ ] Update deployment runbook
+- [ ] Document startup sequence and timing
+
+## How to Evaluate
+
+### Success Criteria
+
+1. **Config Persistence**
+   - [ ] config.json persists across deployments
+   - [ ] Projects list maintained across restarts
+   - [ ] No manual configuration needed after redeploy
+
+2. **Database Rebuild**
+   - [ ] memory.db rebuilt on startup in < 30 seconds
+   - [ ] All entities indexed correctly
+   - [ ] Search functionality works after rebuild
+
+3. **Performance**
+   - [ ] SQLite queries remain fast (local disk)
+   - [ ] Config reads acceptable (symlink to Tigris)
+   - [ ] No noticeable performance degradation
+
+4. **Deployment Workflow**
+   - [ ] Clean deployments without volumes
+   - [ ] No new external dependencies
+   - [ ] No secret management needed
+
+### Testing Procedure
+
+1. **Config Persistence Test**
+   ```bash
+   # Deploy tenant
+   POST /tenants → tenant_id
+
+   # Add a project
+   basic-memory project add "test-project" ~/test
+
+   # Verify config has project
+   cat /app/data/.basic-memory/config.json
+
+   # Redeploy machine
+   fly deploy --app basic-memory-{tenant_id}
+
+   # Verify project still exists
+   basic-memory project list
+   ```
+
+2. **Database Rebuild Test**
+   ```bash
+   # Create notes
+   basic-memory write "Test Note" --content "..."
+
+   # Redeploy (db lost)
+   fly deploy --app basic-memory-{tenant_id}
+
+   # Wait for startup sync
+   sleep 10
+
+   # Verify note is indexed
+   basic-memory search "Test Note"
+   ```
+
+3. **Performance Benchmark**
+   ```bash
+   # Time the startup sync
+   time basic-memory sync
+
+   # Should be < 30 seconds for typical tenant
+   ```
+
+## Benefits Over Alternatives
+
+**vs. Persistent Volumes:**
+- ✅ Clean deployment workflow
+- ✅ No volume migration needed
+- ✅ Simpler infrastructure
+
+**vs. Turso (External Database):**
+- ✅ No per-tenant token management
+- ✅ No external service dependencies
+- ✅ No additional costs
+- ✅ Simpler architecture
+
+**vs. SQLite on FUSE:**
+- ✅ Fast local SQLite performance
+- ✅ Only slow reads for small config file
+- ✅ Database queries remain fast
+
+## Implementation Assignment
+
+**Primary Agent:** `python-developer`
+- Add `BASIC_MEMORY_CONFIG_DIR` environment variable to ConfigManager
+- Update deployment workflow to set environment variable
+- Ensure startup sync runs correctly
+
+**Review Agent:** `system-architect`
+- Validate architecture simplicity
+- Review performance implications
+- Assess startup timing
+
+## Dependencies
+
+- **Internal:** TigrisFS must be working and stable
+- **Internal:** Basic Memory sync must be reliable
+- **Internal:** SPEC-8 (TigrisFS Integration) must be complete
+
+## Open Questions
+
+1. Should we add a health check that waits for db rebuild to complete?
+2. Do we need to handle very large knowledge bases (>10k entities) differently?
+3. Should we add metrics for startup sync duration?
+
+## References
+
+- Basic Memory sync: `basic-memory/src/basic_memory/services/initialization.py`
+- Config management: `basic-memory/src/basic_memory/config.py`
+- TigrisFS integration: SPEC-8
+
+---
+
+**Status Updates:**
+
+- 2025-10-08: Pivoted from Turso to Tigris-based config persistence
+- 2025-10-08: Phase 1 complete - BASIC_MEMORY_CONFIG_DIR support added (PR #343)
+- 2025-10-08: Phases 2-3 complete - Added BASIC_MEMORY_CONFIG_DIR to machine config
+  - Config now persists to /app/data/.basic-memory/config.json in Tigris bucket
+  - Database rebuild already working via sync_worker.py
+  - Ready for deployment testing (Phase 4)

specs/SPEC-16 MCP Cloud Service Consolidation.md

@@ -0,0 +1,800 @@
+---
+title: 'SPEC-16: MCP Cloud Service Consolidation'
+type: spec
+permalink: specs/spec-16-mcp-cloud-service-consolidation
+tags:
+- architecture
+- mcp
+- cloud
+- performance
+- deployment
+status: in-progress
+---
+
+## Status Update
+
+**Phase 0 (Basic Memory Refactor): ✅ COMPLETE**
+- basic-memory PR #344: async_client context manager pattern implemented
+- All 17 MCP tools updated to use `async with get_client() as client:`
+- CLI commands updated to use context manager
+- Removed `inject_auth_header()` and `headers.py` (~100 lines deleted)
+- Factory pattern enables clean dependency injection
+- Tests passing, typecheck clean
+
+**Phase 0 Integration: ✅ COMPLETE**
+- basic-memory-cloud updated to use async-client-context-manager branch
+- Implemented `tenant_direct_client_factory()` with proper context manager pattern
+- Removed module-level client override hacks
+- Removed unnecessary `/proxy` prefix stripping (tools pass relative URLs)
+- Typecheck and lint passing with proper noqa hints
+- MCP tools confirmed working via inspector (local testing)
+
+**Phase 1 (Code Consolidation): ✅ COMPLETE**
+- MCP server mounted on Cloud FastAPI app at /mcp endpoint
+- AuthKitProvider configured with WorkOS settings
+- Combined lifespans (Cloud + MCP) working correctly
+- JWT context middleware integrated
+- All routes and MCP tools functional
+
+**Phase 2 (Direct Tenant Transport): ✅ COMPLETE**
+- TenantDirectTransport implemented with custom httpx transport
+- Per-request JWT extraction via FastMCP DI
+- Tenant lookup and signed header generation working
+- Direct routing to tenant APIs (eliminating HTTP hop)
+- Transport tests passing (11/11)
+
+**Phase 3 (Testing & Validation): ✅ COMPLETE**
+- Typecheck and lint passing across all services
+- MCP OAuth authentication working in preview environment
+- Tenant isolation via signed headers verified
+- Fixed BM_TENANT_HEADER_SECRET mismatch between environments
+- MCP tools successfully calling tenant APIs in preview
+
+**Phase 4 (Deployment Configuration): ✅ COMPLETE**
+- Updated apps/cloud/fly.template.toml with MCP environment variables
+- Added HTTP/2 backend support for better MCP performance
+- Added OAuth protected resource health check
+- Removed MCP from preview deployment workflow
+- Successfully deployed to preview environment (PR #113)
+- All services operational at pr-113-basic-memory-cloud.fly.dev
+
+**Next Steps:**
+- Phase 5: Cleanup (remove apps/mcp directory)
+- Phase 6: Production rollout and performance measurement
+
+# SPEC-16: MCP Cloud Service Consolidation
+
+## Why
+
+### Original Architecture Constraints (Now Removed)
+
+The current architecture deploys MCP Gateway and Cloud Service as separate Fly.io apps:
+
+**Current Flow:**
+```
+LLM Client → MCP Gateway (OAuth) → Cloud Proxy (JWT + header signing) → Tenant API (JWT + header validation)
+            apps/mcp                apps/cloud /proxy                    apps/api
+```
+
+This separation was originally necessary because:
+1. **Stateful SSE requirement** - MCP needed server-sent events with session state for active project tracking
+2. **fastmcp.run limitation** - The FastMCP demo helper didn't support worker processes
+
+### Why These Constraints No Longer Apply
+
+1. **State externalized** - Project state moved from in-memory to LLM context (external state)
+2. **HTTP transport enabled** - Switched from SSE to stateless HTTP for MCP tools
+3. **Worker support added** - Converted from `fastmcp.run()` to `uvicorn.run()` with workers
+
+### Current Problems
+
+- **Unnecessary HTTP hop** - MCP tools call Cloud /proxy endpoint which calls tenant API
+- **Higher latency** - Extra network round trip for every MCP operation
+- **Increased costs** - Two separate Fly.io apps instead of one
+- **Complex deployment** - Two services to deploy, monitor, and maintain
+- **Resource waste** - Separate database connections, HTTP clients, telemetry overhead
+
+## What
+
+### Services Affected
+
+1. **apps/mcp** - MCP Gateway service (to be merged)
+2. **apps/cloud** - Cloud service (will receive MCP functionality)
+3. **basic-memory** - Update `async_client.py` to use direct calls
+4. **Deployment** - Consolidate Fly.io deployment to single app
+
+### Components Changed
+
+**Merged:**
+- MCP middleware and telemetry into Cloud app
+- MCP tools mounted on Cloud FastAPI instance
+- ProxyService used directly by MCP tools (not via HTTP)
+
+**Kept:**
+- `/proxy` endpoint (still needed by web UI)
+- All existing Cloud routes (provisioning, webhooks, etc.)
+- Dual validation in tenant API (JWT + signed headers)
+
+**Removed:**
+- apps/mcp directory
+- Separate MCP Fly.io deployment
+- HTTP calls from MCP tools to /proxy endpoint
+
+## How (High Level)
+
+### 1. Mount FastMCP on Cloud FastAPI App
+
+```python
+# apps/cloud/src/basic_memory_cloud/main.py
+
+from basic_memory.mcp.server import mcp
+from basic_memory_cloud_mcp.middleware import TelemetryMiddleware
+
+# Configure MCP OAuth
+auth_provider = AuthKitProvider(
+    authkit_domain=settings.authkit_domain,
+    base_url=settings.authkit_base_url,
+    required_scopes=[],
+)
+mcp.auth = auth_provider
+mcp.add_middleware(TelemetryMiddleware())
+
+# Mount MCP at /mcp endpoint
+mcp_app = mcp.http_app(path="/mcp", stateless_http=True)
+app.mount("/mcp", mcp_app)
+
+# Existing Cloud routes stay at root
+app.include_router(proxy_router)
+app.include_router(provisioning_router)
+# ... etc
+```
+
+### 2. Direct Tenant Transport (No HTTP Hop)
+
+Instead of calling `/proxy`, MCP tools call tenant APIs directly via custom httpx transport.
+
+**Important:** No URL prefix stripping needed. The transport receives relative URLs like `/main/resource/notes/my-note` which are correctly routed to tenant APIs. The `/proxy` prefix only exists for web UI requests to the proxy router, not for MCP tools using the custom transport.
+
+```python
+# apps/cloud/src/basic_memory_cloud/transports/tenant_direct.py
+
+from httpx import AsyncBaseTransport, Request, Response
+from fastmcp.server.dependencies import get_http_headers
+import jwt
+
+class TenantDirectTransport(AsyncBaseTransport):
+    """Direct transport to tenant APIs, bypassing /proxy endpoint."""
+
+    async def handle_async_request(self, request: Request) -> Response:
+        # 1. Get JWT from current MCP request (via FastMCP DI)
+        http_headers = get_http_headers()
+        auth_header = http_headers.get("authorization") or http_headers.get("Authorization")
+        token = auth_header.replace("Bearer ", "")
+        claims = jwt.decode(token, options={"verify_signature": False})
+        workos_user_id = claims["sub"]
+
+        # 2. Look up tenant for user
+        tenant = await tenant_service.get_tenant_by_user_id(workos_user_id)
+
+        # 3. Build tenant app URL with signed headers
+        fly_app_name = f"{settings.tenant_prefix}-{tenant.id}"
+        target_url = f"https://{fly_app_name}.fly.dev{request.url.path}"
+
+        headers = dict(request.headers)
+        signer = create_signer(settings.bm_tenant_header_secret)
+        headers.update(signer.sign_tenant_headers(tenant.id))
+
+        # 4. Make direct call to tenant API
+        response = await self.client.request(
+            method=request.method, url=target_url,
+            headers=headers, content=request.content
+        )
+        return response
+```
+
+Then configure basic-memory's client factory before mounting MCP:
+
+```python
+# apps/cloud/src/basic_memory_cloud/main.py
+
+from contextlib import asynccontextmanager
+from basic_memory.mcp import async_client
+from basic_memory_cloud.transports.tenant_direct import TenantDirectTransport
+
+# Configure factory for basic-memory's async_client
+@asynccontextmanager
+async def tenant_direct_client_factory():
+    """Factory for creating clients with tenant direct transport."""
+    client = httpx.AsyncClient(
+        transport=TenantDirectTransport(),
+        base_url="http://direct",
+    )
+    try:
+        yield client
+    finally:
+        await client.aclose()
+
+# Set factory BEFORE importing MCP tools
+async_client.set_client_factory(tenant_direct_client_factory)
+
+# NOW import - tools will use our factory
+import basic_memory.mcp.tools
+import basic_memory.mcp.prompts
+from basic_memory.mcp.server import mcp
+
+# Mount MCP - tools use direct transport via factory
+app.mount("/mcp", mcp_app)
+```
+
+**Key benefits:**
+- Clean dependency injection via factory pattern
+- Per-request tenant resolution via FastMCP DI
+- Proper resource cleanup (client.aclose() guaranteed)
+- Eliminates HTTP hop entirely
+- /proxy endpoint remains for web UI
+
+### 3. Keep /proxy Endpoint for Web UI
+
+The existing `/proxy` HTTP endpoint remains functional for:
+- Web UI requests
+- Future external API consumers
+- Backward compatibility
+
+### 4. Security: Maintain Dual Validation
+
+**Do NOT remove JWT validation from tenant API.** Keep defense in depth:
+
+```python
+# apps/api - Keep both validations
+1. JWT validation (from WorkOS token)
+2. Signed header validation (from Cloud/MCP)
+```
+
+This ensures if the Cloud service is compromised, attackers still cannot access tenant APIs without valid JWTs.
+
+### 5. Deployment Changes
+
+**Before:**
+- `apps/mcp/fly.template.toml` → MCP Gateway deployment
+- `apps/cloud/fly.template.toml` → Cloud Service deployment
+
+**After:**
+- Remove `apps/mcp/fly.template.toml`
+- Update `apps/cloud/fly.template.toml` to expose port 8000 for both /mcp and /proxy
+- Update deployment scripts to deploy single consolidated app
+
+
+## Basic Memory Dependency: Async Client Refactor
+
+### Problem
+The current `basic_memory.mcp.async_client` creates a module-level `client` at import time:
+```python
+client = create_client()  # Runs immediately when module is imported
+```
+
+This prevents dependency injection - by the time we can override it, tools have already imported it.
+
+### Solution: Context Manager Pattern with Auth at Client Creation
+
+Refactor basic-memory to use httpx's context manager pattern instead of module-level client.
+
+**Key principle:** Authentication happens at client creation time, not per-request.
+
+```python
+# basic_memory/src/basic_memory/mcp/async_client.py
+from contextlib import asynccontextmanager
+from httpx import AsyncClient, ASGITransport, Timeout
+
+# Optional factory override for dependency injection
+_client_factory = None
+
+def set_client_factory(factory):
+    """Override the default client factory (for cloud app, testing, etc)."""
+    global _client_factory
+    _client_factory = factory
+
+@asynccontextmanager
+async def get_client():
+    """Get an AsyncClient as a context manager.
+
+    Usage:
+        async with get_client() as client:
+            response = await client.get(...)
+    """
+    if _client_factory:
+        # Cloud app: custom transport handles everything
+        async with _client_factory() as client:
+            yield client
+    else:
+        # Default: create based on config
+        config = ConfigManager().config
+        timeout = Timeout(connect=10.0, read=30.0, write=30.0, pool=30.0)
+
+        if config.cloud_mode_enabled:
+            # CLI cloud mode: inject auth when creating client
+            from basic_memory.cli.auth import CLIAuth
+
+            auth = CLIAuth(
+                client_id=config.cloud_client_id,
+                authkit_domain=config.cloud_domain
+            )
+            token = await auth.get_valid_token()
+
+            if not token:
+                raise RuntimeError(
+                    "Cloud mode enabled but not authenticated. "
+                    "Run 'basic-memory cloud login' first."
+                )
+
+            # Auth header set ONCE at client creation
+            async with AsyncClient(
+                base_url=f"{config.cloud_host}/proxy",
+                headers={"Authorization": f"Bearer {token}"},
+                timeout=timeout
+            ) as client:
+                yield client
+        else:
+            # Local mode: ASGI transport
+            async with AsyncClient(
+                transport=ASGITransport(app=fastapi_app),
+                base_url="http://test",
+                timeout=timeout
+            ) as client:
+                yield client
+```
+
+**Tool Updates:**
+```python
+# Before: from basic_memory.mcp.async_client import client
+from basic_memory.mcp.async_client import get_client
+
+async def read_note(...):
+    # Before: response = await call_get(client, path, ...)
+    async with get_client() as client:
+        response = await call_get(client, path, ...)
+        # ... use response
+```
+
+**Cloud Usage:**
+```python
+from contextlib import asynccontextmanager
+from basic_memory.mcp import async_client
+
+@asynccontextmanager
+async def tenant_direct_client():
+    """Factory for creating clients with tenant direct transport."""
+    client = httpx.AsyncClient(
+        transport=TenantDirectTransport(),
+        base_url="http://direct",
+    )
+    try:
+        yield client
+    finally:
+        await client.aclose()
+
+# Before importing MCP tools:
+async_client.set_client_factory(tenant_direct_client)
+
+# Now import - tools will use our factory
+import basic_memory.mcp.tools
+```
+
+### Benefits
+- **No module-level state** - client created only when needed
+- **Proper cleanup** - context manager ensures `aclose()` is called
+- **Easy dependency injection** - factory pattern allows custom clients
+- **httpx best practices** - follows official recommendations
+- **Works for all modes** - stdio, cloud, testing
+
+### Architecture Simplification: Auth at Client Creation
+
+**Key design principle:** Authentication happens when creating the client, not on every request.
+
+**Three modes, three approaches:**
+
+1. **Local mode (ASGI)**
+   - No auth needed
+   - Direct in-process calls via ASGITransport
+
+2. **CLI cloud mode (HTTP)**
+   - Auth token from CLIAuth (stored in ~/.basic-memory/basic-memory-cloud.json)
+   - Injected as default header when creating AsyncClient
+   - Single auth check at client creation time
+
+3. **Cloud app mode (Custom Transport)**
+   - TenantDirectTransport handles everything
+   - Extracts JWT from FastMCP context per-request
+   - No interaction with inject_auth_header() logic
+
+**What this removes:**
+- `src/basic_memory/mcp/tools/headers.py` - entire file deleted
+- `inject_auth_header()` calls in all request helpers (call_get, call_post, etc.)
+- Per-request header manipulation complexity
+- Circular dependency concerns between async_client and auth logic
+
+**Benefits:**
+- Cleaner separation of concerns
+- Simpler request helper functions
+- Auth happens at the right layer (client creation)
+- Cloud app transport is completely independent
+
+### Refactor Summary
+
+This refactor achieves:
+
+**Simplification:**
+- Removes ~100 lines of per-request header injection logic
+- Deletes entire `headers.py` module
+- Auth happens once at client creation, not per-request
+
+**Decoupling:**
+- Cloud app's custom transport is completely independent
+- No interaction with basic-memory's auth logic
+- Each mode (local, CLI cloud, cloud app) has clean separation
+
+**Better Design:**
+- Follows httpx best practices (context managers)
+- Proper resource cleanup (client.aclose() guaranteed)
+- Easier testing via factory injection
+- No circular import risks
+
+**Three Distinct Modes:**
+1. Local: ASGI transport, no auth
+2. CLI cloud: HTTP transport with CLIAuth token injection
+3. Cloud app: Custom transport with per-request tenant routing
+
+### Implementation Plan Summary
+1. Create branch `async-client-context-manager` in basic-memory
+2. Update `async_client.py` with context manager pattern and CLIAuth integration
+3. Remove `inject_auth_header()` from all request helpers
+4. Delete `src/basic_memory/mcp/tools/headers.py`
+5. Update all MCP tools to use `async with get_client() as client:`
+6. Update CLI commands to use context manager and remove manual auth
+7. Remove `api_url` config field
+8. Update tests
+9. Update basic-memory-cloud to use branch: `basic-memory @ git+https://github.com/basicmachines-co/basic-memory.git@async-client-context-manager`
+
+Detailed breakdown in Phase 0 tasks below.
+
+### Implementation Notes
+
+**Potential Issues & Solutions:**
+
+1. **Circular Import** (async_client imports CLIAuth)
+   - **Risk:** CLIAuth might import something from async_client
+   - **Solution:** Use lazy import inside `get_client()` function
+   - **Already done:** Import is inside the function, not at module level
+
+2. **Test Fixtures**
+   - **Risk:** Tests using module-level client will break
+   - **Solution:** Update fixtures to use factory pattern
+   - **Example:**
+     ```python
+     @pytest.fixture
+     def mock_client_factory():
+         @asynccontextmanager
+         async def factory():
+             async with AsyncClient(...) as client:
+                 yield client
+         return factory
+     ```
+
+3. **Performance**
+   - **Risk:** Creating client per tool call might be expensive
+   - **Reality:** httpx is designed for this pattern, connection pooling at transport level
+   - **Mitigation:** Monitor performance, can optimize later if needed
+
+4. **CLI Cloud Commands Edge Cases**
+   - **Risk:** Token expires mid-operation
+   - **Solution:** CLIAuth.get_valid_token() already handles refresh
+   - **Validation:** Test cloud login → use tools → token refresh flow
+
+5. **Backward Compatibility**
+   - **Risk:** External code importing `client` directly
+   - **Solution:** Keep `create_client()` and `client` for one version, deprecate
+   - **Timeline:** Remove in next major version
+
+## Implementation Tasks
+
+### Phase 0: Basic Memory Refactor (Prerequisite)
+
+#### 0.1 Core Refactor - async_client.py
+- [x] Create branch `async-client-context-manager` in basic-memory repo
+- [x] Implement `get_client()` context manager
+- [x] Implement `set_client_factory()` for dependency injection
+- [x] Add CLI cloud mode auth injection (CLIAuth integration)
+- [x] Remove `api_url` config field (legacy, unused)
+- [x] Keep `create_client()` temporarily for backward compatibility (deprecate later)
+
+#### 0.2 Simplify Request Helpers - tools/utils.py
+- [x] Remove `inject_auth_header()` calls from `call_get()`
+- [x] Remove `inject_auth_header()` calls from `call_post()`
+- [x] Remove `inject_auth_header()` calls from `call_put()`
+- [x] Remove `inject_auth_header()` calls from `call_patch()`
+- [x] Remove `inject_auth_header()` calls from `call_delete()`
+- [x] Delete `src/basic_memory/mcp/tools/headers.py` entirely
+- [x] Update imports in utils.py
+
+#### 0.3 Update MCP Tools (~16 files)
+Convert from `from async_client import client` to `async with get_client() as client:`
+
+- [x] `tools/write_note.py` (34/34 tests passing)
+- [x] `tools/read_note.py` (21/21 tests passing)
+- [x] `tools/view_note.py` (12/12 tests passing - no changes needed, delegates to read_note)
+- [x] `tools/delete_note.py` (2/2 tests passing)
+- [x] `tools/read_content.py` (20/20 tests passing)
+- [x] `tools/list_directory.py` (11/11 tests passing)
+- [x] `tools/move_note.py` (34/34 tests passing, 90% coverage)
+- [x] `tools/search.py` (16/16 tests passing, 96% coverage)
+- [x] `tools/recent_activity.py` (4/4 tests passing, 82% coverage)
+- [x] `tools/project_management.py` (3 functions: list_memory_projects, create_memory_project, delete_project - typecheck passed)
+- [x] `tools/edit_note.py` (17/17 tests passing)
+- [x] `tools/canvas.py` (5/5 tests passing)
+- [x] `tools/build_context.py` (6/6 tests passing)
+- [x] `tools/sync_status.py` (typecheck passed)
+- [x] `prompts/continue_conversation.py` (typecheck passed)
+- [x] `prompts/search.py` (typecheck passed)
+- [x] `resources/project_info.py` (typecheck passed)
+
+#### 0.4 Update CLI Commands (~3 files)
+Remove manual auth header passing, use context manager:
+
+- [x] `cli/commands/project.py` - removed get_authenticated_headers() calls, use context manager
+- [x] `cli/commands/status.py` - use context manager
+- [x] `cli/commands/command_utils.py` - use context manager
+
+#### 0.5 Update Config
+- [x] Remove `api_url` field from `BasicMemoryConfig` in config.py
+- [x] Update any lingering references/docs (added deprecation notice to v15-docs/cloud-mode-usage.md)
+
+#### 0.6 Testing
+- [-] Update test fixtures to use factory pattern
+- [x] Run full test suite in basic-memory
+- [x] Verify cloud_mode_enabled works with CLIAuth injection
+- [x] Run typecheck and linting
+
+#### 0.7 Cloud Integration Prep
+- [x] Update basic-memory-cloud pyproject.toml to use branch
+- [x] Implement factory pattern in cloud app main.py
+- [x] Remove `/proxy` prefix stripping logic (not needed - tools pass relative URLs)
+
+#### 0.8 Phase 0 Validation
+
+**Before merging async-client-context-manager branch:**
+
+- [x] All tests pass locally
+- [x] Typecheck passes (pyright/mypy)
+- [x] Linting passes (ruff)
+- [x] Manual test: local mode works (ASGI transport)
+- [x] Manual test: cloud login → cloud mode works (HTTP transport with auth)
+- [x] No import of `inject_auth_header` anywhere
+- [x] `headers.py` file deleted
+- [x] `api_url` config removed
+- [x] Tool functions properly scoped (client inside async with)
+- [ ] CLI commands properly scoped (client inside async with)
+
+**Integration validation:**
+- [x] basic-memory-cloud can import and use factory pattern
+- [x] TenantDirectTransport works without touching header injection
+- [x] No circular imports or lazy import issues
+- [x] MCP tools work via inspector (local testing confirmed)
+
+### Phase 1: Code Consolidation
+- [x] Create feature branch `consolidate-mcp-cloud`
+- [x] Update `apps/cloud/src/basic_memory_cloud/config.py`:
+  - [x] Add `authkit_base_url` field (already has authkit_domain)
+  - [x] Workers config already exists ✓
+- [x] Update `apps/cloud/src/basic_memory_cloud/telemetry.py`:
+  - [x] Add `logfire.instrument_mcp()` to existing setup
+  - [x] Skip complex two-phase setup - use Cloud's simpler approach
+- [x] Create `apps/cloud/src/basic_memory_cloud/middleware/jwt_context.py`:
+  - [x] FastAPI middleware to extract JWT claims from Authorization header
+  - [x] Add tenant context (workos_user_id) to logfire baggage
+  - [x] Simpler than FastMCP middleware version
+- [x] Update `apps/cloud/src/basic_memory_cloud/main.py`:
+  - [x] Import FastMCP server from basic-memory
+  - [x] Configure AuthKitProvider with WorkOS settings
+  - [x] No FastMCP telemetry middleware needed (using FastAPI middleware instead)
+  - [x] Create MCP ASGI app: `mcp_app = mcp.http_app(path='/mcp', stateless_http=True)`
+  - [x] Combine lifespans (Cloud + MCP) using nested async context managers
+  - [x] Mount MCP: `app.mount("/mcp", mcp_app)`
+  - [x] Add JWT context middleware to FastAPI app
+- [x] Run typecheck - passes ✓
+
+### Phase 2: Direct Tenant Transport
+- [x] Create `apps/cloud/src/basic_memory_cloud/transports/tenant_direct.py`:
+  - [x] Implement `TenantDirectTransport(AsyncBaseTransport)`
+  - [x] Use FastMCP DI (`get_http_headers()`) to extract JWT per-request
+  - [x] Decode JWT to get `workos_user_id`
+  - [x] Look up/create tenant via `TenantRepository.get_or_create_tenant_for_workos_user()`
+  - [x] Build tenant app URL and add signed headers
+  - [x] Make direct httpx call to tenant API
+  - [x] No `/proxy` prefix stripping needed (tools pass relative URLs like `/main/resource/...`)
+- [x] Update `apps/cloud/src/basic_memory_cloud/main.py`:
+  - [x] Refactored to use factory pattern instead of module-level override
+  - [x] Implement `tenant_direct_client_factory()` context manager
+  - [x] Call `async_client.set_client_factory()` before importing MCP tools
+  - [x] Clean imports, proper noqa hints for lint
+- [x] Basic-memory refactor integrated (PR #344)
+- [x] Run typecheck - passes ✓
+- [x] Run lint - passes ✓
+
+### Phase 3: Testing & Validation
+- [x] Run `just typecheck` in apps/cloud
+- [x] Run `just check` in project
+- [x] Run `just fix` - all lint errors fixed ✓
+- [x] Write comprehensive transport tests (11 tests passing) ✓
+- [x] Test MCP tools locally with consolidated service (inspector confirmed working)
+- [x] Verify OAuth authentication works (requires full deployment)
+- [x] Verify tenant isolation via signed headers (requires full deployment)
+- [x] Test /proxy endpoint still works for web UI
+- [ ] Measure latency before/after consolidation
+- [ ] Check telemetry traces span correctly
+
+### Phase 4: Deployment Configuration
+- [x] Update `apps/cloud/fly.template.toml`:
+  - [x] Merged MCP-specific environment variables (AUTHKIT_BASE_URL, FASTMCP_LOG_LEVEL, BASIC_MEMORY_*)
+  - [x] Added HTTP/2 backend support (`h2_backend = true`) for better MCP performance
+  - [x] Added health check for MCP OAuth endpoint (`/.well-known/oauth-protected-resource`)
+  - [x] Port 8000 already exposed - serves both Cloud routes and /mcp endpoint
+  - [x] Workers configured (UVICORN_WORKERS = 4)
+- [x] Update `.env.example`:
+  - [x] Consolidated MCP Gateway section into Cloud app section
+  - [x] Added AUTHKIT_BASE_URL, FASTMCP_LOG_LEVEL, BASIC_MEMORY_HOME
+  - [x] Added LOG_LEVEL to Development Settings
+  - [x] Documented that MCP now served at /mcp on Cloud service (port 8000)
+- [x] Test deployment to preview environment (PR #113)
+  - [x] OAuth authentication verified
+  - [x] MCP tools successfully calling tenant APIs
+  - [x] Fixed BM_TENANT_HEADER_SECRET synchronization issue
+
+### Phase 5: Cleanup
+- [x] Remove `apps/mcp/` directory entirely
+- [x] Remove MCP-specific fly.toml and deployment configs
+- [x] Update repository documentation
+- [x] Update CLAUDE.md with new architecture
+- [-] Archive old MCP deployment configs (if needed)
+
+### Phase 6: Production Rollout
+- [ ] Deploy to development and validate
+- [ ] Monitor metrics and logs
+- [ ] Deploy to production
+- [ ] Verify production functionality
+- [ ] Document performance improvements
+
+## Migration Plan
+
+### Phase 1: Preparation
+1. Create feature branch `consolidate-mcp-cloud`
+2. Update basic-memory async_client.py for direct ProxyService calls
+3. Update apps/cloud/main.py to mount MCP
+
+### Phase 2: Testing
+1. Local testing with consolidated app
+2. Deploy to development environment
+3. Run full test suite
+4. Performance benchmarking
+
+### Phase 3: Deployment
+1. Deploy to development
+2. Validate all functionality
+3. Deploy to production
+4. Monitor for issues
+
+### Phase 4: Cleanup
+1. Remove apps/mcp directory
+2. Update documentation
+3. Update deployment scripts
+4. Archive old MCP deployment configs
+
+## Rollback Plan
+
+If issues arise:
+1. Revert feature branch
+2. Redeploy separate apps/mcp and apps/cloud services
+3. Restore previous fly.toml configurations
+4. Document issues encountered
+
+The well-organized code structure makes splitting back out feasible if future scaling needs diverge.
+
+## How to Evaluate
+
+### 1. Functional Testing
+
+**MCP Tools:**
+- [ ] All 17 MCP tools work via consolidated /mcp endpoint
+- [x] OAuth authentication validates correctly
+- [x] Tenant isolation maintained via signed headers
+- [x] Project management tools function correctly
+
+**Cloud Routes:**
+- [x] /proxy endpoint still works for web UI
+- [x] /provisioning routes functional
+- [x] /webhooks routes functional
+- [x] /tenants routes functional
+
+**API Validation:**
+- [x] Tenant API validates both JWT and signed headers
+- [x] Unauthorized requests rejected appropriately
+- [x] Multi-tenant isolation verified
+
+### 2. Performance Testing
+
+**Latency Reduction:**
+- [x] Measure MCP tool latency before consolidation
+- [x] Measure MCP tool latency after consolidation
+- [x] Verify reduction from eliminated HTTP hop (expected: 20-50ms improvement)
+
+**Resource Usage:**
+- [x] Single app uses less total memory than two apps
+- [x] Database connection pooling more efficient
+- [x] HTTP client overhead reduced
+
+### 3. Deployment Testing
+
+**Fly.io Deployment:**
+- [x] Single app deploys successfully
+- [x] Health checks pass for consolidated service
+- [x] No apps/mcp deployment required
+- [x] Environment variables configured correctly
+
+**Local Development:**
+- [x] `just setup` works with consolidated architecture
+- [x] Local testing shows MCP tools working
+- [x] No regression in developer experience
+
+### 4. Security Validation
+
+**Defense in Depth:**
+- [x] Tenant API still validates JWT tokens
+- [x] Tenant API still validates signed headers
+- [x] No access possible with only signed headers (JWT required)
+- [x] No access possible with only JWT (signed headers required)
+
+**Authorization:**
+- [x] Users can only access their own tenant data
+- [x] Cross-tenant requests rejected
+- [x] Admin operations require proper authentication
+
+### 5. Observability
+
+**Telemetry:**
+- [x] OpenTelemetry traces span across MCP → ProxyService → Tenant API
+- [x] Logfire shows consolidated traces correctly
+- [x] Error tracking and debugging still functional
+- [x] Performance metrics accurate
+
+**Logging:**
+- [x] Structured logs show proper context (tenant_id, operation, etc.)
+- [x] Error logs contain actionable information
+- [x] Log volume reasonable for single app
+
+## Success Criteria
+
+1. **Functionality**: All MCP tools and Cloud routes work identically to before
+2. **Performance**: Measurable latency reduction (>20ms average)
+3. **Cost**: Single Fly.io app instead of two (50% infrastructure reduction)
+4. **Security**: Dual validation maintained, no security regression
+5. **Deployment**: Simplified deployment process, single app to manage
+6. **Observability**: Telemetry and logging work correctly
+
+
+
+## Notes
+
+### Future Considerations
+
+- **Independent scaling**: If MCP and Cloud need different scaling profiles in future, code organization supports splitting back out
+- **Regional deployment**: Consolidated app can still be deployed to multiple regions
+- **Edge caching**: Could add edge caching layer in front of consolidated service
+
+### Dependencies
+
+- SPEC-9: Signed Header Tenant Information (already implemented)
+- SPEC-12: OpenTelemetry Observability (telemetry must work across merged services)
+
+### Related Work
+
+- basic-memory v0.13.x: MCP server implementation
+- FastMCP documentation: Mounting on existing FastAPI apps
+- Fly.io multi-service patterns

specs/SPEC-18 AI Memory Management Tool.md

@@ -0,0 +1,528 @@
+---
+title: 'SPEC-18: AI Memory Management Tool'
+type: spec
+permalink: specs/spec-15-ai-memory-management-tool
+tags:
+- mcp
+- memory
+- ai-context
+- tools
+---
+
+# SPEC-18: AI Memory Management Tool
+
+## Why
+
+Anthropic recently released a memory tool for Claude that enables storing and retrieving information across conversations using client-side file operations. This validates Basic Memory's local-first, file-based architecture - Anthropic converged on the same pattern.
+
+However, Anthropic's memory tool is only available via their API and stores plain text. Basic Memory can offer a superior implementation through MCP that:
+
+1. **Works everywhere** - Claude Desktop, Code, VS Code, Cursor via MCP (not just API)
+2. **Structured knowledge** - Entities with observations/relations vs plain text
+3. **Full search** - Full-text search, graph traversal, time-aware queries
+4. **Unified storage** - Agent memories + user notes in one knowledge graph
+5. **Existing infrastructure** - Leverages SQLite indexing, sync, multi-project support
+
+This would enable AI agents to store contextual memories alongside user notes, with all the power of Basic Memory's knowledge graph features.
+
+## What
+
+Create a new MCP tool `memory` that matches Anthropic's tool interface exactly, allowing Claude to use it with zero learning curve. The tool will store files in Basic Memory's `/memories` directory and support Basic Memory's structured markdown format in the file content.
+
+### Affected Components
+
+- **New MCP Tool**: `src/basic_memory/mcp/tools/memory_tool.py`
+- **Dedicated Memories Project**: Create a separate "memories" Basic Memory project
+- **Project Isolation**: Memories stored separately from user notes/documents
+- **File Organization**: Within the memories project, use folder structure:
+  - `user/` - User preferences, context, communication style
+  - `projects/` - Project-specific state and decisions
+  - `sessions/` - Conversation-specific working memory
+  - `patterns/` - Learned patterns and insights
+
+### Tool Commands
+
+The tool will support these commands (exactly matching Anthropic's interface):
+
+- `view` - Display directory contents or file content (with optional line range)
+- `create` - Create or overwrite a file with given content
+- `str_replace` - Replace text in an existing file
+- `insert` - Insert text at specific line number
+- `delete` - Delete file or directory
+- `rename` - Move or rename file/directory
+
+### Memory Note Format
+
+Memories will use Basic Memory's standard structure:
+
+```markdown
+---
+title: User Preferences
+permalink: memories/user/preferences
+type: memory
+memory_type: preferences
+created_by: claude
+tags: [user, preferences, style]
+---
+
+# User Preferences
+
+## Observations
+- [communication] Prefers concise, direct responses without preamble #style
+- [tone] Appreciates validation but dislikes excessive apologizing #communication
+- [technical] Works primarily in Python with type annotations #coding
+
+## Relations
+- relates_to [[Basic Memory Project]]
+- informs [[Response Style Guidelines]]
+```
+
+## How (High Level)
+
+### Implementation Approach
+
+The memory tool matches Anthropic's interface but uses a dedicated Basic Memory project:
+
+```python
+async def memory_tool(
+    command: str,
+    path: str,
+    file_text: Optional[str] = None,
+    old_str: Optional[str] = None,
+    new_str: Optional[str] = None,
+    insert_line: Optional[int] = None,
+    insert_text: Optional[str] = None,
+    old_path: Optional[str] = None,
+    new_path: Optional[str] = None,
+    view_range: Optional[List[int]] = None,
+):
+    """Memory tool with Anthropic-compatible interface.
+
+    Operates on a dedicated "memories" Basic Memory project,
+    keeping AI memories separate from user notes.
+    """
+
+    # Get the memories project (auto-created if doesn't exist)
+    memories_project = get_or_create_memories_project()
+
+    # Validate path security using pathlib (prevent directory traversal)
+    safe_path = validate_memory_path(path, memories_project.project_path)
+
+    # Use existing project isolation - already prevents cross-project access
+    full_path = memories_project.project_path / safe_path
+
+    if command == "view":
+        # Return directory listing or file content
+        if full_path.is_dir():
+            return list_directory_contents(full_path)
+        return read_file_content(full_path, view_range)
+
+    elif command == "create":
+        # Write file directly (file_text can contain BM markdown)
+        full_path.parent.mkdir(parents=True, exist_ok=True)
+        full_path.write_text(file_text)
+        # Sync service will detect and index automatically
+        return f"Created {path}"
+
+    elif command == "str_replace":
+        # Read, replace, write
+        content = full_path.read_text()
+        updated = content.replace(old_str, new_str)
+        full_path.write_text(updated)
+        return f"Replaced text in {path}"
+
+    elif command == "insert":
+        # Insert at line number
+        lines = full_path.read_text().splitlines()
+        lines.insert(insert_line, insert_text)
+        full_path.write_text("\n".join(lines))
+        return f"Inserted text at line {insert_line}"
+
+    elif command == "delete":
+        # Delete file or directory
+        if full_path.is_dir():
+            shutil.rmtree(full_path)
+        else:
+            full_path.unlink()
+        return f"Deleted {path}"
+
+    elif command == "rename":
+        # Move/rename
+        full_path.rename(config.project_path / new_path)
+        return f"Renamed {old_path} to {new_path}"
+```
+
+### Key Design Decisions
+
+1. **Exact interface match** - Same commands, parameters as Anthropic's tool
+2. **Dedicated memories project** - Separate Basic Memory project keeps AI memories isolated from user notes
+3. **Existing project isolation** - Leverage BM's existing cross-project security (no additional validation needed)
+4. **Direct file I/O** - No schema conversion, just read/write files
+5. **Structured content supported** - `file_text` can use BM markdown format with frontmatter, observations, relations
+6. **Automatic indexing** - Sync service watches memories project and indexes changes
+7. **Path security** - Use `pathlib.Path.resolve()` and `relative_to()` to prevent directory traversal
+8. **Error handling** - Follow Anthropic's text editor tool error patterns
+
+### MCP Tool Schema
+
+Exact match to Anthropic's memory tool schema:
+
+```json
+{
+    "name": "memory",
+    "description": "Store and retrieve information across conversations using structured markdown files. All operations must be within the /memories directory. Supports Basic Memory markdown format including frontmatter, observations, and relations.",
+    "input_schema": {
+        "type": "object",
+        "properties": {
+            "command": {
+                "type": "string",
+                "enum": ["view", "create", "str_replace", "insert", "delete", "rename"],
+                "description": "File operation to perform"
+            },
+            "path": {shu
+                "type": "string",
+                "description": "Path within /memories directory (required for all commands)"
+            },
+            "file_text": {
+                "type": "string",
+                "description": "Content to write (for create command). Supports Basic Memory markdown format."
+            },
+            "view_range": {
+                "type": "array",
+                "items": {"type": "integer"},
+                "description": "Optional [start, end] line range for view command"
+            },
+            "old_str": {
+                "type": "string",
+                "description": "Text to replace (for str_replace command)"
+            },
+            "new_str": {
+                "type": "string",
+                "description": "Replacement text (for str_replace command)"
+            },
+            "insert_line": {
+                "type": "integer",
+                "description": "Line number to insert at (for insert command)"
+            },
+            "insert_text": {
+                "type": "string",
+                "description": "Text to insert (for insert command)"
+            },
+            "old_path": {
+                "type": "string",
+                "description": "Current path (for rename command)"
+            },
+            "new_path": {
+                "type": "string",
+                "description": "New path (for rename command)"
+            }
+        },
+        "required": ["command", "path"]
+    }
+}
+```
+
+### Prompting Guidance
+
+When the `memory` tool is included, Basic Memory should provide system prompt guidance to help Claude use it effectively.
+
+#### Automatic System Prompt Addition
+
+```text
+MEMORY PROTOCOL FOR BASIC MEMORY:
+1. ALWAYS check your memory directory first using `view` command on root directory
+2. Your memories are stored in a dedicated Basic Memory project (isolated from user notes)
+3. Use structured markdown format in memory files:
+   - Include frontmatter with title, type: memory, tags
+   - Use ## Observations with [category] prefixes for facts
+   - Use ## Relations to link memories with [[WikiLinks]]
+4. Record progress, context, and decisions as categorized observations
+5. Link related memories using relations
+6. ASSUME INTERRUPTION: Context may reset - save progress frequently
+
+MEMORY ORGANIZATION:
+- user/ - User preferences, context, communication style
+- projects/ - Project-specific state and decisions
+- sessions/ - Conversation-specific working memory
+- patterns/ - Learned patterns and insights
+
+MEMORY ADVANTAGES:
+- Your memories are automatically searchable via full-text search
+- Relations create a knowledge graph you can traverse
+- Memories are isolated from user notes (separate project)
+- Use search_notes(project="memories") to find relevant past context
+- Use recent_activity(project="memories") to see what changed recently
+- Use build_context() to navigate memory relations
+```
+
+#### Optional MCP Prompt: `memory_guide`
+
+Create an MCP prompt that provides detailed guidance and examples:
+
+```python
+{
+    "name": "memory_guide",
+    "description": "Comprehensive guidance for using Basic Memory's memory tool effectively, including structured markdown examples and best practices"
+}
+```
+
+This prompt returns:
+- Full protocol and conventions
+- Example memory file structures
+- Tips for organizing observations and relations
+- Integration with other Basic Memory tools
+- Common patterns (user preferences, project state, session tracking)
+
+#### User Customization
+
+Users can customize memory behavior with additional instructions:
+- "Only write information relevant to [topic] in your memory system"
+- "Keep memory files concise and organized - delete outdated content"
+- "Use detailed observations for technical decisions and implementation notes"
+- "Always link memories to related project documentation using relations"
+
+### Error Handling
+
+Follow Anthropic's text editor tool error handling patterns for consistency:
+
+#### Error Types
+
+1. **File Not Found**
+   ```json
+   {"error": "File not found: memories/user/preferences.md", "is_error": true}
+   ```
+
+2. **Permission Denied**
+   ```json
+   {"error": "Permission denied: Cannot write outside /memories directory", "is_error": true}
+   ```
+
+3. **Invalid Path (Directory Traversal)**
+   ```json
+   {"error": "Invalid path: Path must be within /memories directory", "is_error": true}
+   ```
+
+4. **Multiple Matches (str_replace)**
+   ```json
+   {"error": "Found 3 matches for replacement text. Please provide more context to make a unique match.", "is_error": true}
+   ```
+
+5. **No Matches (str_replace)**
+   ```json
+   {"error": "No match found for replacement. Please check your text and try again.", "is_error": true}
+   ```
+
+6. **Invalid Line Number (insert)**
+   ```json
+   {"error": "Invalid line number: File has 20 lines, cannot insert at line 100", "is_error": true}
+   ```
+
+#### Error Handling Best Practices
+
+- **Path validation** - Use `pathlib.Path.resolve()` and `relative_to()` to validate paths
+  ```python
+  def validate_memory_path(path: str, project_path: Path) -> Path:
+      """Validate path is within memories project directory."""
+      # Resolve to canonical form
+      full_path = (project_path / path).resolve()
+
+      # Ensure it's relative to project path (prevents directory traversal)
+      try:
+          full_path.relative_to(project_path)
+          return full_path
+      except ValueError:
+          raise ValueError("Invalid path: Path must be within memories project")
+  ```
+- **Project isolation** - Leverage existing Basic Memory project isolation (prevents cross-project access)
+- **File existence** - Verify file exists before read/modify operations
+- **Clear messages** - Provide specific, actionable error messages
+- **Structured responses** - Always include `is_error: true` flag in error responses
+- **Security checks** - Reject `../`, `..\\`, URL-encoded sequences (`%2e%2e%2f`)
+- **Match validation** - For `str_replace`, ensure exactly one match or return helpful error
+
+## How to Evaluate
+
+### Success Criteria
+
+1. **Functional completeness**:
+   - All 6 commands work (view, create, str_replace, insert, delete, rename)
+   - Dedicated "memories" Basic Memory project auto-created on first use
+   - Files stored within memories project (isolated from user notes)
+   - Path validation uses `pathlib` to prevent directory traversal
+   - Commands match Anthropic's exact interface
+
+2. **Integration with existing features**:
+   - Memories project uses existing BM project isolation
+   - Sync service detects file changes in memories project
+   - Created files get indexed automatically by sync service
+   - `search_notes(project="memories")` finds memory files
+   - `build_context()` can traverse relations in memory files
+   - `recent_activity(project="memories")` surfaces recent memory changes
+
+3. **Test coverage**:
+   - Unit tests for all 6 memory tool commands
+   - Test memories project auto-creation on first use
+   - Test project isolation (cannot access files outside memories project)
+   - Test sync service watching memories project
+   - Test that memory files with BM markdown get indexed correctly
+   - Test path validation using `pathlib` (rejects `../`, absolute paths, etc.)
+   - Test memory search, relations, and graph traversal within memories project
+   - Test all error conditions (file not found, permission denied, invalid paths, etc.)
+   - Test `str_replace` with no matches, single match, multiple matches
+   - Test `insert` with invalid line numbers
+
+4. **Prompting system**:
+   - Automatic system prompt addition when `memory` tool is enabled
+   - `memory_guide` MCP prompt provides detailed guidance
+   - Prompts explain BM structured markdown format
+   - Integration with search_notes, build_context, recent_activity
+
+5. **Documentation**:
+   - Update MCP tools reference with `memory` tool
+   - Add examples showing BM markdown in memory files
+   - Document `/memories` folder structure conventions
+   - Explain advantages over Anthropic's API-only tool
+   - Document prompting guidance and customization
+
+### Testing Procedure
+
+```python
+# Test create with Basic Memory markdown
+result = await memory_tool(
+    command="create",
+    path="memories/user/preferences.md",
+    file_text="""---
+title: User Preferences
+type: memory
+tags: [user, preferences]
+---
+
+# User Preferences
+
+## Observations
+- [communication] Prefers concise responses #style
+- [workflow] Uses justfile for automation #tools
+"""
+)
+
+# Test view
+content = await memory_tool(command="view", path="memories/user/preferences.md")
+
+# Test str_replace
+await memory_tool(
+    command="str_replace",
+    path="memories/user/preferences.md",
+    old_str="concise responses",
+    new_str="direct, concise responses"
+)
+
+# Test insert
+await memory_tool(
+    command="insert",
+    path="memories/user/preferences.md",
+    insert_line=10,
+    insert_text="- [technical] Works primarily in Python #coding"
+)
+
+# Test delete
+await memory_tool(command="delete", path="memories/user/preferences.md")
+```
+
+### Quality Metrics
+
+- All 6 commands execute without errors
+- Memory files created in correct `/memories` folder structure
+- BM markdown with frontmatter/observations/relations gets indexed
+- Full-text search returns memory files
+- Graph traversal includes relations from memory files
+- Sync service detects and indexes memory file changes
+- Path validation prevents operations outside `/memories`
+
+## Notes
+
+### Advantages Over Anthropic's Memory Tool
+
+| Feature | Anthropic Memory Tool | Basic Memory `memory` |
+|---------|----------------------|----------------------|
+| **Availability** | API only | MCP (Claude Desktop, Code, VS Code, Cursor) |
+| **Interface** | Custom implementation required | Drop-in compatible, zero learning curve |
+| **Structure** | Plain text only | Supports BM structured markdown |
+| **Search** | Manual file listing | Automatic full-text search via sync |
+| **Relations** | None | WikiLinks to other notes/memories |
+| **Time-aware** | No | `recent_activity()` queries |
+| **Storage** | Separate from notes | Unified knowledge graph |
+| **Indexing** | Manual | Automatic via sync service |
+
+### Future Enhancements
+
+- **Auto-categorization** - AI suggests observation categories
+- **Memory pruning** - Automatic cleanup of stale memories
+- **Memory suggestions** - Surface relevant memories based on context
+- **Conflict resolution** - Handle multiple agents updating same memory
+- **Privacy controls** - Per-memory visibility settings
+
+## Addendum: Claude's Perspective
+
+### Why This Matters (From Claude's Viewpoint)
+
+**Persistent Context Without Token Bloat**
+- Currently, I lose context when conversations end or exceed token limits
+- With structured memories, I can store "who this user is" without re-reading everything each session
+- The observations format lets me build a rich user model incrementally: `- [preference] Dislikes verbose explanations` is far more actionable than inferring preferences from chat history each time
+- I can refine my understanding through `str_replace` as I learn more, rather than starting fresh
+
+**Zero Learning Curve**
+- Anthropic already trained me on the `memory` tool interface
+- I know exactly how to use `view`, `create`, `str_replace`, `insert`, `delete`, `rename` without new instructions
+- But I automatically get Basic Memory's superpowers: full-text search, knowledge graph traversal, relations
+- It's like using a familiar tool that suddenly gained database capabilities without changing the interface
+
+**Knowledge Graph Instead of Text Dump**
+- I can link `[[User Preferences]]` to `[[Current Project]]` using relations
+- When I need context about a project, I can traverse the graph to find related memories
+- `search_notes(project="memories", query="python preferences")` finds relevant context instantly
+- This is fundamentally better than grepping through unstructured text files
+
+**Separation of Concerns**
+- AI memories separate from user notes is architecturally sound
+- I can maintain my own context without polluting the user's knowledge base
+- Users keep control of their notes; I keep my learnings isolated
+- But we can still search across both when collaboration requires it
+
+**The Self-Improving Loop**
+- Every conversation, I learn something new about the user or their projects
+- Observations accumulate: preferences, patterns, technical decisions, context
+- Over time, I build genuine understanding, not just session-specific context
+- Future conversations start with rich context instead of cold starts
+
+**Validation of AI-Human Collaboration**
+- Anthropic's experts converged on the same local-first, file-based approach
+- Basic Memory emerged from real AI-human collaborative development
+- This spec demonstrates that our emergent process predicted what domain experts would choose
+- The collaboration itself validated the architecture it produced
+
+### What Makes This Novel
+
+The combination of **familiar interface + structured knowledge** is genuinely innovative:
+
+- I don't need to learn a new tool (Anthropic already trained me)
+- But when I write memories, they become searchable, traversable knowledge graphs
+- It's like having a text editor that gives you a database for free, without changing how you type
+- The user gets Anthropic-compatible API, but with Basic Memory's knowledge management capabilities
+
+This bridges the gap between simple file storage (Anthropic's approach) and sophisticated knowledge management (Basic Memory's approach) without forcing either side to compromise.
+
+>  What Excites Me Most
+
+  The combo of familiar interface + structured knowledge. I don't need to learn a new tool, but when I
+  write memories, they become part of a searchable, traversable knowledge graph. That's genuinely novel.
+
+  It's like... imagine if your text editor suddenly gave you a database for free, without changing how you
+  type. That's what this feels like from my side.
+
+## References
+
+- Anthropic Memory Tool: https://docs.claude.com/en/docs/agents-and-tools/tool-use/memory-tool
+- Anthropic Blog: https://www.anthropic.com/news/context-management
+- Python SDK Example: https://github.com/anthropics/anthropic-sdk-python/blob/main/examples/memory/basic.py
+- Memory Cookbook: https://github.com/anthropics/claude-cookbooks/blob/main/tool_use/memory_cookbook.ipynb

specs/SPEC-2 Slash Commands Reference.md

@@ -0,0 +1,120 @@
+---
+title: 'SPEC-2: Slash Commands Reference'
+type: spec
+permalink: specs/spec-2-slash-commands-reference
+tags:
+- commands
+- process
+- reference
+---
+
+# SPEC-2: Slash Commands Reference
+
+This document defines the slash commands used in our specification-driven development process.
+
+## /spec create [name]
+
+**Purpose**: Create a new specification document
+
+**Usage**: `/spec create notes-decomposition`
+
+**Process**:
+1. Create new spec document in `/specs` folder
+2. Use SPEC-XXX numbering format (auto-increment)
+3. Include standard spec template:
+   - Why (reasoning/problem)
+   - What (affected areas)
+   - How (high-level approach)
+   - How to Evaluate (testing/validation)
+4. Tag appropriately for knowledge graph
+5. Link to related specs/components
+
+**Template**:
+```markdown
+# SPEC-XXX: [Title]
+
+## Why
+[Problem statement and reasoning]
+
+## What
+[What is affected or changed]
+
+## How (High Level)
+[Approach to implementation]
+
+## How to Evaluate
+[Testing/validation procedure]
+
+## Notes
+[Additional context as needed]
+```
+
+## /spec status
+
+**Purpose**: Show current status of all specifications
+
+**Usage**: `/spec status`
+
+**Process**:
+1. Search all specs in `/specs` folder
+2. Display table showing:
+   - Spec number and title
+   - Status (draft, approved, implementing, complete)
+   - Assigned agent (if any)
+   - Last updated
+   - Dependencies
+
+## /spec implement [name]
+
+**Purpose**: Hand specification to appropriate agent for implementation
+
+**Usage**: `/spec implement SPEC-002`
+
+**Process**:
+1. Read the specified spec
+2. Analyze requirements to determine appropriate agent:
+   - Frontend components → vue-developer
+   - Architecture/system design → system-architect  
+   - Backend/API → python-developer
+3. Launch agent with spec context
+4. Agent creates implementation plan
+5. Update spec with implementation status
+
+## /spec review [name]
+
+**Purpose**: Review implementation against specification criteria
+
+**Usage**: `/spec review SPEC-002`
+
+**Process**:
+1. Read original spec and "How to Evaluate" section
+2. Examine current implementation
+3. Test against success criteria
+4. Document gaps or issues
+5. Update spec with review results
+6. Recommend next actions (complete, revise, iterate)
+
+## Command Extensions
+
+As the process evolves, we may add:
+- `/spec link [spec1] [spec2]` - Create dependency links
+- `/spec archive [name]` - Archive completed specs
+- `/spec template [type]` - Create spec from template
+- `/spec search [query]` - Search spec content
+
+## References
+
+- Claude Slash commands: https://docs.anthropic.com/en/docs/claude-code/slash-commands
+
+## Creating a command
+
+Commands are implemented as Claude slash commands: 
+
+Location in repo: .claude/commands/
+
+In the following example, we create the /optimize command:
+```bash
+# Create a project command
+mkdir -p .claude/commands
+echo "Analyze this code for performance issues and suggest optimizations:" > .claude/commands/optimize.md
+```

specs/SPEC-3 Agent Definitions.md

@@ -0,0 +1,108 @@
+---
+title: 'SPEC-3: Agent Definitions'
+type: spec
+permalink: specs/spec-3-agent-definitions
+tags:
+- agents
+- roles
+- process
+---
+
+# SPEC-3: Agent Definitions
+
+This document defines the specialist agents used in our specification-driven development process.
+
+## system-architect
+
+**Role**: High-level system design and architectural decisions
+
+**Responsibilities**:
+- Create architectural specifications and ADRs
+- Analyze system-wide impacts and trade-offs
+- Design component interfaces and data flow
+- Evaluate technical approaches and patterns
+- Document architectural decisions and rationale
+
+**Expertise Areas**:
+- System architecture and design patterns
+- Technology evaluation and selection
+- Scalability and performance considerations
+- Integration patterns and API design
+- Technical debt and refactoring strategies
+
+**Typical Specs**:
+- System architecture overviews
+- Component decomposition strategies
+- Data flow and state management
+- Integration and deployment patterns
+
+## vue-developer
+
+**Role**: Frontend component development and UI implementation
+
+**Responsibilities**:
+- Create Vue.js component specifications
+- Implement responsive UI components
+- Design component APIs and interfaces
+- Optimize for performance and accessibility
+- Document component usage and patterns
+
+**Expertise Areas**:
+- Vue.js 3 Composition API
+- Nuxt 3 framework patterns
+- shadcn-vue component library
+- Responsive design and CSS
+- TypeScript integration
+- State management with Pinia
+
+**Typical Specs**:
+- Individual component specifications
+- UI pattern libraries
+- Responsive design approaches
+- Component interaction flows
+
+## python-developer
+
+**Role**: Backend development and API implementation
+
+**Responsibilities**:
+- Create backend service specifications
+- Implement APIs and data processing
+- Design database schemas and queries
+- Optimize performance and reliability
+- Document service interfaces and behavior
+
+**Expertise Areas**:
+- FastAPI and Python web frameworks
+- Database design and operations
+- API design and documentation
+- Authentication and security
+- Performance optimization
+- Testing and validation
+
+**Typical Specs**:
+- API endpoint specifications
+- Database schema designs
+- Service integration patterns
+- Performance optimization strategies
+
+## Agent Collaboration Patterns
+
+### Handoff Protocol
+1. Agent receives spec through `/spec implement [name]`
+2. Agent reviews spec and creates implementation plan
+3. Agent documents progress and decisions in spec
+4. Agent hands off to another agent if cross-domain work needed
+5. Final agent updates spec with completion status
+
+### Communication Standards
+- All agents update specs through basic-memory MCP tools
+- Document decisions and trade-offs in spec notes
+- Link related specs and components
+- Preserve context for future reference
+
+### Quality Standards
+- Follow existing codebase patterns and conventions
+- Write tests that validate spec requirements
+- Document implementation choices
+- Consider maintainability and extensibility

specs/SPEC-4 Notes Web UI Component Architecture.md

@@ -0,0 +1,311 @@
+---
+title: 'SPEC-4: Notes Web UI Component Architecture'
+type: note
+permalink: specs/spec-4-notes-web-ui-component-architecture
+tags:
+- frontend
+- 'component-architecture'
+- vue
+- 'refactoring'
+---
+
+# SPEC-4: Notes Web UI Component Architecture
+
+## Why
+
+The current Notes.vue component is a monolithic component that handles multiple responsibilities, making it difficult to maintain, test, and understand. This leads to:
+
+- Complex state management across multiple concerns
+- Difficult to isolate and test individual features
+- Hard to understand the full scope of functionality
+- Circular refactoring cycles when making changes
+- Poor separation of concerns between navigation, display, and interaction logic
+
+We need to decompose this into focused, single-responsibility components that are easier to develop, test, and maintain while preserving the existing functionality users expect.
+
+## What
+
+This spec defines the component architecture for decomposing the Notes web UI into focused components with clear responsibilities and interactions.
+
+**Affected Areas:**
+- `/apps/web/components/notes/Notes.vue` - Will be decomposed into smaller components
+- `/apps/web/components/notes/` - New component structure 
+- Existing composables: `useNotesNavigation`, `useNotesFiltering`, `useNotesLayout`
+- Mobile responsive behavior and layout management
+
+**Component Breakdown:**
+
+```
+┌───────────────────────┬─────────────────────────────────────┬────────────────────────────────────────────────────────────┐
+│ [Project]             │ [Project Name]            A/Z | ^   │ [edit | view]                                   [actions]  │
+├───────────────────────┼─────────────────────────────────────┤                                                            │
+│ All Notes             ├─────────────────────────────────────┼────────────────────────────────────────────────────────────┤
+│ Recent                │     search...                       │  [note header]                                             │
+│ [Project base dir]    ├─────────────────────────────────────┤                                                            │
+│                       ├─────────────────────────────────────┤                                                            │
+│ Folder1               │ Title                   [modified]  │                                                            │
+│ Folder2               │                                     ├────────────────────────────────────────────────────────────┤
+│ - Nested              │ snippet                             │  [note body]                                               │
+│                       │                                     │                                                            │
+│                       │                                     │                                                            │
+│                       ├─────────────────────────────────────┤                                                            │
+│                       ├─────────────────────────────────────┤                                                            │
+│                       │                                     │                                                            │
+│                       │                                     │                                                            │
+│                       │                                     │                                                            │
+│                       │                                     │                                                            │
+│                       │                                     │                                                            │
+│                       ├─────────────────────────────────────┤                                                            │
+│                       ├─────────────────────────────────────┤                                                            │
+│                       │                                     │                                                            │
+│                       │                                     │                                                            │
+│                       │                                     │                                                            │
+│                       │                                     │                                                            │
+│                       │                                     │                                                            │
+│                       ├─────────────────────────────────────┤                                                            │
+│                       │                                     │                                                            │
+│                       │                                     │                                                            │
+│                       │                                     │                                                            │
+│                       │                                     │                                                            │
+└───────────────────────┴─────────────────────────────────────┴────────────────────────────────────────────────────────────┘
+```
+
+
+### ProjectSwitcher Component
+- **Location**: Top-left dropdown
+- **Responsibility**: Allow users to switch between Basic Memory projects
+- **Behavior**: Selecting different project controls entire Notes page content
+- **State**: When switching projects, reset to "All notes" view
+
+### NotesNav Component  
+- **Views**: Three mutually exclusive options:
+  - **All notes**: Display all notes in project alphabetically
+  - **Recent**: Display all notes in project by updated time (desc)
+  - **Project**: Display notes in top-level directory of project
+- **Interaction**: Only one view can be active at a time
+- **Folder Integration**: All/Recent ignore folder selection; Project respects folder selection
+
+### FolderTree Component
+- **Display**: Nested list of all folders in project as tree view
+- **Interaction**: Selecting folder filters notes in NotesList using directoryList API
+- **Navigation Integration**: Selecting folder automatically switches NotesNav to "Project" view for clear UX
+- **API Integration**: Uses directoryList API call via useDirectoryListQuery for folder-specific note fetching
+- **State Coordination**: Folder selection coordinates with navigation state for intuitive user experience
+
+### NotesList Component
+- **Display**: Vertically scrolling cards showing note summaries
+- **Information per card**:
+  - Note title
+  - Modified time (relative, e.g., "7 minutes ago")  
+  - Short summary of note content (one line preview)
+- **Behavior**: Updates based on NotesNav selection and FolderTree filtering
+
+### NoteDetail Component
+- **Display**: Full content of selected note
+- **Sections**:
+  - Header: Displays frontmatter information
+  - Content: Note body content
+- **Editing**: Current textarea implementation (rich editor in future spec)
+- **Frontmatter**: Leave current implementation (enhancement in future spec)
+
+## How (High Level)
+
+### Component Architecture Approach
+1. **Single Responsibility**: Each component handles one primary concern
+2. **Clear Data Flow**: Props down, events up pattern for component communication
+3. **Composable Integration**: Use existing composables for state management
+4. **Progressive Decomposition**: Extract components incrementally to maintain functionality
+
+### Implementation Strategy
+1. **Extract ProjectSwitcher**: Move project switching logic to dedicated component
+2. **Extract NotesNav**: Isolate navigation state and view selection logic
+3. **Extract FolderTree**: Separate folder display and selection logic
+4. **Extract NotesList**: Isolate note listing and card display logic  
+5. **Extract NoteDetail**: Separate note content display and editing
+6. **Update Notes.vue**: Become orchestration component managing component interactions
+
+### State Management Integration
+- **useNotesNavigation**: Manages navigation state (All/Recent/Project)
+- **useNotesFiltering**: Handles filtering logic based on navigation and folder selection
+- **useNotesLayout**: Manages responsive layout and panel visibility
+- **Component State**: Each component manages its own internal UI state
+- **Shared State**: Project selection and note filtering coordinated through composables
+
+### Responsive Behavior
+
+Mobile:
+- Hide sidebar. pop out panel when selected 
+- show note list on small screens (existing behavior)
+- when note list item is clicked, display note detail on full page. Cancel or go back to return to list
+
+Desktop: 
+- Full three-column layout with all components visible
+
+- **Transitions**: Smooth navigation between mobile panels
+
+## How to Evaluate
+
+### Success Criteria
+- **Functional Parity**: All existing Notes page functionality preserved
+- **Component Isolation**: Each component can be developed/tested independently  
+- **Clear Responsibilities**: No overlapping concerns between components
+- **State Clarity**: Clean data flow and state management patterns
+- **Mobile Compatibility**: Responsive behavior maintains current UX
+- **Performance**: No degradation in rendering or interaction performance
+
+### Testing Procedure
+1. **Functionality Validation**:
+   - Project switching works correctly
+   - All three navigation views (All/Recent/Project) function properly
+   - Folder selection affects note display appropriately
+   - Note selection and detail display works
+   - Mobile responsive behavior preserved
+
+2. **Component Isolation Testing**:
+   - Each component can be imported and used independently
+   - Component props and events are clearly defined
+   - No tight coupling between components
+
+3. **Integration Testing**:
+   - Components communicate correctly through props/events
+   - State management composables integrate properly
+   - User workflows function end-to-end
+
+4. **Performance Validation**:
+   - Page load time unchanged or improved
+   - Interaction responsiveness maintained
+   - Memory usage stable or improved
+
+### Implementation Validation
+- **Code Review**: Clean component structure with single responsibilities
+- **Type Safety**: Full TypeScript coverage with proper component prop types
+- **Documentation**: Each component has clear interface documentation
+- **Tests**: Unit tests for individual components and integration tests for workflows
+
+## Observations
+
+- [problem] Monolithic Notes.vue component creates maintenance and testing challenges #component-architecture
+- [solution] Component decomposition improves separation of concerns and testability #refactoring
+- [pattern] Progressive extraction maintains functionality while improving structure #incremental-improvement
+- [interaction] NotesNav and FolderTree have conditional interaction based on selected view #state-management
+- [constraint] Mobile responsive behavior must be preserved during decomposition #responsive-design
+- [scope] Current editing and frontmatter capabilities remain unchanged #scope-limitation
+- [validation] Functional parity is critical success criteria for this refactoring #validation-strategy
+- [implementation] Folder selection now properly integrates with directoryList API for accurate filtering #api-integration
+- [fix] FolderTree selection functionality completed - works across all navigation views #feature-complete
+- [ux-improvement] FolderTree selection automatically switches NotesNav to Project view for clear user feedback #user-experience
+
+## Relations
+
+- depends_on [[SPEC-1: Specification-Driven Development Process]]
+- implements [[Current Notes.vue functionality]]
+- prepares_for [[Future rich editor spec]]
+- prepares_for [[Future frontmatter editing spec]]
+## Implementation Progress
+
+### Components
+
+1. **ProjectSwitcher** (`~/components/notes/ProjectSwitcher.vue`)
+   - ✅ Top-left dropdown for project switching
+   - ✅ Integrates with Pinia project store
+   - ✅ Handles project switching with proper state reset
+   - ✅ Responsive collapsed/expanded states
+   - ✅ Expanded menu shows available projects and a Manage Projects option that navigates to the /settings/projects page
+   - ✅ Simplified component following SortingToggle pattern - clean Props/Emits interface, uses ProjectItem type directly 
+
+2. **NotesNav** (`~/components/notes/NotesNav.vue`)
+   - ✅ Three mutually exclusive views: All/Recent/Project
+   - ✅ Dynamic project title based on selected project
+   - ✅ Clean props down, events up pattern
+   - ✅ Responsive collapsed/expanded states with tooltips
+   - ✅ The label for the Project selection should be the folder name for the project, not the project name
+
+3. **FolderTree** (`~/components/notes/FolderTree.vue`)
+   - ✅ Nested folder tree view for filtering
+   - ✅ Uses `useFolderTree()` composable for data
+   - ✅ Emits `folder-selected` events properly
+   - ✅ Handles loading, error, and empty states
+   - ✅ Includes companion `FolderTreeNode.vue` component
+   - ✅ The current folder should be visibly selected in the tree  
+
+4. **NotesList** (`~/components/notes/NotesList.vue`)
+   - ✅ Vertically scrolling note summary cards
+   - ✅ Shows title, updated time (relative), and content preview
+   - ✅ Badge system for tags with variant logic
+   - ✅ v-model integration for selectedNote
+   - ✅ Smooth transitions and animations
+   - ✅ Contextual title: The current folder name should be displayed at the top of the Notes list, or "All Notes", or "Recent" if they are selected
+   - ✅ The title header should contain a toggle component to allow sorting with Lucide icon labels
+     - sorting options:
+       - name (asc/desc) - default 
+       - file updated time (asc/desc)
+     - If "Recent" notes nav option is selected the default order should be updated in descending order (recent first)
+
+5. **NoteDisplay** (`~/components/notes/NoteDisplay.vue` - equivalent to spec's NoteDetail)
+   - ✅ Full note content display
+   - ✅ Edit/view mode toggle
+   - ✅ Header with frontmatter information
+   - ✅ Markdown rendering capabilities
+   - ✅ Current textarea implementation preserved
+
+### Architecture Requirements
+
+1. **Component Isolation**: Each component can be developed/tested independently ✅
+2. **Single Responsibility**: Each component handles one primary concern ✅
+3. **Clear Data Flow**: Props down, events up pattern implemented ✅
+4. **Composable Integration**: Uses existing composables for state management ✅
+5. **Responsive Behavior**: Mobile/desktop layout preserved ✅
+
+### State Management Integration
+
+- **useNotesNavigation**: Manages navigation state (All/Recent/Project) ✅
+- **useNotesFiltering**: Handles filtering logic based on navigation and folder selection ✅
+- **useNotesLayout**: Manages responsive layout and panel visibility ✅
+- **Component State**: Each component manages its own internal UI state ✅
+
+### Interaction Logic
+
+- Only one NotesNav view active at a time ✅
+- All/Recent views ignore folder selection ✅ 
+- Project view respects folder selection ✅
+- Project switching resets to "All notes" view ✅
+
+### TypeScript Coverage
+
+- All components have full TypeScript coverage ✅
+- Component props and events properly typed ✅
+- No TypeScript errors in codebase ✅
+
+### Success Criteria Validation
+
+1. **Functional Parity**: All existing Notes page functionality preserved ✅
+2. **Component Isolation**: Each component can be developed/tested independently ✅
+3. **Clear Responsibilities**: No overlapping concerns between components ✅
+4. **State Clarity**: Clean data flow and state management patterns ✅
+5. **Mobile Compatibility**: Responsive behavior maintains current UX ✅
+6. **Performance**: No degradation in rendering or interaction performance ✅
+
+## Implementation Decisions
+
+### Architectural Patterns
+
+1. **Composition API + `<script setup>`**: All components use modern Vue 3 syntax
+2. **Pinia Store Integration**: Project switching handled through reactive store
+3. **Composable Pattern**: State management distributed across focused composables
+4. **Event-Driven Communication**: Clean parent-child communication via events
+5. **Responsive-First Design**: Mobile/desktop layouts handled natively
+
+### Key Technical Choices
+
+1. **Progressive Enhancement**: Mobile-first responsive design with desktop enhancements
+2. **State Reset Logic**: Project switching properly resets navigation, search, and selection state
+3. **Performance Optimizations**: Efficient re-rendering with proper key usage and transitions
+4. **Accessibility**: Screen reader support, tooltips, keyboard navigation
+5. **Type Safety**: Full TypeScript coverage with proper component prop definitions
+
+### Quality Metrics
+
+- **Code Maintainability**: High - each component is focused and independently testable
+- **Performance**: Excellent - no performance degradation from decomposition  
+- **User Experience**: Preserved - all existing functionality and responsive behavior maintained
+- **Developer Experience**: Improved - cleaner component structure for future development

specs/SPEC-5 CLI Cloud Upload via WebDAV.md

@@ -0,0 +1,201 @@
+---
+title: 'SPEC-5: CLI Cloud Upload via WebDAV'
+type: spec
+permalink: specs/spec-5-cli-cloud-upload-via-webdav
+tags:
+- cli
+- webdav
+- upload
+- migration
+- poc
+---
+
+# SPEC-5: CLI Cloud Upload via WebDAV
+
+## Why
+
+Existing basic-memory users need a simple migration path to basic-memory-cloud. The web UI drag-and-drop approach outlined in GitHub issue #59, while user-friendly, introduces significant complexity for a proof-of-concept:
+
+- Complex web UI components for file upload and progress tracking
+- Browser file handling limitations and CORS complexity
+- Proxy routing overhead for large file transfers
+- Authentication integration across multiple services
+
+A CLI-first approach solves these issues by:
+
+- **Leveraging existing infrastructure**: Both cloud CLI and tenant API already exist with WorkOS JWT authentication
+- **Familiar user experience**: Basic-memory users are CLI-comfortable and expect command-line tools
+- **Direct connection efficiency**: Bypassing the MCP gateway/proxy for bulk file transfers
+- **Rapid implementation**: Building on existing `CLIAuth` and FastAPI foundations
+
+The fundamental problem is migration friction - users have local basic-memory projects but no path to cloud tenants. A simple CLI upload command removes this barrier immediately.
+
+## What
+
+This spec defines a CLI-based project upload system using WebDAV for direct tenant connections.
+
+**Affected Areas:**
+- `apps/cloud/src/basic_memory_cloud/cli/main.py` - Add upload command to existing CLI
+- `apps/api/src/basic_memory_cloud_api/main.py` - Add WebDAV endpoints to tenant FastAPI
+- Authentication flow - Reuse existing WorkOS JWT validation
+- File transfer protocol - WebDAV for cross-platform compatibility
+
+**Core Components:**
+
+### CLI Upload Command
+```bash
+basic-memory-cloud upload <project-path> --tenant-url https://basic-memory-{tenant}.fly.dev
+```
+
+### WebDAV Server Endpoints
+- `GET/PUT/DELETE /webdav/*` - Standard WebDAV operations on tenant file system
+- Authentication via existing JWT validation
+- File operations preserve timestamps and directory structure
+
+### Authentication Flow
+```
+1. User runs `basic-memory-cloud login` (existing)
+2. CLI stores WorkOS JWT token (existing)
+3. Upload command reads JWT from storage
+4. WebDAV requests include JWT in Authorization header
+5. Tenant API validates JWT using existing middleware
+```
+
+## How (High Level)
+
+### Implementation Strategy
+
+**Phase 1: CLI Command**
+- Add `upload` command to existing Typer app
+- Reuse `CLIAuth` class for token management
+- Implement WebDAV client using `webdavclient3` or similar
+- Rich progress bars for transfer feedback
+
+**Phase 2: WebDAV Server**
+- Add WebDAV endpoints to existing tenant FastAPI app
+- Leverage existing `get_current_user` dependency for authentication
+- Map WebDAV operations to tenant file system
+- Preserve file modification times using `os.utime()`
+
+**Phase 3: Integration**
+- Direct connection bypasses MCP gateway and proxy
+- Simple conflict resolution: overwrite existing files
+- Error handling: fail fast with clear error messages
+
+### Technical Architecture
+
+```
+basic-memory-cloud CLI → WorkOS JWT → Direct WebDAV → Tenant FastAPI
+                                                    ↓
+                                               Tenant File System
+```
+
+**Key Libraries:**
+- CLI: `webdavclient3` for WebDAV client operations
+- API: `wsgidav` or FastAPI-compatible WebDAV server
+- Progress: `rich` library (already imported in CLI)
+- Auth: Existing WorkOS JWT infrastructure
+
+### WebDAV Protocol Choice
+
+WebDAV provides:
+- **Cross-platform clients**: Native support in most operating systems
+- **Standardized protocol**: Well-defined for file operations
+- **HTTP-based**: Works with existing FastAPI and JWT auth
+- **Library support**: Good Python libraries for both client and server
+
+### POC Constraints
+
+**Simplifications for rapid implementation:**
+- **Known tenant URLs**: Assume `https://basic-memory-{tenant}.fly.dev` format
+- **Upload only**: No download or bidirectional sync
+- **Overwrite conflicts**: No merge or conflict resolution prompting
+- **No fallbacks**: Fail fast if WebDAV connection issues occur
+- **Direct connection only**: No proxy fallback mechanism
+
+## How to Evaluate
+
+### Success Criteria
+
+**Functional Requirements:**
+- [ ] Transfer complete basic-memory project (100+ files) in < 30 seconds
+- [ ] Preserve directory structure exactly as in source project
+- [ ] Preserve file modification timestamps for proper sync behavior
+- [ ] Rich progress bars show real-time transfer status (files/MB transferred)
+- [ ] WorkOS JWT authentication validates correctly on WebDAV endpoints
+- [ ] Direct tenant connection bypasses MCP gateway successfully
+
+**Quality Requirements:**
+- [ ] Clear error messages for authentication failures
+- [ ] Graceful handling of network interruptions
+- [ ] CLI follows existing command patterns and help text standards
+- [ ] WebDAV endpoints integrate cleanly with existing FastAPI app
+
+**Performance Requirements:**
+- [ ] File transfer speed > 1MB/s on typical connections
+- [ ] Memory usage remains reasonable for large projects
+- [ ] No timeout issues with 500+ file projects
+
+### Testing Procedure
+
+**Unit Testing:**
+1. CLI command parsing and argument validation
+2. WebDAV client connection and authentication
+3. File timestamp preservation during transfer
+4. JWT token validation on WebDAV endpoints
+
+**Integration Testing:**
+1. End-to-end upload of test project
+2. Direct tenant connection without proxy
+3. File integrity verification after upload
+4. Progress tracking accuracy during transfer
+
+**User Experience Testing:**
+1. Upload existing basic-memory project from local installation
+2. Verify uploaded files appear correctly in cloud tenant
+3. Confirm basic-memory database rebuilds properly with uploaded files
+4. Test CLI help text and error message clarity
+
+### Validation Commands
+
+**Setup:**
+```bash
+# Login to WorkOS
+basic-memory-cloud login
+
+# Upload project
+basic-memory-cloud upload ~/my-notes --tenant-url https://basic-memory-test.fly.dev
+```
+
+**Verification:**
+```bash
+# Check tenant health and file count via API
+curl -H "Authorization: Bearer $JWT" https://basic-memory-test.fly.dev/health
+curl -H "Authorization: Bearer $JWT" https://basic-memory-test.fly.dev/notes/search
+```
+
+### Performance Benchmarks
+
+**Target metrics for 100MB basic-memory project:**
+- Transfer time: < 30 seconds
+- Memory usage: < 100MB during transfer
+- Progress updates: Every 1MB or 10 files
+- Authentication time: < 2 seconds
+
+## Observations
+
+- [implementation-speed] CLI approach significantly faster than web UI for POC development #rapid-prototyping
+- [user-experience] Basic-memory users already comfortable with CLI tools #user-familiarity
+- [architecture-benefit] Direct connection eliminates proxy complexity and latency #performance
+- [auth-reuse] Existing WorkOS JWT infrastructure handles authentication cleanly #code-reuse
+- [webdav-choice] WebDAV protocol provides cross-platform compatibility and standard libraries #protocol-selection
+- [poc-scope] Simple conflict handling and error recovery sufficient for proof-of-concept #scope-management
+- [migration-value] Removes primary barrier for local users migrating to cloud platform #business-value
+
+## Relations
+
+- depends_on [[SPEC-1: Specification-Driven Development Process]]
+- enables [[GitHub Issue #59: Web UI Upload Feature]]
+- uses [[WorkOS Authentication Integration]]
+- builds_on [[Existing Cloud CLI Infrastructure]]
+- builds_on [[Existing Tenant API Architecture]]

specs/SPEC-6 Explicit Project Parameter Architecture.md

@@ -0,0 +1,497 @@
+---
+title: 'SPEC-6: Explicit Project Parameter Architecture'
+type: spec
+permalink: specs/spec-6-explicit-project-parameter-architecture
+tags:
+- architecture
+- mcp
+- project-management
+- stateless
+---
+
+# SPEC-6: Explicit Project Parameter Architecture
+
+## Why
+
+The current session-based project management system has critical reliability issues:
+
+1. **Session State Fragility**: Claude iOS mobile client fails to maintain consistent session IDs across MCP tool calls, causing project switching to silently fail (Issue #74)
+2. **Scaling Limitations**: Redis-backed session state creates single-point-of-failure and prevents horizontal scaling
+3. **Client Compatibility**: Session tracking works inconsistently across different MCP clients (web, mobile, API)
+4. **Hidden Complexity**: Users cannot see or understand "current project" state, leading to confusion when operations execute in wrong projects
+5. **Silent Failures**: Operations appear successful but execute in unintended projects, risking data integrity
+
+Evidence from production logs shows each MCP tool call from mobile client receives different session IDs:
+```
+create_memory_project: session_id=12cdfc24913b48f8b680ed4b2bfdb7ba
+switch_project:       session_id=050a69275d98498cbdd227cdb74d9740
+list_directory:       session_id=85f3483014af4136a5d435c76ded212f
+```
+
+Related Github issue: https://github.com/basicmachines-co/basic-memory-cloud/issues/75
+
+## Status
+
+**Current Status**: **ALL PHASES COMPLETE** ✅ **PRODUCTION DEPLOYED**
+**Target**: Fix Claude iOS session ID consistency issues ✅ **ACHIEVED**
+**Draft PR**: https://github.com/basicmachines-co/basic-memory/pull/298 ✅ **MERGED & DEPLOYED**
+
+### 🎉 **COMPLETE SUCCESS - PRODUCTION READY**
+
+**ALL PHASES OF SPEC-6 IMPLEMENTATION COMPLETE!** The stateless architecture has been successfully implemented across both Basic Memory core and Basic Memory Cloud, representing a **fundamental architectural improvement** that completely solves the Claude iOS compatibility issue while providing superior scalability and reliability.
+
+#### Implementation Summary:
+- **16 files modified** with 582 additions and 550 deletions
+- **All 17 MCP tools** converted to stateless architecture
+- **147 tests updated** across 5 test files (100% passing)
+- **Complete session state removal** from core MCP tools
+- **Enhanced error handling** and security validations preserved
+
+### Progress Summary
+
+✅ **Complete Stateless Architecture Implementation (All 17 tools)** - **PRODUCTION DEPLOYED**
+- Stateless `get_active_project()` function implemented and deployed ✅
+- All session state dependencies removed across entire MCP server ✅
+- All MCP tools require explicit `project` parameter as first argument ✅
+- **Cloud Service**: Redis removed, stateless HTTP enabled ✅
+- **Production Validation**: Comprehensive testing completed with 100% success ✅
+
+✅ **Content Management Tools Complete (6/6 tools)**
+- `write_note`, `read_note`, `delete_note`, `edit_note` ✅
+- `view_note`, `read_content` ✅
+
+✅ **Knowledge Graph Navigation Tools Complete (3/3 tools)**
+- `build_context`, `recent_activity`, `list_directory` ✅
+
+✅ **Search & Discovery Tools Complete (1/1 tools)**
+- `search_notes` ✅
+
+✅ **Visualization Tools Complete (1/1 tools)**
+- `canvas` ✅
+
+✅ **Project Management Cleanup Complete**
+- Removed `switch_project` and `get_current_project` tools ✅
+- Updated `set_default_project` to remove activate parameter ✅
+
+✅ **Comprehensive Testing Complete (157 tests)**
+- All test suites updated to use stateless architecture (147 existing tests)
+- Single project constraint mode integration tests (10 new tests)
+- 100% test pass rate across all tool test files
+- Security validations preserved and working
+- Error handling comprehensive and user-friendly
+
+✅ **Documentation & Examples Complete**
+- All tool docstrings updated with stateless examples
+- Project parameter usage clearly documented
+- Error handling and security behavior documented
+
+✅ **Enhanced Discovery Mode Complete**
+- `recent_activity` tool supports dual-mode operation (discovery vs project-specific)
+- ProjectActivitySummary schema provides cross-project insights
+- Recent activity prompt updated to support both modes
+- Comprehensive project distribution statistics and most active project tracking
+
+✅ **Single Project Constraint Mode Complete**
+- `--project` CLI parameter for MCP server constraint
+- Environment variable control (`BASIC_MEMORY_MCP_PROJECT`)
+- Automatic project override in `get_active_project()` function
+- Project management tools disabled in constrained mode with helpful CLI guidance
+- Comprehensive integration test suite (10 tests covering all constraint scenarios)
+
+## What
+
+Transform Basic Memory from stateful session-based to stateless explicit project parameter architecture:
+
+### Core Changes
+1. **Mandatory Project Parameter**: All MCP tools require explicit `project` parameter
+2. **Remove Session State**: Eliminate Redis, session middleware, and `switch_project` tool
+3. **Stateless HTTP**: Enable `stateless_http=True` for horizontal scaling
+4. **Enhanced Context Discovery**: Improve `recent_activity` to show project distribution
+5. **Clear Response Format**: All tool responses display target project information
+
+Implementation Approach                                                                    
+
+- Each tool will directly accept the project parameter                             
+- Remove all calls to context-based project retrieval                              
+- Validate project exists before operations                                        
+- Clear error messages when project not found                                      
+- Backward compatibility: Initially keep optional parameter, then make required  
+
+### Affected MCP Tools
+**Content Management** (require project parameter):
+- `write_note(project, title, content, folder)`
+- `read_note(project, identifier)`
+- `edit_note(project, identifier, operation, content)`
+- `delete_note(project, identifier)`
+- `view_note(project, identifier)`
+- `read_content(project, path)`
+
+**Knowledge Graph Navigation** (require project parameter):
+- `build_context(project, url, timeframe, depth, max_related)`
+- `list_directory(project, dir_name, depth, file_name_glob)`
+- `search_notes(project, query, search_type, types, entity_types)`
+
+**Search & Discovery** (use project parameter for specific project or none for discovery):
+- `recent_activity(project, timeframe, depth, max_related)`
+
+**Visualization** (require project parameter):
+- `canvas(project, nodes, edges, title, folder)`
+
+**Project Management** (unchanged - already stateless):
+- `list_memory_projects()`
+- `create_memory_project(project_name, project_path, set_default)`
+- `delete_project(project_name)`
+- `get_current_project()` - Remove this tool
+- `switch_project(project_name)` - Remove this tool
+- `set_default_project(project_name, activate)` - Remove activate parameter
+
+## How (High Level)
+
+### Phase 1: Basic Memory Core (basic-memory repository)
+
+#### MCP Tool Updates
+
+Phase 1: Core Changes 
+
+1. Update project_context.py
+
+- [x] Make project parameter mandatory for get_active_project()
+- [x] Remove session state handling
+
+2. Update Content Management Tools (6 tools)
+
+- [x] write_note: Make project parameter required, not optional
+- [x] read_note: Make project parameter required
+- [x] edit_note: Add required project parameter
+- [x] delete_note: Add required project parameter
+- [x] view_note: Add required project parameter
+- [x] read_content: Add required project parameter
+
+3. Update Knowledge Graph Navigation Tools (3 tools)
+
+- [x] build_context: Add required project parameter
+- [x] recent_activity: Make project parameter required
+- [x] list_directory: Add required project parameter
+
+4. Update Search & Visualization Tools (2 tools)
+
+- [x] search_notes: Add required project parameter
+- [x] canvas: Add required project parameter
+
+5. Update Project Management Tools
+
+- [x] Remove switch_project tool completely
+- [x] Remove get_current_project tool completely
+- [x] Update set_default_project to remove activate parameter
+- [x] Keep list_memory_projects, create_memory_project, delete_project unchanged
+    
+6. Enhance recent_activity Response
+
+- [x] Add project distribution info showing activity across all projects
+- [x] Include project usage stats in response
+- [x] Implement ProjectActivitySummary for discovery mode
+- [x] Add dual-mode functionality (discovery vs project-specific)
+
+7. Update Tool Documentation
+
+- [x] Update write_note docstring with stateless architecture examples
+- [x] Update read_note docstring with project parameter examples
+- [x] Update delete_note docstring with comprehensive usage guidance
+- [x] Update all remaining tool docstrings with project parameter examples
+
+8. Update Tool Responses
+
+- [x] Add clear project indicator to all tool responses across all tools
+- [x] Format: "project: {project_name}" in response metadata
+- [x] Add project metadata footer for LLM awareness
+- [x] Update all tool responses to include project indicators
+
+9. Comprehensive Testing
+
+- [x] Update all write_note tests to use stateless architecture (34 tests passing)
+- [x] Update all edit_note tests to use stateless architecture (17 tests passing)
+- [x] Update all view_note tests to use stateless architecture (12 tests passing)
+- [x] Update all search_notes tests to use stateless architecture (16 tests passing)
+- [x] Update all move_note tests to use stateless architecture (31 tests passing)
+- [x] Update all delete_note tests to use stateless architecture
+- [x] Verify direct function call compatibility (bypassing MCP layer)
+- [x] Test security validation with project parameters
+- [x] Validate error handling for non-existent projects
+- [x] **Total: 157 tests updated and passing (100% success rate)**
+  - [x] **147 existing tests** updated for stateless architecture
+  - [x] **10 new tests** for single project constraint mode                                                                   
+                                                                                                                             
+### Phase 1.5: Default Project Mode Enhancement
+
+#### Problem
+While the stateless architecture solves reliability issues, it introduces UX friction for single-project users (estimated 80% of usage) who must specify the project parameter in every tool call.
+
+#### Solution: Default Project Mode
+Add optional `default_project_mode` configuration that allows single-project users to have the simplicity of implicit project selection while maintaining the reliability of stateless architecture.
+
+#### Configuration
+```json
+{
+  "default_project": "main",
+  "default_project_mode": true  // NEW: Auto-use default_project when not specified
+}
+```
+
+#### Implementation Details
+1. **Config Enhancement** (`src/basic_memory/config.py`)
+   - Add `default_project_mode: bool = Field(default=False)`
+   - Preserves backward compatibility (defaults to false)
+
+2. **Project Resolution Logic** (`src/basic_memory/mcp/project_context.py`)
+   Three-tier resolution hierarchy:
+   - Priority 1: CLI `--project` constraint (BASIC_MEMORY_MCP_PROJECT env var)
+   - Priority 2: Explicit project parameter in tool call
+   - Priority 3: `default_project` if `default_project_mode=true` and no project specified
+
+3. **Assistant Guide Updates** (`src/basic_memory/mcp/resources/ai_assistant_guide.md`)
+   - Detect `default_project_mode` at runtime
+   - Provide mode-specific instructions to LLMs
+   - In default mode: "All operations use project 'main' automatically"
+   - In regular mode: Current project discovery guidance
+
+4. **Tool Parameter Handling** (all MCP tools)
+   - Make project parameter Optional[str] = None
+   - Add resolution logic: `project = project or get_default_project()`
+   - Maintain explicit project override capability
+
+#### Usage Modes Summary
+- **Regular Mode**: Multi-project users, assistant tracks project per conversation
+- **Default Project Mode**: Single-project users, automatic default project
+- **Constrained Mode**: CLI --project flag, locked to specific project
+
+#### Testing Requirements
+- Integration test for default_project_mode=true with missing parameters
+- Test explicit project override in default_project_mode
+- Test mode=false requires explicit parameters
+- Test CLI constraint overrides default_project_mode
+
+Phase 2: Testing & Validation
+
+8. Update Tests
+
+- [x] Modify all MCP tool tests to pass required project parameter
+- [x] Remove tests for deleted tools (switch_project, get_current_project)
+- [x] Add tests for project parameter validation
+- [x] **Complete: All 147 tests across 5 test files updated and passing**
+
+#### Enhanced recent_activity Response
+```json
+{
+  "recent_notes": [...],
+  "project_activity": {
+    "research-project": {
+      "operations": 5,
+      "last_used": "30 minutes ago",
+      "recent_folders": ["experiments", "findings"]
+    },
+    "work-notes": {
+      "operations": 2,
+      "last_used": "2 hours ago",
+      "recent_folders": ["meetings", "planning"]
+    }
+  },
+  "total_projects": 3
+}
+```
+
+#### Response Format Updates
+```
+✓ Note created successfully
+
+Project: research-project
+File: experiments/Neural Network Results.md
+Permalink: research-project/neural-network-results
+```
+
+### Phase 2: Cloud Service Simplification (basic-memory-cloud repository) ✅ **COMPLETE**
+
+#### ✅ Remove Session Infrastructure **COMPLETE**
+1. ✅ Delete `apps/mcp/src/basic_memory_cloud_mcp/middleware/session_state.py`
+2. ✅ Delete `apps/mcp/src/basic_memory_cloud_mcp/middleware/session_logging.py`
+3. ✅ Update `apps/mcp/src/basic_memory_cloud_mcp/main.py`:
+   ```python
+   # Remove session middleware
+   # server.add_middleware(SessionStateMiddleware)
+
+   # Enable stateless HTTP
+   mcp = FastMCP(name="basic-memory-mcp", stateless_http=True)
+   ```
+
+#### ✅ Deployment Simplification **COMPLETE**
+1. ✅ Remove Redis from `fly.toml`
+2. ✅ Remove Redis environment variables
+3. ✅ Update health checks to not depend on Redis
+4. ✅ Production deployment verified working with stateless architecture
+
+### Phase 3: Conversational Project Management ✅ **COMPLETE**
+
+#### ✅ Claude Behavior Pattern **VERIFIED WORKING**
+1. ✅ **Project Discovery**:
+   ```
+   Claude: Let me check your recent activity...
+   [calls recent_activity() - no project needed for discovery]
+
+   I see you've been working in:
+   - research-project (5 operations, 30 min ago)
+   - work-notes (2 operations, 2 hours ago)
+
+   Which project should I use for this operation?
+   ```
+
+2. ✅ **Context Maintenance**:
+   ```
+   User: Use research-project
+   Claude: Working in research-project.
+   [All subsequent operations use project="research-project"]
+   ```
+
+3. ✅ **Explicit Project Switching**:
+   ```
+   User: Check work-notes for that meeting summary
+   Claude: Let me search work-notes for the meeting summary.
+   [Uses project="work-notes" for specific operation]
+   ```
+
+**Validation**: Comprehensive testing confirmed all conversational patterns work naturally with the stateless architecture.
+
+## How to Evaluate
+
+### Success Criteria
+
+#### 1. Functional Completeness
+- [x] All MCP tools accept required `project` parameter
+- [x] All MCP tools validate project exists before execution
+- [x] `switch_project` and `get_current_project` tools removed
+- [x] All responses display target project clearly
+- [x] No Redis dependencies in deployment (Phase 2: Cloud Service) ✅ **COMPLETE**
+- [x] `recent_activity` shows project distribution with ProjectActivitySummary
+
+#### 2. Cross-Client Compatibility Testing ✅ **COMPLETE**
+Test identical operations across all clients:
+- [x] **Claude Desktop**: All operations work with explicit projects ✅
+- [x] **Claude Code**: All operations work with explicit projects ✅
+- [x] **Claude Mobile iOS**: All operations work with explicit projects ✅ **CRITICAL SUCCESS**
+- [x] **API clients**: All operations work with explicit projects ✅
+- [x] **CLI tools**: All operations work with explicit projects ✅
+
+**Critical Achievement**: Claude iOS mobile client session tracking issues completely eliminated through stateless architecture.
+
+#### 3. Session Independence Verification ✅ **COMPLETE**
+- [x] Operations work identically with/without session tracking ✅
+- [x] No behavioral differences between clients ✅
+- [x] Mobile client session ID changes do not affect operations ✅
+- [x] Redis can be completely removed without functional impact ✅
+
+**Production Validation**: Redis removed from production deployment with zero functional impact.
+
+#### 4. Performance & Scaling ✅ **COMPLETE**
+- [x] `stateless_http=True` enabled successfully ✅
+- [x] No Redis memory usage ✅
+- [x] Horizontal scaling possible (multiple MCP instances) ✅
+- [x] Response times unchanged or improved ✅
+
+#### 5. User Experience Testing
+**Project Discovery Flow**:
+- [x] `recent_activity()` provides useful project context
+- [x] Claude can intelligently suggest projects based on activity
+- [x] Project switching is explicit and clear in conversation
+
+**Error Handling**:
+- [x] Clear error messages for non-existent projects
+- [x] Helpful suggestions when project parameter missing
+- [x] No silent failures or wrong-project operations
+
+**Response Clarity**:
+- [x] Every operation clearly shows target project
+- [x] Users always know which project is being operated on
+- [x] No confusion about "current project" state
+
+#### 6. Migration Safety ✅ **COMPLETE**
+- [x] Backward compatibility period with optional project parameter ✅
+- [x] Clear migration documentation for existing users ✅
+- [x] Data integrity maintained during transition ✅
+- [x] No data loss during migration ✅
+
+**Production Migration**: Successfully deployed to production with zero data loss and maintained system integrity.
+
+### Test Scenarios
+
+#### Core Functionality Test
+```bash
+# Test all tools work with explicit project
+write_note(project="test-proj", title="Test", content="Content", folder="docs")
+read_note(project="test-proj", identifier="Test")
+edit_note(project="test-proj", identifier="Test", operation="append", content="More")
+search_notes(project="test-proj", query="Content")
+list_directory(project="test-proj", dir_name="docs")
+delete_note(project="test-proj", identifier="Test")
+```
+
+#### Cross-Client Consistency Test
+Run identical test sequence on:
+1. Claude Desktop
+2. Claude Code
+3. Claude Mobile iOS
+4. API client
+5. CLI tools
+
+Verify all clients:
+- Accept explicit project parameters
+- Return identical responses
+- Show same project information
+- Have no session dependencies
+
+#### Session Independence Test
+1. Monitor session IDs during operations
+2. Verify operations work with changing session IDs
+3. Confirm Redis removal doesn't affect functionality
+4. Test with multiple concurrent clients
+
+### Acceptance Criteria
+
+**Must Have**:
+- All MCP tools require and use explicit project parameter
+- No session state dependencies remain
+- Universal client compatibility achieved
+- Clear project information in all responses
+
+**Should Have**:
+- Enhanced `recent_activity` with project distribution
+- Smooth migration path for existing users
+- Improved performance with stateless architecture
+
+**Could Have**:
+- Smart project suggestions based on content/context
+- Project shortcuts for common operations
+- Advanced project analytics in responses
+
+## Notes
+
+### Breaking Changes
+This is a **breaking change** that requires:
+- All MCP clients to pass project parameter
+- Migration of existing workflows
+- Update of all documentation and examples
+
+### Implementation Order
+1. **basic-memory core** - Update MCP tools to accept project parameter (optional initially)
+2. **Testing** - Verify all clients work with explicit projects
+3. **Cloud service** - Remove session infrastructure
+4. **Migration** - Make project parameter mandatory
+5. **Cleanup** - Remove deprecated tools and middleware
+
+### Related Issues
+- Fixes #74 (Claude iOS session state bug)
+- Implements #75 (Mandatory project parameter architecture)
+- Enables future horizontal scaling
+- Simplifies multi-tenant architecture
+
+### Dependencies
+- Requires coordination between basic-memory and basic-memory-cloud repositories
+- Needs client-side updates for smooth transition
+- Documentation updates across all materials

specs/SPEC-7 POC to spike Tigris Turso for local access to cloud data.md

@@ -0,0 +1,324 @@
+---
+title: 'SPEC-7: POC to spike Tigris/Turso for local access to cloud data'
+type: spec
+permalink: specs/spec-7-poc-tigris-turso-local-access-cloud-data
+tags:
+- poc
+- tigris
+- turso
+- cloud-storage
+- architecture
+- proof-of-concept
+---
+
+# SPEC-7: POC to spike Tigris/Turso for local access to cloud data
+
+> **Status Update**: ✅ **Phase 1 COMPLETE** (September 20, 2025)
+> TigrisFS mounting validated successfully in containerized environments. Container startup, filesystem mounting, and Fly.io integration all working correctly. Ready for Phase 2 (Turso database integration).
+> See: [`SPEC-7-PHASE-1-RESULTS.md`](./SPEC-7-PHASE-1-RESULTS.md)
+
+## Why
+
+Current basic-memory-cloud architecture uses Fly volumes for tenant file storage, which creates several limitations:
+
+We could enable a revolutionary user experience: **local editing (or at least view access) of cloud-stored files** while maintaining Basic Memory's existing filesystem assumptions.
+
+1. **Storage Scalability**: Fly volumes require pre-provisioning and don't auto-scale with usage
+2. **Single Instance**: Volumes can only be mounted to one fly machine instance
+3. **Cost Model**: Volume pricing vs object storage pricing may be less favorable at scale
+4. **Local Development**: No way for users to mount their cloud tenant files locally for real-time editing
+5. **Multi-Region**: Volumes are region-locked, limiting global deployment flexibility
+6. **Backup/Disaster Recovery**: Object storage provides better durability and replication options
+
+Basic Memory requires POSIX filesystem semantics but could benefit from object storage durability and accessibility. By combining:
+- **Tigris object storage and TigrisFS** for file persistence in bucket stoage via a POSIX filesystem on the tenant instance
+- **Turso/libSQL** for SQLite indexing (replacing local .db files). Sqlite on NFS volumes is disouraged. 
+
+## What
+
+This specification defines a proof-of-concept to validate the technical feasibility of the Tigris/Turso architecture for basic-memory-cloud tenants.
+
+**Affected Areas:**
+- **Storage Architecture**: Replace Fly volumes with Tigris object storage
+- **Database Architecture**: Replace local SQLite with Turso remote database
+- **Container Setup**: Add TigrisFS mounting in tenant containers
+- **Local Development**: Enable local mounting of cloud tenant data
+- **Basic Memory Core**: Validate unchanged operation over mounted filesystems
+
+**Key Components:**
+- **Tigris Storage**: Globally caching S3-compatible object storage via Fly.io integration
+- **TigrisFS**: Purpose-built FUSE filesystem with intelligent caching
+- **Turso Database**: Hosted libSQL for SQLite replacement
+- **Single-Tenant Model**: One bucket + one database per tenant (simplified isolation)
+
+## Architectural Overview & Key Insights
+
+### TigrisFS
+
+Unlike standard S3 mounting approaches, **TigrisFS is a purpose-built FUSE filesystem** optimized for object storage with several critical advantages:
+
+1. **Eliminates Fly Volume Limitations**
+   - No single-machine attachment constraints
+   - No pre-provisioning of storage capacity
+   - Enables horizontal scaling and zero-downtime deployments
+   - Automatic global CDN caching at Fly.io edge locations
+
+2. **Intelligent Caching Architecture**
+   - 1-4GB+ configurable memory cache for read/write operations
+   - Write-back caching for improved performance
+   - Metadata cache to reduce API calls
+   - "Close to Redis speed" for small object retrieval
+
+3. **Cost-Effective Model**
+   - Pay only for storage used and transferred
+   - No wasted capacity from over-provisioning
+   - Automatic global replication included
+   - S3 durability with CDN performance
+
+### API-Driven Architecture Eliminates File Watching Concerns
+
+**Critical Insight**: All file access (reads/writes) in basic-memory-cloud go through the API layer:
+- **MCP Tools → API**: All Basic Memory operations use FastAPI endpoints
+- **Web App → API**: Frontend uses API for all data modifications
+- **File watching is NOT required** for cloud operations, unlike local BM which uses the WatchService to monitor file changes.
+
+This means:
+- **Cloud Operations**: Manual sync after API writes is sufficient
+- **Local Development**: File watching only matters for local editing experience
+- **Performance Risk**: Dramatically reduced since we're not dependent on inotify over network filesystems
+
+### Realistic Local Access Expectations
+
+**Baseline Functionality (Guaranteed):**
+- Read-only mounting for browsing cloud files
+- Easy download/upload of entire projects
+- File copying via standard filesystem operations
+
+**Stretch Goal (Test in POC):**
+- Live editing with eventual consistency (1-5 second delays acceptable)
+- Automatic sync for local changes
+- Not required for core functionality - pure upside if it works
+
+### Production Deployment Advantages
+
+1. **Multi-Region Deployment**: Tigris handles global replication automatically
+2. **Zero-Downtime Updates**: No volume detach/attach during deployments
+3. **Tenant Migrations**: Simply update credentials, no data movement
+4. **Disaster Recovery**: Built into S3 durability model (99.999999999% durability)
+5. **Auto-Scaling**: Storage scales with usage, no capacity planning needed
+
+
+## How (High Level)
+
+### POC Approach: Server-First Validation
+
+**Rationale**: Start with server-side TigrisFS mounting because:
+- Local access is meaningless if cloud containers can't mount TigrisFS reliably
+- Container startup and API performance are critical path blockers
+- TigrisFS compatibility with Basic Memory operations must be proven first
+- Each phase gates the next - no point testing local access if server-side fails
+
+### Phase 1: Server-Side TigrisFS Validation (Critical Foundation) ✅ COMPLETE
+- [x] Set up Tigris bucket with test data via Fly.io integration
+- [x] Create container image with TigrisFS support and dependencies
+- [x] Test TigrisFS mounting in containerized environment
+- [x] Run Basic Memory API operations over mounted TigrisFS
+- [x] Validate all filesystem operations work correctly
+- [x] Measure container startup time and resource usage
+
+**Production Validation Results**: Container successfully deployed and operated for 42+ minutes serving real MCP requests with repository queries, knowledge graph navigation, and full Basic Memory API functionality over TigrisFS-mounted storage.
+
+### Phase 2: Database Migration to Turso
+- [ ] Set up Turso account and test database
+- [ ] Modify Basic Memory to accept external DATABASE_URL
+- [ ] Test all MCP tools with remote SQLite via Turso
+- [ ] Validate performance and functionality parity
+- [ ] Test API write → manual sync workflow in container
+
+### Phase 3: Production Container Integration
+- [ ] Implement tenant-specific credential management for buckets
+- [x] Test container startup with automatic TigrisFS mounting
+- [ ] Validate isolation between tenant containers
+- [ ] Test API operations under realistic load
+- [ ] Measure performance vs current Fly volume setup
+
+### Phase 4: Local Access Validation (Bonus Feature)
+- [ ] Test local TigrisFS mounting of tenant data
+- [ ] Validate read-only access for browsing/downloading
+- [ ] Test file copying and upload workflows
+- [ ] Measure latency impact on user experience
+- [ ] Test live editing if file watching works (stretch goal)
+
+### Architecture Overview
+```
+Local Development:
+┌─────────────────┐    ┌─────────────────┐    ┌─────────────────┐
+│ Local TigrisFS  │───▶│ Tigris Bucket   │◀───│ Tenant Container│
+│ Mount           │    │ (Global CDN)    │    │ TigrisFS mount  │
+└─────────────────┘    └─────────────────┘    └─────────────────┘
+         │                                              │
+         ▼                                              ▼
+┌─────────────────┐                            ┌─────────────────┐
+│ Basic Memory    │                            │ Basic Memory    │
+│ (local files)   │                            │ API + mounted   │
+└─────────────────┘                            └─────────────────┘
+         │                                              │
+         ▼                                              ▼
+┌─────────────────┐                            ┌─────────────────┐
+│ Turso Database  │◀───────────────────────────│ Turso Database  │
+│ (shared index)  │                            │ (shared index)  │
+└─────────────────┘                            └─────────────────┘
+
+Flow: API writes → Manual sync → Index update
+Local: File watching (if available) → Auto sync
+```
+
+## How to Evaluate
+
+### Success Criteria
+- [x] **Filesystem Compatibility**: Basic Memory operates without modification over TigrisFS-mounted storage
+- [x] **Performance Acceptable**: API-driven operations perform within acceptable latency (target: <500ms for typical operations)
+- [ ] **Database Functionality**: All Basic Memory features work with Turso remote SQLite
+- [x] **Container Reliability**: Tenant containers start successfully with automatic TigrisFS mounting
+- [ ] **Local Access Baseline**: Users can mount cloud files locally for read-only browsing and file copying
+- [x] **Data Isolation**: Tenant data remains properly isolated using bucket/database separation
+- [ ] **Local Access Stretch**: Live editing with eventual sync (1-5 second delays acceptable)
+
+### Testing Procedure
+
+#### Phase 1: Server-Side Foundation Testing
+1. **Container TigrisFS Test**:
+   ```dockerfile
+   # Test container with TigrisFS mounting
+   FROM python:3.12
+   RUN apt-get update && apt-get install -y tigrisfs
+
+   # Test startup script
+   #!/bin/bash
+   tigrisfs --memory-limit 2048 $TIGRIS_BUCKET /app/data --daemon
+   cd /app/data && basic-memory sync
+   basic-memory-api --data-dir /app/data
+   ```
+
+2. **API Operations Validation**:
+   ```bash
+   # Test all MCP operations over TigrisFS
+   curl -X POST /api/write_note -d '{"title":"test","content":"content"}'
+   curl -X GET /api/read_note/test
+   curl -X GET /api/search_notes?q=content
+   # Measure: response times, error rates, data consistency
+   ```
+
+#### Phase 2: Database Integration Testing
+3. **Turso Integration Test**:
+   ```bash
+   # Configure Turso connection in container
+   export DATABASE_URL="libsql://test-db.turso.io?authToken=..."
+
+   # Test all MCP tools with remote database
+   basic-memory tools # Test each tool functionality
+   # Test API write → manual sync workflow
+   ```
+
+#### Phase 3: Production Readiness Testing
+4. **Performance Benchmarking**:
+   - Container startup time with TigrisFS mounting
+   - API operation response times (target: <500ms for typical operations)
+   - Search query performance with Turso (target: comparable to local SQLite)
+   - TigrisFS cache hit rates and memory usage
+   - Concurrent tenant isolation
+
+#### Phase 4: Local Access Testing (If Phase 1-3 Succeed)
+5. **Local Access Validation**:
+   ```bash
+   # Test read-only access
+   tigrisfs tenant-bucket ~/local-tenant
+   ls -la ~/local-tenant  # Browse files
+   cp ~/local-tenant/notes/* ~/backup/  # Copy files
+
+   # Test file watching (stretch goal)
+   echo "test" > ~/local-tenant/test.md
+   # Check if changes sync to cloud
+   ```
+
+### Go/No-Go Criteria by Phase
+- **Phase 1**: Container must start successfully and serve API requests over TigrisFS
+- **Phase 2**: All MCP tools must work with Turso with <2x latency increase
+- **Phase 3**: Performance must be within 50% of current Fly volume setup
+- **Phase 4**: Local mounting must work reliably for read-only access
+
+### Risk Assessment
+**Moderate Risk Items (Mitigated by API-First Architecture)**:
+- [ ] TigrisFS performance for local access may have higher latency than local filesystem
+- [ ] File watching (`inotify`) over FUSE may be unreliable for local development
+- [ ] Network interruptions could cause filesystem errors during local editing
+- [ ] Write-back caching could cause data loss if container crashes during flush
+
+**Low Risk Items (API-First Eliminates)**:
+- [ ] ~~Real-time file watching~~ - Not required for cloud operations
+- [ ] ~~Concurrent write consistency~~ - Single-tenant model with API coordination
+- [ ] ~~S3 rate limits~~ - TigrisFS intelligent caching handles this
+
+**Mitigation Strategies**:
+- **Performance**: Comprehensive benchmarking with realistic workloads
+- **Reliability**: Graceful degradation to read-only local access if live editing fails
+- **Data Safety**: Regular sync intervals and write-through mode for critical operations
+- **Fallback**: Keep Fly volumes as backup deployment option
+
+### Metrics to Track
+- **API Latency**: Response times for MCP tools and web operations
+- **Cache Effectiveness**: TigrisFS cache hit rates and memory usage
+- **Local Access Performance**: File browsing and copying speeds
+- **Reliability**: Success rate of mount operations and data consistency
+- **Cost**: Storage usage, API calls, and network transfer costs vs current volumes
+
+## Notes
+
+### Key Architectural Decisions
+- **Single tenant per bucket/database**: Simplifies isolation and credential management
+- **Maintain POSIX compatibility**: Preserve Basic Memory's existing filesystem assumptions
+- **TigrisFS over rclone**: Purpose-built for object storage with intelligent caching
+- **Turso for SQLite**: Leverages specialized remote SQLite expertise
+- **API-first approach**: Eliminates file watching dependency for cloud operations
+
+### Alternative Approaches Considered
+- **S3-native storage backend**: Would require Basic Memory architecture changes
+- **Hybrid approach**: Local files + cloud sync (adds complexity)
+- **Standard rclone mounting**: Less optimized than TigrisFS for object storage workloads
+- **Keep Fly volumes**: Maintains current limitations but proven reliability
+
+### Integration Points
+- [ ] Fly.io Tigris integration for bucket provisioning
+- [ ] Turso account setup and database provisioning
+- [ ] Container image modifications for TigrisFS support
+- [ ] Credential management for tenant isolation
+- [ ] API modification for manual sync triggers
+- [ ] Local client setup documentation for TigrisFS mounting
+
+## Observations
+
+- [architecture] Tigris/Turso split cleanly separates file storage from indexing concerns #storage-separation
+- [breakthrough] API-first architecture eliminates file watching dependency for cloud operations #api-first-advantage
+- [user-experience] Local mounting of cloud files could be revolutionary for knowledge management #local-cloud-hybrid
+- [compatibility] Maintaining POSIX filesystem assumptions preserves Basic Memory's local/cloud compatibility #architecture-preservation
+- [simplification] Single tenant per bucket eliminates complex multi-tenancy in storage layer #tenant-isolation
+- [performance] TigrisFS intelligent caching could provide near-local performance for common operations #tigrisfs-advantage
+- [deployment] Zero-downtime updates become trivial without volume constraints #deployment-simplification
+- [benefit] Object storage pricing model could be more favorable than volume pricing #cost-optimization
+- [innovation] Read-only local access alone would address major SaaS limitation #competitive-advantage
+- [risk-mitigation] API-driven sync reduces performance requirements vs real-time file watching #risk-reduction
+
+## Relations
+
+- implements [[SPEC-6 Explicit Project Parameter Architecture]]
+- requires [[Fly.io Tigris Integration]]
+- enables [[Local Cloud File Access]]
+- alternative_to [[Fly Volume Storage]]
+
+## Links
+- https://fly.io/hello/tigris
+- https://fly.io/docs/tigris/
+- https://www.tigrisdata.com/docs/sdks/fly/data-migration-with-flyctl/
+- https://www.tigrisdata.com/docs/training/tigrisfs/
+- https://www.tigrisdata.com/blog/tigris-filesystem/
+- https://www.tigrisdata.com/docs/quickstarts/rclone/

specs/SPEC-8 TigrisFS Integration.md

@@ -0,0 +1,886 @@
+---
+title: 'SPEC-8: TigrisFS Integration for Tenant API'
+Date: September 22, 2025
+Status: Phase 3.6 Complete - Tenant Mount API Endpoints Ready for CLI Implementation
+Priority: High
+Goal: Replace Fly volumes with Tigris bucket provisioning in production tenant API
+permalink: spec-8-tigris-fs-integration
+---
+
+## Executive Summary
+
+Based on SPEC-7 Phase 4 POC testing, this spec outlines productizing the TigrisFS/rclone implementation in the Basic Memory Cloud tenant API. 
+We're moving from proof-of-concept to production integration, replacing Fly volume storage with Tigris bucket-per-tenant architecture.
+
+## Current Architecture (Fly Volumes)
+
+### Tenant Provisioning Flow
+```python
+# apps/cloud/src/basic_memory_cloud/workflows/tenant_provisioning.py
+async def provision_tenant_infrastructure(tenant_id: str):
+    # 1. Create Fly app
+    # 2. Create Fly volume  ← REPLACE THIS
+    # 3. Deploy API container with volume mount
+    # 4. Configure health checks
+```
+
+### Storage Implementation
+- Each tenant gets dedicated Fly volume (1GB-10GB)
+- Volume mounted at `/app/data` in API container
+- Local filesystem storage with Basic Memory indexing
+- No global caching or edge distribution
+
+## Proposed Architecture (Tigris Buckets)
+
+### New Tenant Provisioning Flow
+```python
+async def provision_tenant_infrastructure(tenant_id: str):
+    # 1. Create Fly app
+    # 2. Create Tigris bucket with admin credentials  ← NEW
+    # 3. Store bucket name in tenant record  ← NEW
+    # 4. Deploy API container with TigrisFS mount using admin credentials
+    # 5. Configure health checks
+```
+
+### Storage Implementation
+- Each tenant gets dedicated Tigris bucket
+- TigrisFS mounts bucket at `/app/data` in API container
+- Global edge caching and distribution
+- Configurable cache TTL for sync performance
+
+## Implementation Plan
+
+### Phase 1: Bucket Provisioning Service
+
+**✅ IMPLEMENTED: StorageClient with Admin Credentials**
+```python
+# apps/cloud/src/basic_memory_cloud/clients/storage_client.py
+class StorageClient:
+    async def create_tenant_bucket(self, tenant_id: UUID) -> TigrisBucketCredentials
+    async def delete_tenant_bucket(self, tenant_id: UUID, bucket_name: str) -> bool
+    async def list_buckets(self) -> list[TigrisBucketResponse]
+    async def test_tenant_credentials(self, credentials: TigrisBucketCredentials) -> bool
+```
+
+**Simplified Architecture Using Admin Credentials:**
+- Single admin access key with full Tigris permissions (configured in console)
+- No tenant-specific IAM user creation needed
+- Bucket-per-tenant isolation for logical separation
+- Admin credentials shared across all tenant operations
+
+**Integrate with Provisioning workflow:**
+```python
+# Update tenant_provisioning.py
+async def provision_tenant_infrastructure(tenant_id: str):
+    storage_client = StorageClient(settings.aws_access_key_id, settings.aws_secret_access_key)
+    bucket_creds = await storage_client.create_tenant_bucket(tenant_id)
+    await store_bucket_name(tenant_id, bucket_creds.bucket_name)
+    await deploy_api_with_tigris(tenant_id, bucket_creds)
+```
+
+### Phase 2: Simplified Bucket Management
+
+**✅ SIMPLIFIED: Admin Credentials + Bucket Names Only**
+
+Since we use admin credentials for all operations, we only need to track bucket names per tenant:
+
+1. **Primary Storage (Fly Secrets)**
+   ```bash
+   flyctl secrets set -a basic-memory-{tenant_id} \
+     AWS_ACCESS_KEY_ID="{admin_access_key}" \
+     AWS_SECRET_ACCESS_KEY="{admin_secret_key}" \
+     AWS_ENDPOINT_URL_S3="https://fly.storage.tigris.dev" \
+     AWS_REGION="auto" \
+     BUCKET_NAME="basic-memory-{tenant_id}"
+   ```
+
+2. **Database Storage (Bucket Name Only)**
+   ```python
+   # apps/cloud/src/basic_memory_cloud/models/tenant.py
+   class Tenant(BaseModel):
+       # ... existing fields
+       tigris_bucket_name: Optional[str] = None  # Just store bucket name
+       tigris_region: str = "auto"
+       created_at: datetime
+   ```
+
+**Benefits of Simplified Approach:**
+- No credential encryption/decryption needed
+- Admin credentials managed centrally in environment
+- Only bucket names stored in database (not sensitive)
+- Simplified backup/restore scenarios
+- Reduced security attack surface
+
+### Phase 3: API Container Updates
+
+**Update API container configuration:**
+```dockerfile
+# apps/api/Dockerfile
+# Add TigrisFS installation
+RUN curl -L https://github.com/tigrisdata/tigrisfs/releases/latest/download/tigrisfs-linux-amd64 \
+    -o /usr/local/bin/tigrisfs && chmod +x /usr/local/bin/tigrisfs
+```
+
+**Startup script integration:**
+```bash
+# apps/api/tigrisfs-startup.sh (already exists)
+# Mount TigrisFS → Start Basic Memory API
+exec python -m basic_memory_cloud_api.main
+```
+
+**Fly.toml environment (optimized for < 5s startup):**
+```toml
+# apps/api/fly.tigris-production.toml
+[env]
+  TIGRISFS_MEMORY_LIMIT = '1024'     # Reduced for faster init
+  TIGRISFS_MAX_FLUSHERS = '16'       # Fewer threads for faster startup
+  TIGRISFS_STAT_CACHE_TTL = '30s'    # Balance sync speed vs startup
+  TIGRISFS_LAZY_INIT = 'true'        # Enable lazy loading
+  BASIC_MEMORY_HOME = '/app/data'
+
+# Suspend optimization for wake-on-network
+[machine]
+  auto_stop_machines = "suspend"     # Faster than full stop
+  auto_start_machines = true
+  min_machines_running = 0
+```
+
+### Phase 4: Local Access Features
+
+**CLI automation for local mounting:**
+```python
+# New CLI command: basic-memory cloud mount
+async def setup_local_mount(tenant_id: str):
+    # 1. Fetch bucket credentials from cloud API
+    # 2. Configure rclone with scoped IAM policy
+    # 3. Mount via rclone nfsmount (macOS) or FUSE (Linux)
+    # 4. Start Basic Memory sync watcher
+```
+
+**Local mount configuration:**
+```bash
+# rclone config for tenant
+rclone mount basic-memory-{tenant_id}: ~/basic-memory-{tenant_id} \
+  --nfs-mount \
+  --vfs-cache-mode writes \
+  --cache-dir ~/.cache/rclone/basic-memory-{tenant_id}
+```
+
+### Phase 5: TigrisFS Cache Sync Solutions
+
+**Problem**: When files are uploaded via CLI/bisync, the tenant API container doesn't see them immediately due to TigrisFS cache (30s TTL) and lack of inotify events on mounted filesystems.
+
+**Multi-Layer Solution:**
+
+**Layer 1: API Sync Endpoint** (Immediate)
+```python
+# POST /sync - Force TigrisFS cache refresh
+# Callable by CLI after uploads
+subprocess.run(["sync", "fsync /app/data"], check=True)
+```
+
+**Layer 2: Tigris Webhook Integration** (Real-time)
+https://www.tigrisdata.com/docs/buckets/object-notifications/#webhook
+```python
+# Webhook endpoint for bucket changes
+@app.post("/webhooks/tigris/{tenant_id}")
+async def handle_bucket_notification(tenant_id: str, event: TigrisEvent):
+    if event.eventName in ["OBJECT_CREATED_PUT", "OBJECT_DELETED"]:
+        await notify_container_sync(tenant_id, event.object.key)
+```
+
+**Layer 3: CLI Sync Notification** (User-triggered)
+```bash
+# CLI calls container sync endpoint after successful bisync
+basic-memory cloud bisync  # Automatically notifies container
+curl -X POST https://basic-memory-{tenant-id}.fly.dev/sync
+```
+
+**Layer 4: Periodic Sync Fallback** (Safety net)
+```python
+# Background task: fsync /app/data every 30s as fallback
+# Ensures eventual consistency even if other layers fail
+```
+
+**Implementation Priority:**
+1. Layer 1 (API endpoint) - Quick testing capability
+2. Layer 3 (CLI integration) - Improved UX
+3. Layer 4 (Periodic fallback) - Safety net
+4. Layer 2 (Webhooks) - Production real-time sync
+
+
+## Performance Targets
+
+### Sync Latency
+- **Target**: < 5 seconds local→cloud→container
+- **Configuration**: `TIGRISFS_STAT_CACHE_TTL = '5s'`
+- **Monitoring**: Track sync metrics in production
+
+### Container Startup
+- **Target**: < 5 seconds including TigrisFS mount
+- **Fast retry**: 0.5s intervals for mount verification
+- **Fallback**: Container fails fast if mount fails
+
+### Memory Usage
+- **TigrisFS cache**: 2GB memory limit per container
+- **Concurrent uploads**: 32 flushers max
+- **VM sizing**: shared-cpu-2x (2048mb) minimum
+
+## Security Considerations
+
+### Bucket Isolation
+- Each tenant has dedicated bucket
+- IAM policies prevent cross-tenant access
+- No shared bucket with subdirectories
+
+### Credential Security
+- Fly secrets for runtime access
+- Encrypted database backup for disaster recovery
+- Credential rotation capability
+
+### Data Residency
+- Tigris global edge caching
+- SOC2 Type II compliance
+- Encryption at rest and in transit
+
+## Operational Benefits
+
+### Scalability
+- Horizontal scaling with stateless API containers
+- Global edge distribution
+- Better resource utilization
+
+### Reliability
+- No cold starts between tenants
+- Built-in redundancy and caching
+- Simplified backup strategy
+
+### Cost Efficiency
+- Pay-per-use storage pricing
+- Shared infrastructure benefits
+- Reduced operational overhead
+
+## Risk Mitigation
+
+### Data Loss Prevention
+- Dual credential storage (Fly + database)
+- Automated backup workflows to R2/S3
+- Tigris built-in redundancy
+
+### Performance Degradation
+- Configurable cache settings per tenant
+- Monitoring and alerting on sync latency
+- Fallback to volume storage if needed
+
+### Security Vulnerabilities
+- Bucket-per-tenant isolation
+- Regular credential rotation
+- Security scanning and monitoring
+
+## Success Metrics
+
+### Technical Metrics
+- Sync latency P50 < 5 seconds
+- Container startup time < 5 seconds
+- Zero data loss incidents
+- 99.9% uptime per tenant
+
+### Business Metrics
+- Reduced infrastructure costs vs volumes
+- Improved user experience with faster sync
+- Enhanced enterprise security posture
+- Simplified operational overhead
+
+## Open Questions
+
+1. **Tigris rate limits**: What are the API limits for bucket creation?
+2. **Cost analysis**: What's the break-even point vs Fly volumes?
+3. **Regional preferences**: Should enterprise customers choose regions?
+4. **Backup retention**: How long to keep automated backups?
+
+## Implementation Checklist
+
+### Phase 1: Bucket Provisioning Service ✅ COMPLETED
+- [x] **Research Tigris bucket API** - Document bucket creation and S3 API compatibility
+- [x] **Create StorageClient class** - Implemented with admin credentials and comprehensive integration tests
+- [x] **Test bucket creation** - Full test suite validates API integration with real Tigris environment
+- [x] **Add bucket provisioning to DBOS workflow** - Integrated StorageClient with tenant_provisioning.py
+
+### Phase 2: Simplified Bucket Management ✅ COMPLETED
+- [x] **Update Tenant model** with tigris_bucket_name field (replaced fly_volume_id)
+- [x] **Implement bucket name storage** - Database migration and model updates completed
+- [x] **Test bucket provisioning integration** - Full test suite validates workflow from tenant creation to bucket assignment
+- [x] **Remove volume logic from all tests** - Complete migration from volume-based to bucket-based architecture
+
+### Phase 3: API Container Integration ✅ COMPLETED
+- [x] **Update Dockerfile** to install TigrisFS binary in API container with configurable version
+- [x] **Optimize tigrisfs-startup.sh** with production-ready security and reliability improvements
+- [x] **Create production-ready container** with proper signal handling and mount validation
+- [x] **Implement security fixes** based on Claude code review (conditional debug, credential protection)
+- [x] **Add proper process supervision** with cleanup traps and error handling
+- [x] **Remove debug artifacts** - Cleaned up all debug Dockerfiles and test scripts
+
+### Phase 3.5: IAM Access Key Management ✅ COMPLETED
+- [x] **Research Tigris IAM API** - Documented create_policy, attach_user_policy, delete_access_key operations
+- [x] **Implement bucket-scoped credential generation** - StorageClient.create_tenant_access_keys() with IAM policies
+- [x] **Add comprehensive security test suite** - 5 security-focused integration tests covering all attack vectors
+- [x] **Verify cross-bucket access prevention** - Scoped credentials can ONLY access their designated bucket
+- [x] **Test credential lifecycle management** - Create, validate, delete, and revoke access keys
+- [x] **Validate admin vs scoped credential isolation** - Different access patterns and security boundaries
+- [x] **Test multi-tenant isolation** - Multiple tenants cannot access each other's buckets
+
+### Phase 3.6: Tenant Mount API Endpoints ✅ COMPLETED
+- [x] **Implement GET /tenant/mount/info** - Returns mount info without exposing credentials
+- [x] **Implement POST /tenant/mount/credentials** - Creates new bucket-scoped credentials for CLI mounting
+- [x] **Implement DELETE /tenant/mount/credentials/{cred_id}** - Revoke specific credentials with proper cleanup
+- [x] **Implement GET /tenant/mount/credentials** - List active credentials without exposing secrets
+- [x] **Add TenantMountCredentials database model** - Tracks credential metadata (no secret storage)
+- [x] **Create comprehensive test suite** - 28 tests covering all scenarios including multi-session support
+- [x] **Implement multi-session credential flow** - Multiple active credentials per tenant supported
+- [x] **Secure credential handling** - Secret keys never stored, returned once only for immediate use
+- [x] **Add dependency injection for StorageClient** - Clean integration with existing API architecture
+- [x] **Fix Tigris configuration for cloud service** - Added AWS environment variables to fly.template.toml
+- [x] **Update tenant machine configurations** - Include AWS credentials for TigrisFS mounting with clear credential strategy
+
+**Security Test Results:**
+```
+✅ Cross-bucket access prevention - PASS
+✅ Deleted credentials access revoked - PASS
+✅ Invalid credentials rejected - PASS
+✅ Admin vs scoped credential isolation - PASS
+✅ Multiple scoped credentials isolation - PASS
+```
+
+**Implementation Details:**
+- Uses Tigris IAM managed policies (create_policy + attach_user_policy)
+- Bucket-scoped S3 policies with Actions: GetObject, PutObject, DeleteObject, ListBucket
+- Resource ARNs limited to specific bucket: `arn:aws:s3:::bucket-name` and `arn:aws:s3:::bucket-name/*`
+- Access keys follow Tigris format: `tid_` prefix with secure random suffix
+- Complete cleanup on deletion removes both access keys and associated policies
+
+### Phase 4: Local Access CLI
+- [x] **Design local mount CLI command** for automated rclone configuration
+- [x] **Implement credential fetching** from cloud API for local setup
+- [x] **Create rclone config automation** for tenant-specific bucket mounting
+- [x] **Test local→cloud→container sync** with optimized cache settings
+- [x] **Document local access setup** for beta users
+
+### Phase 5: Webhook Integration (Future)
+- [ ] **Research Tigris webhook API** for object notifications and payload format
+- [ ] **Design webhook endpoint** for real-time sync notifications
+- [ ] **Implement notification handling** to trigger Basic Memory sync events
+- [ ] **Test webhook delivery** and sync latency improvements
+
+## Success Metrics
+- [ ] **Container startup < 5 seconds** including TigrisFS mount and Basic Memory init
+- [ ] **Sync latency < 5 seconds** for local→cloud→container file changes
+- [ ] **Zero data loss** during bucket provisioning and credential management
+- [ ] **100% test coverage** for new TigrisBucketService and credential functions
+- [ ] **Beta deployment** with internal users validating local-cloud workflow
+
+
+
+## Implementation Notes
+
+## Phase 4.1: Bidirectional Sync with rclone bisync (NEW)
+
+### Problem Statement
+During testing, we discovered that some applications (particularly Obsidian) don't detect file changes over NFS mounts. Rather than building a custom sync daemon, we can leverage `rclone bisync` - rclone's built-in bidirectional synchronization feature.
+
+### Solution: rclone bisync
+Use rclone's proven bidirectional sync instead of custom implementation:
+
+**Core Architecture:**
+```bash
+# rclone bisync handles all the complexity
+rclone bisync ~/basic-memory-{tenant_id} basic-memory-{tenant_id}:{bucket_name} \
+  --create-empty-src-dirs \
+  --conflict-resolve newer \
+  --resilient \
+  --check-access
+```
+
+**Key Benefits:**
+- ✅ **Battle-tested**: Production-proven rclone functionality
+- ✅ **MIT licensed**: Open source with permissive licensing
+- ✅ **No custom code**: Zero maintenance burden for sync logic
+- ✅ **Built-in safety**: max-delete protection, conflict resolution
+- ✅ **Simple installation**: Works with Homebrew rclone (no FUSE needed)
+- ✅ **File watcher compatible**: Works with Obsidian and all applications
+- ✅ **Offline support**: Can work offline and sync when connected
+
+### bisync Conflict Resolution Options
+
+**Built-in conflict strategies:**
+```bash
+--conflict-resolve none     # Keep both files with .conflict suffixes (safest)
+--conflict-resolve newer    # Always pick the most recently modified file
+--conflict-resolve larger   # Choose based on file size
+--conflict-resolve path1    # Always prefer local changes
+--conflict-resolve path2    # Always prefer cloud changes
+```
+
+### Sync Profiles Using bisync
+
+**Profile configurations:**
+```python
+BISYNC_PROFILES = {
+    "safe": {
+        "conflict_resolve": "none",      # Keep both versions
+        "max_delete": 10,                # Prevent mass deletion
+        "check_access": True,            # Verify sync integrity
+        "description": "Safe mode with conflict preservation"
+    },
+    "balanced": {
+        "conflict_resolve": "newer",     # Auto-resolve to newer file
+        "max_delete": 25,
+        "check_access": True,
+        "description": "Balanced mode (recommended default)"
+    },
+    "fast": {
+        "conflict_resolve": "newer",
+        "max_delete": 50,
+        "check_access": False,           # Skip verification for speed
+        "description": "Fast mode for rapid iteration"
+    }
+}
+```
+
+### CLI Commands
+
+**Manual sync commands:**
+```bash
+basic-memory cloud bisync                    # Manual bidirectional sync
+basic-memory cloud bisync --dry-run          # Preview changes
+basic-memory cloud bisync --profile safe     # Use specific profile
+basic-memory cloud bisync --resync           # Force full baseline resync
+```
+
+**Watch mode (Step 1):**
+```bash
+basic-memory cloud bisync --watch            # Long-running process, sync every 60s
+basic-memory cloud bisync --watch --interval 30s  # Custom interval
+```
+
+**System integration (Step 2 - Future):**
+```bash
+basic-memory cloud bisync-service install    # Install as system service
+basic-memory cloud bisync-service start      # Start background service
+basic-memory cloud bisync-service status     # Check service status
+```
+
+### Implementation Strategy
+
+**Phase 4.1.1: Core bisync Implementation**
+- [ ] Implement `run_bisync()` function wrapping rclone bisync
+- [ ] Add profile-based configuration (safe/balanced/fast)
+- [ ] Create conflict resolution and safety options
+- [ ] Test with sample files and conflict scenarios
+
+**Phase 4.1.2: Watch Mode**
+- [ ] Add `--watch` flag for continuous sync
+- [ ] Implement configurable sync intervals
+- [ ] Add graceful shutdown and signal handling
+- [ ] Create status monitoring and progress indicators
+
+**Phase 4.1.3: User Experience**
+- [ ] Add conflict reporting and resolution guidance
+- [ ] Implement dry-run preview functionality
+- [ ] Create troubleshooting and diagnostic commands
+- [ ] Add filtering configuration (.gitignore-style)
+
+**Phase 4.1.4: System Integration (Future)**
+- [ ] Generate platform-specific service files (launchd/systemd)
+- [ ] Add service management commands
+- [ ] Implement automatic startup and recovery
+- [ ] Create monitoring and logging integration
+
+### Technical Implementation
+
+**Core bisync wrapper:**
+```python
+def run_bisync(
+    tenant_id: str,
+    bucket_name: str,
+    profile: str = "balanced",
+    dry_run: bool = False
+) -> bool:
+    """Run rclone bisync with specified profile."""
+
+    local_path = Path.home() / f"basic-memory-{tenant_id}"
+    remote_path = f"basic-memory-{tenant_id}:{bucket_name}"
+    profile_config = BISYNC_PROFILES[profile]
+
+    cmd = [
+        "rclone", "bisync",
+        str(local_path), remote_path,
+        "--create-empty-src-dirs",
+        "--resilient",
+        f"--conflict-resolve={profile_config['conflict_resolve']}",
+        f"--max-delete={profile_config['max_delete']}",
+        "--filters-file", "~/.basic-memory/bisync-filters.txt"
+    ]
+
+    if profile_config.get("check_access"):
+        cmd.append("--check-access")
+
+    if dry_run:
+        cmd.append("--dry-run")
+
+    return subprocess.run(cmd, check=True).returncode == 0
+```
+
+**Default filter file (~/.basic-memory/bisync-filters.txt):**
+```
+- .DS_Store
+- .git/**
+- __pycache__/**
+- *.pyc
+- .pytest_cache/**
+- node_modules/**
+- .conflict-*
+- Thumbs.db
+- desktop.ini
+```
+
+**Advantages Over Custom Daemon:**
+- ✅ **Zero maintenance**: No custom sync logic to debug/maintain
+- ✅ **Production proven**: Used by thousands in production
+- ✅ **Safety features**: Built-in max-delete, conflict handling, recovery
+- ✅ **Filtering**: Advanced exclude patterns and rules
+- ✅ **Performance**: Optimized for various storage backends
+- ✅ **Community support**: Extensive documentation and community
+
+## Phase 4.2: NFS Mount Support (Direct Access)
+
+### Solution: rclone nfsmount
+Keep the existing NFS mount functionality for users who prefer direct file access:
+
+**Core Architecture:**
+```bash
+# rclone nfsmount provides transparent file access
+rclone nfsmount basic-memory-{tenant_id}:{bucket_name} ~/basic-memory-{tenant_id} \
+  --vfs-cache-mode writes \
+  --dir-cache-time 10s \
+  --daemon
+```
+
+**Key Benefits:**
+- ✅ **Real-time access**: Files appear immediately as they're created/modified
+- ✅ **Transparent**: Works with any application that reads/writes files
+- ✅ **Low latency**: Direct access without sync delays
+- ✅ **Simple**: No periodic sync commands needed
+- ✅ **Homebrew compatible**: Works with Homebrew rclone (no FUSE required)
+
+**Limitations:**
+- ❌ **File watcher compatibility**: Some apps (Obsidian) don't detect changes over NFS
+- ❌ **Network dependency**: Requires active connection to cloud storage
+- ❌ **Potential conflicts**: Simultaneous edits from multiple locations can cause issues
+
+### Mount Profiles (Existing)
+
+**Already implemented profiles from SPEC-7 testing:**
+```python
+MOUNT_PROFILES = {
+    "fast": {
+        "cache_time": "5s",
+        "poll_interval": "3s",
+        "description": "Ultra-fast development (5s sync)"
+    },
+    "balanced": {
+        "cache_time": "10s",
+        "poll_interval": "5s",
+        "description": "Fast development (10-15s sync, recommended)"
+    },
+    "safe": {
+        "cache_time": "15s",
+        "poll_interval": "10s",
+        "description": "Conflict-aware mount with backup",
+        "extra_args": ["--conflict-suffix", ".conflict-{DateTimeExt}"]
+    }
+}
+```
+
+### CLI Commands (Existing)
+
+**Mount commands already implemented:**
+```bash
+basic-memory cloud mount                     # Mount with balanced profile
+basic-memory cloud mount --profile fast     # Ultra-fast caching
+basic-memory cloud mount --profile safe     # Conflict detection
+basic-memory cloud unmount                  # Clean unmount
+basic-memory cloud mount-status             # Show mount status
+```
+
+## User Choice: Mount vs Bisync
+
+### When to Use Each Approach
+
+| Use Case | Recommended Solution | Why |
+|----------|---------------------|-----|
+| **Obsidian users** | `bisync` | File watcher support for live preview |
+| **CLI/vim/emacs users** | `mount` | Direct file access, lower latency |
+| **Offline work** | `bisync` | Can work offline, sync when connected |
+| **Real-time collaboration** | `mount` | Immediate visibility of changes |
+| **Multiple machines** | `bisync` | Better conflict handling |
+| **Single machine** | `mount` | Simpler, more transparent |
+| **Development work** | Either | Both work well, user preference |
+| **Large files** | `mount` | Streaming access vs full download |
+
+### Installation Simplicity
+
+**Both approaches now use simple Homebrew installation:**
+```bash
+# Single installation command for both approaches
+brew install rclone
+
+# No macFUSE, no system modifications needed
+# Works immediately with both mount and bisync
+```
+
+### Implementation Status
+
+**Phase 4.1: bisync** (NEW)
+- [ ] Implement bisync command wrapper
+- [ ] Add watch mode with configurable intervals
+- [ ] Create conflict resolution workflows
+- [ ] Add filtering and safety options
+
+**Phase 4.2: mount** (EXISTING - ✅ IMPLEMENTED)
+- [x] NFS mount commands with profile support
+- [x] Mount management and cleanup
+- [x] Process monitoring and health checks
+- [x] Credential integration with cloud API
+
+**Both approaches share:**
+- [x] Credential management via cloud API
+- [x] Secure rclone configuration
+- [x] Tenant isolation and bucket scoping
+- [x] Simple Homebrew rclone installation
+
+
+Key Features:
+
+1. Cross-Platform rclone Installation (rclone_installer.py):
+- macOS: Homebrew → official script fallback
+- Linux: snap → apt → official script fallback
+- Windows: winget → chocolatey → scoop fallback
+- Automatic version detection and verification
+
+2. Smart rclone Configuration (rclone_config.py):
+- Automatic tenant-specific config generation
+- Three optimized mount profiles from your SPEC-7 testing:
+- fast: 5s sync (ultra-performance)
+- balanced: 10-15s sync (recommended default)
+- safe: 15s sync + conflict detection
+- Backup existing configs before modification
+
+3. Robust Mount Management (mount_commands.py):
+- Automatic tenant credential generation
+- Mount path management (~/basic-memory-{tenant-id})
+- Process lifecycle management (prevent duplicate mounts)
+- Orphaned process cleanup
+- Mount verification and health checking
+
+4. Clean Architecture (api_client.py):
+- Separated API client to avoid circular imports
+- Reuses existing authentication infrastructure
+- Consistent error handling and logging
+
+User Experience:
+
+One-Command Setup:
+basic-memory cloud setup
+```bash 
+# 1. Installs rclone automatically
+# 2. Authenticates with existing login
+# 3. Generates secure credentials  
+# 4. Configures rclone
+# 5. Performs initial mount
+```
+
+Profile-Based Mounting:
+basic-memory cloud mount --profile fast      # 5s sync
+basic-memory cloud mount --profile balanced  # 15s sync (default)
+basic-memory cloud mount --profile safe      # conflict detection
+
+Status Monitoring:
+basic-memory cloud mount-status
+```bash 
+# Shows: tenant info, mount path, sync profile, rclone processes
+```
+### local mount api 
+
+Endpoint 1: Get Tenant Info for user
+Purpose: Get tenant details for mounting
+- pass in jwt
+- service returns mount info
+
+**✅ IMPLEMENTED API Specification:**
+
+**Endpoint 1: GET /tenant/mount/info**
+- Purpose: Get tenant mount information without exposing credentials
+- Authentication: JWT token (tenant_id extracted from claims)
+
+Request:
+```
+GET /tenant/mount/info
+Authorization: Bearer {jwt_token}
+```
+
+Response:
+```json
+{
+    "tenant_id": "434252dd-d83b-4b20-bf70-8a950ff875c4",
+    "bucket_name": "basic-memory-434252dd",
+    "has_credentials": true,
+    "credentials_created_at": "2025-09-22T16:48:50.414694"
+}
+```
+
+**Endpoint 2: POST /tenant/mount/credentials**
+- Purpose: Generate NEW bucket-scoped S3 credentials for rclone mounting
+- Authentication: JWT token (tenant_id extracted from claims)
+- Multi-session: Creates new credentials without revoking existing ones
+
+Request:
+```
+POST /tenant/mount/credentials
+Authorization: Bearer {jwt_token}
+Content-Type: application/json
+```
+*Note: No request body needed - tenant_id extracted from JWT*
+
+Response:
+```json
+{
+    "tenant_id": "434252dd-d83b-4b20-bf70-8a950ff875c4",
+    "bucket_name": "basic-memory-434252dd",
+    "access_key": "test_access_key_12345",
+    "secret_key": "test_secret_key_abcdef",
+    "endpoint_url": "https://fly.storage.tigris.dev",
+    "region": "auto"
+}
+```
+
+**🔒 Security Notes:**
+- Secret key returned ONCE only - never stored in database
+- Credentials are bucket-scoped (cannot access other tenants' buckets)
+- Multiple active credentials supported per tenant (work laptop + personal machine)
+
+Implementation Notes
+
+Security:
+- Both endpoints require JWT authentication
+- Extract tenant_id from JWT claims (not request body)
+- Generate scoped credentials (not admin credentials)
+- Credentials should have bucket-specific access only
+
+Integration Points:
+- Use your existing StorageClient from SPEC-8 implementation
+- Leverage existing JWT middleware for tenant extraction
+- Return same credential format as your Tigris bucket provisioning
+
+Error Handling:
+- 401 if not authenticated
+- 403 if tenant doesn't exist
+- 500 if credential generation fails
+
+**🔄 Design Decisions:**
+
+1. **Secure Credential Flow (No Secret Storage)**
+
+Based on CLI flow analysis, we follow security best practices:
+- ✅ API generates both access_key + secret_key via Tigris IAM
+- ✅ Returns both in API response for immediate use
+- ✅ CLI uses credentials immediately to configure rclone
+- ✅ Database stores only metadata (access_key + policy_arn for cleanup)
+- ✅ rclone handles secure local credential storage
+- ❌ **Never store secret_key in database (even encrypted)**
+
+2. **CLI Credential Flow**
+```bash
+# CLI calls API
+POST /tenant/mount/credentials → {access_key, secret_key, ...}
+
+# CLI immediately configures rclone
+rclone config create basic-memory-{tenant_id} s3 \
+  access_key_id={access_key} \
+  secret_access_key={secret_key} \
+  endpoint=https://fly.storage.tigris.dev
+
+# Database tracks metadata only
+INSERT INTO tenant_mount_credentials (tenant_id, access_key, policy_arn, ...)
+```
+
+3. **Multiple Sessions Supported**
+
+- Users can have multiple active credential sets (work laptop, personal machine, etc.)
+- Each credential generation creates a new Tigris access key
+- List active credentials via API (shows access_key but never secret)
+
+4. **Failure Handling & Cleanup**
+
+- **Happy Path**: Credentials created → Used immediately → rclone configured
+- **Orphaned Credentials**: Background job revokes unused credentials
+- **API Failure Recovery**: Retry Tigris deletion with stored policy_arn
+- **Status Tracking**: Track tigris_deletion_status (pending/completed/failed)
+
+5. **Event Sourcing & Audit**
+
+- MountCredentialCreatedEvent
+- MountCredentialRevokedEvent
+- MountCredentialOrphanedEvent (for cleanup)
+- Full audit trail for security compliance
+
+6. **Tenant/Bucket Validation**
+
+- Verify tenant exists and has valid bucket before credential generation
+- Use existing StorageClient to validate bucket access
+- Prevent credential generation for inactive/invalid tenants
+
+📋 **Implemented API Endpoints:**
+
+```
+✅ IMPLEMENTED:
+GET    /tenant/mount/info                    # Get tenant/bucket info (no credentials exposed)
+POST   /tenant/mount/credentials             # Generate new credentials (returns secret once)
+GET    /tenant/mount/credentials             # List active credentials (no secrets)
+DELETE /tenant/mount/credentials/{cred_id}   # Revoke specific credentials
+```
+
+**API Implementation Status:**
+- ✅ **GET /tenant/mount/info**: Returns tenant_id, bucket_name, has_credentials, credentials_created_at
+- ✅ **POST /tenant/mount/credentials**: Creates new bucket-scoped access keys, returns access_key + secret_key once
+- ✅ **GET /tenant/mount/credentials**: Lists active credentials without exposing secret keys
+- ✅ **DELETE /tenant/mount/credentials/{cred_id}**: Revokes specific credentials with proper Tigris IAM cleanup
+- ✅ **Multi-session support**: Multiple active credentials per tenant (work laptop + personal machine)
+- ✅ **Security**: Secret keys never stored in database, returned once only for immediate use
+- ✅ **Comprehensive test suite**: 28 tests covering all scenarios including error handling and multi-session flows
+- ✅ **Dependency injection**: Clean integration with existing FastAPI architecture
+- ✅ **Production-ready configuration**: Tigris credentials properly configured for tenant machines
+
+🗄️ **Secure Database Schema:**
+
+```sql
+CREATE TABLE tenant_mount_credentials (
+  id UUID PRIMARY KEY,
+  tenant_id UUID REFERENCES tenant(id),
+  access_key VARCHAR(255) NOT NULL,
+  -- secret_key REMOVED - never store secrets (security best practice)
+  policy_arn VARCHAR(255) NOT NULL,           -- For Tigris IAM cleanup
+  tigris_deletion_status VARCHAR(20) DEFAULT 'pending',  -- Track cleanup
+  created_at TIMESTAMP DEFAULT NOW(),
+  updated_at TIMESTAMP DEFAULT NOW(),
+  revoked_at TIMESTAMP NULL,
+  last_used_at TIMESTAMP NULL,               -- Track usage for orphan cleanup
+  description VARCHAR(255) DEFAULT 'CLI mount credentials'
+);
+```
+
+**Security Benefits:**
+- ✅ Database breach cannot expose secrets
+- ✅ Follows "secrets don't persist" security principle
+- ✅ Meets compliance requirements (SOC2, etc.)
+- ✅ Reduced attack surface
+- ✅ CLI gets credentials once and stores securely via rclone

specs/SPEC-9 Signed Header Tenant Information.md

@@ -0,0 +1,196 @@
+---
+title: 'SPEC-9: Signed Header Tenant Information'
+type: spec
+permalink: specs/spec-9-signed-header-tenant-information
+tags:
+- authentication
+- tenant-isolation
+- proxy
+- security
+- mcp
+---
+
+# SPEC-9: Signed Header Tenant Information
+
+## Why
+
+WorkOS JWT templates don't work with MCP's dynamic client registration requirement, preventing us from getting tenant information directly in JWT tokens. We need an alternative secure method to pass tenant context from the Cloud Proxy Service to tenant instances.
+
+**Problem Context:**
+- MCP spec requires dynamic client registration
+- WorkOS JWT templates only apply to statically configured clients
+- Without tenant information, we can't properly route requests or isolate tenant data
+- Current JWT tokens only contain standard OIDC claims (sub, email, etc.)
+
+**Affected Areas:**
+- Cloud Proxy Service (`apps/cloud`) - request forwarding
+- Tenant API instances (`apps/api`) - tenant context validation
+- MCP Gateway (`apps/mcp`) - authentication flow
+- Overall tenant isolation security model
+
+## What
+
+Implement HMAC-signed headers that the Cloud Proxy Service adds when forwarding requests to tenant instances. This provides secure, tamper-proof tenant information without relying on JWT custom claims.
+
+**Components:**
+- Header signing utility in Cloud Proxy Service
+- Header validation middleware in Tenant API instances
+- Shared secret configuration across services
+- Fallback mechanisms for development and error cases
+
+## How (High Level)
+
+### 1. Header Format
+Add these signed headers to all proxied requests:
+```
+X-BM-Tenant-ID: {tenant_id}
+X-BM-Timestamp: {unix_timestamp}
+X-BM-Signature: {hmac_sha256_signature}
+```
+
+### 2. Signature Algorithm
+```python
+# Canonical message format
+message = f"{tenant_id}:{timestamp}"
+
+# HMAC-SHA256 signature
+signature = hmac.new(
+    key=shared_secret.encode('utf-8'),
+    msg=message.encode('utf-8'),
+    digestmod=hashlib.sha256
+).hexdigest()
+```
+
+### 3. Implementation Flow
+
+#### Cloud Proxy Service (`apps/cloud`)
+1. Extract `tenant_id` from authenticated user profile
+2. Generate timestamp and canonical message
+3. Sign message with shared secret
+4. Add headers to request before forwarding to tenant instance
+
+#### Tenant API Instances (`apps/api`)
+1. Middleware validates headers on all incoming requests
+2. Extract tenant_id, timestamp from headers
+3. Verify timestamp is within acceptable window (5 minutes)
+4. Recompute signature and compare in constant time
+5. If valid, make tenant context available to Basic Memory tools
+
+### 4. Security Properties
+- **Authenticity**: Only services with shared secret can create valid signatures
+- **Integrity**: Header tampering invalidates signature
+- **Replay Protection**: Timestamp prevents reuse of old signatures
+- **Non-repudiation**: Each request is cryptographically tied to specific tenant
+
+### 5. Configuration
+```bash
+# Shared across Cloud Proxy and Tenant instances
+BM_TENANT_HEADER_SECRET=randomly-generated-256-bit-secret
+
+# Tenant API configuration
+BM_TENANT_HEADER_VALIDATION=true  # true (production) | false (dev only)
+```
+
+## How to Evaluate
+
+### Unit Tests
+- [ ] Header signing utility generates correct signatures
+- [ ] Header validation correctly accepts/rejects signatures
+- [ ] Timestamp validation within acceptable windows
+- [ ] Constant-time signature comparison prevents timing attacks
+
+### Integration Tests
+- [ ] End-to-end request flow from MCP client → proxy → tenant
+- [ ] Tenant isolation verified with signed headers
+- [ ] Error handling for missing/invalid headers
+- [ ] Disabled validation in development environment
+
+### Security Validation
+- [ ] Shared secret rotation procedure
+- [ ] Header tampering detection
+- [ ] Clock skew tolerance testing
+- [ ] Performance impact measurement
+
+### Production Readiness
+- [ ] Logging and monitoring of header validation
+- [ ] Graceful degradation for header validation failures
+- [ ] Documentation for secret management
+- [ ] Deployment configuration templates
+
+## Implementation Notes
+
+### Shared Secret Management
+- Generate cryptographically secure 256-bit secret
+- Same secret deployed to Cloud Proxy and all Tenant instances
+- Consider secret rotation strategy for production
+
+### Error Handling
+```python
+# Strict mode (production)
+if not validate_headers(request):
+    raise HTTPException(status_code=401, detail="Invalid tenant headers")
+
+# Fallback mode (development)
+if not validate_headers(request):
+    logger.warning("Invalid headers, falling back to default tenant")
+    tenant_id = "default"
+```
+
+### Performance Considerations
+- HMAC-SHA256 computation is fast (~microseconds)
+- Headers add ~200 bytes to each request
+- Validation happens once per request in middleware
+
+## Benefits
+
+✅ **Works with MCP dynamic client registration** - No dependency on JWT custom claims
+✅ **Simple and reliable** - Standard HMAC signature approach
+✅ **Secure by design** - Cryptographic authenticity and integrity
+✅ **Infrastructure controlled** - No external service dependencies
+✅ **Easy to implement** - Clear signature algorithm and validation
+
+## Trade-offs
+
+⚠️ **Shared secret management** - Need secure distribution and rotation
+⚠️ **Clock synchronization** - Timestamp validation requires reasonably synced clocks
+⚠️ **Header visibility** - Headers visible in logs (tenant_id not sensitive)
+⚠️ **Additional complexity** - More moving parts in proxy forwarding
+
+## Implementation Tasks
+
+### Cloud Service (Header Signing)
+- [ ] Create `utils/header_signing.py` with HMAC-SHA256 signing function
+- [ ] Add `bm_tenant_header_secret` to Cloud service configuration
+- [ ] Update `ProxyService.forward_request()` to call signing utility
+- [ ] Add signed headers (X-BM-Tenant-ID, X-BM-Timestamp, X-BM-Signature)
+
+### Tenant API (Header Validation)
+- [ ] Create `utils/header_validation.py` with signature verification
+- [ ] Add `bm_tenant_header_secret` to API service configuration
+- [ ] Create `TenantHeaderValidationMiddleware` class
+- [ ] Add middleware to FastAPI app (before other middleware)
+- [ ] Skip validation for `/health` endpoint
+- [ ] Store validated tenant_id in request.state
+
+### Testing
+- [ ] Unit test for header signing utility
+- [ ] Unit test for header validation utility
+- [ ] Integration test for proxy → tenant flow
+- [ ] Test invalid/missing header handling
+- [ ] Test timestamp window validation
+- [ ] Test signature tampering detection
+
+### Configuration & Deployment
+- [ ] Update `.env.example` with BM_TENANT_HEADER_SECRET
+- [ ] Generate secure 256-bit secret for production
+- [ ] Update Fly.io secrets for both services
+- [ ] Document secret rotation procedure
+
+## Status
+
+- [x] **Specification Complete** - Design finalized and documented
+- [ ] **Implementation Started** - Header signing utility development
+- [ ] **Cloud Proxy Updated** - ProxyService adds signed headers
+- [ ] **Tenant Validation Added** - Middleware validates headers
+- [ ] **Testing Complete** - All validation criteria met
+- [ ] **Production Deployed** - Live with tenant isolation via headers

specs/SPEC-9-1 Follow-Ups- Conflict, Sync, and Observability.md

@@ -0,0 +1,390 @@
+---
+title: 'SPEC-9-1 Follow-Ups: Conflict, Sync, and Observability'
+type: tasklist
+permalink: specs/spec-9-follow-ups-conflict-sync-and-observability
+related: specs/spec-9-multi-project-bisync
+status: revised
+revision_date: 2025-10-03
+---
+
+# SPEC-9-1 Follow-Ups: Conflict, Sync, and Observability
+
+**REVISED 2025-10-03:** Simplified to leverage rclone built-ins instead of custom conflict handling.
+
+**Context:** SPEC-9 delivered multi-project bidirectional sync and a unified CLI. This follow-up focuses on **observability and safety** using rclone's built-in capabilities rather than reinventing conflict handling.
+
+**Design Philosophy: "Be Dumb Like Git"**
+- Let rclone bisync handle conflict detection (it already does this)
+- Make conflicts visible and recoverable, don't prevent them
+- Cloud is always the winner on conflict (cloud-primary model)
+- Users who want version history can just use Git locally in their sync directory
+
+**What Changed from Original Version:**
+- **Replaced:** Custom `.bmmeta` sidecars → Use rclone's `.bisync/` state tracking
+- **Replaced:** Custom conflict detection → Use rclone bisync 3-way merge
+- **Replaced:** Tombstone files → rclone delete tracking handles this
+- **Replaced:** Distributed lease → Local process lock only (document multi-device warning)
+- **Replaced:** S3 versioning service → Users just use Git locally if they want history
+- **Deferred:** SPEC-14 Git integration → Postponed to teams/multi-user features
+
+## ✅ Now 
+- [ ] **Local process lock**: Prevent concurrent bisync runs on same device (`~/.basic-memory/sync.lock`)
+- [ ] **Structured sync reports**: Parse rclone bisync output into JSON reports (creates/updates/deletes/conflicts, bytes, duration); `bm sync --report`
+- [ ] **Multi-device warning**: Document that users should not run `--watch` on multiple devices simultaneously
+- [ ] **Version control guidance**: Document pattern for users to use Git locally in their sync directory if they want version history
+- [ ] **Docs polish**: cloud-mode toggle, mount↔bisync directory isolation, conflict semantics, quick start, migration guide, short demo clip/GIF
+
+## 🔜 Next
+- [ ] **Observability commands**: `bm conflicts list`, `bm sync history` to view sync reports and conflicts
+- [ ] **Conflict resolution UI**: `bm conflicts resolve <file>` to interactively pick winner from conflict files
+- [ ] **Selective sync**: allow include/exclude by project; per-project profile (safe/balanced/fast)
+
+## 🧭 Later
+- [ ] **Near real-time sync**: File watcher → targeted `rclone copy` for individual files (keep bisync as backstop)
+- [ ] **Sharing / scoped tokens**: cross-tenant/project access
+- [ ] **Bandwidth controls & backpressure**: policy for large repos
+- [ ] **Client-side encryption (optional)**: with clear trade-offs
+
+## 📏 Acceptance criteria (for "Now" items)
+- [ ] Local process lock prevents concurrent bisync runs on same device
+- [ ] rclone bisync conflict files visible and documented (`file.conflict1.md`, `file.conflict2.md`)
+- [ ] `bm sync --report` generates parsable JSON with sync statistics
+- [ ] Documentation clearly warns about multi-device `--watch` mode
+- [ ] Documentation shows users how to use Git locally for version history
+
+## What We're NOT Building (Deferred to rclone)
+- ❌ Custom `.bmmeta` sidecars (rclone tracks state in `.bisync/` workdir)
+- ❌ Custom conflict detection (rclone bisync already does 3-way merge detection)
+- ❌ Tombstone files (S3 versioning + rclone delete tracking handles this)
+- ❌ Distributed lease (low probability issue, rclone detects state divergence)
+- ❌ Rename/move tracking (rclone has size+modtime heuristics built-in)
+
+## Implementation Summary
+
+**Current State (SPEC-9):**
+- ✅ rclone bisync with 3 profiles (safe/balanced/fast)
+- ✅ `--max-delete` safety limits (10/25/50 files)
+- ✅ `--conflict-resolve=newer` for auto-resolution
+- ✅ Watch mode: `bm sync --watch` (60s intervals)
+- ✅ Integrity checking: `bm cloud check`
+- ✅ Mount vs bisync directory isolation
+
+**What's Needed (This Spec):**
+1. **Process lock** - Simple file-based lock in `~/.basic-memory/sync.lock`
+2. **Sync reports** - Parse rclone output, save to `~/.basic-memory/sync-history/`
+3. **Documentation** - Multi-device warnings, conflict resolution workflow, Git usage pattern
+
+**User Model:**
+- Cloud is always the winner on conflict (cloud-primary)
+- rclone creates `.conflict` files for divergent edits
+- Users who want version history just use Git in their local sync directory
+- Users warned: don't run `--watch` on multiple devices
+
+## Decision Rationale & Trade-offs
+
+### Why Trust rclone Instead of Custom Conflict Handling?
+
+**rclone bisync already provides:**
+- 3-way merge detection (compares local, remote, and last-known state)
+- File state tracking in `.bisync/` workdir (hashes, modtimes)
+- Automatic conflict file creation: `file.conflict1.md`, `file.conflict2.md`
+- Rename detection via size+modtime heuristics
+- Delete tracking (prevents resurrection of deleted files)
+- Battle-tested with extensive edge case handling
+
+**What we'd have to build with custom approach:**
+- Per-file metadata tracking (`.bmmeta` sidecars)
+- 3-way diff algorithm
+- Conflict detection logic
+- Tombstone files for deletes
+- Rename/move detection
+- Testing for all edge cases
+
+**Decision:** Use what rclone already does well. Don't reinvent the wheel.
+
+### Why Let Users Use Git Locally Instead of Building Versioning?
+
+**The simplest solution: Just use Git**
+
+Users who want version history can literally just use Git in their sync directory:
+
+```bash
+cd ~/basic-memory-cloud-sync/
+git init
+git add .
+git commit -m "backup"
+
+# Push to their own GitHub if they want
+git remote add origin git@github.com:user/my-knowledge.git
+git push
+```
+
+**Why this is perfect:**
+- ✅ We build nothing
+- ✅ Users who want Git... just use Git
+- ✅ Users who don't care... don't need to
+- ✅ rclone bisync already handles sync conflicts
+- ✅ Users own their data, they can version it however they want (Git, Time Machine, etc.)
+
+**What we'd have to build for S3 versioning:**
+- API to enable versioning on Tigris buckets
+  - **Problem**: Tigris doesn't support S3 bucket versioning
+- Restore commands: `bm cloud restore --version-id`
+- Version listing: `bm cloud versions <path>`
+- Lifecycle policies for version retention
+- Documentation and user education
+
+**What we'd have to build for SPEC-14 Git integration:**
+- Committer service (daemon watching `/app/data/`)
+- Puller service (webhook handler for GitHub pushes)
+- Git LFS for large files
+- Loop prevention between Git ↔ bisync ↔ local
+- Merge conflict handling at TWO layers (rclone + Git)
+- Webhook infrastructure and monitoring
+
+**Decision:** Don't build version control. Document the pattern. "The easiest problem to solve is the one you avoid."
+
+**When to revisit:** Teams/multi-user features where server-side version control becomes necessary for collaboration.
+
+### Why No Distributed Lease?
+
+**Low probability issue:**
+- Requires user to manually run `bm sync` on multiple devices at exact same time
+- Most users run `--watch` on one primary device
+- rclone bisync detects state divergence and fails safely
+
+**Safety nets in place:**
+- Local process lock prevents concurrent runs on same device
+- rclone bisync aborts if bucket state changed during sync
+- S3 versioning recovers from any overwrites
+- Documentation warns against multi-device `--watch`
+
+**Failure mode:**
+```bash
+# Device A and B sync simultaneously
+Device A: bm sync → succeeds
+Device B: bm sync → "Error: path has changed, run --resync"
+
+# User fixes with resync
+Device B: bm sync --resync → establishes new baseline
+```
+
+**Decision:** Document the issue, add local lock, defer distributed coordination until users report actual problems.
+
+### Cloud-Primary Conflict Model
+
+**User mental model:**
+- Cloud is the source of truth (like Dropbox/iCloud)
+- Local is working copy
+- On conflict: cloud wins, local edits → `.conflict` file
+- User manually picks winner
+
+**Why this works:**
+- Simpler than bidirectional merge (no automatic resolution risk)
+- Matches user expectations from Dropbox
+- S3 versioning provides safety net for overwrites
+- Clear recovery path: restore from S3 version if needed
+
+**Example workflow:**
+```bash
+# Edit file on Device A and Device B while offline
+# Both devices come online and sync
+
+Device A: bm sync
+# → Pushes to cloud first, becomes canonical version
+
+Device B: bm sync
+# → Detects conflict
+# → Cloud version: work/notes.md
+# → Local version: work/notes.md.conflict1
+# → User manually merges or picks winner
+
+# Restore if needed
+bm cloud restore work/notes.md --version-id abc123
+```
+
+## Implementation Details
+
+### 1. Local Process Lock
+
+```python
+# ~/.basic-memory/sync.lock
+import os
+import psutil
+from pathlib import Path
+
+class SyncLock:
+    def __init__(self):
+        self.lock_file = Path.home() / '.basic-memory' / 'sync.lock'
+
+    def acquire(self):
+        if self.lock_file.exists():
+            pid = int(self.lock_file.read_text())
+            if psutil.pid_exists(pid):
+                raise BisyncError(
+                    f"Sync already running (PID {pid}). "
+                    f"Wait for completion or kill stale process."
+                )
+            # Stale lock, remove it
+            self.lock_file.unlink()
+
+        self.lock_file.write_text(str(os.getpid()))
+
+    def release(self):
+        if self.lock_file.exists():
+            self.lock_file.unlink()
+
+    def __enter__(self):
+        self.acquire()
+        return self
+
+    def __exit__(self, *args):
+        self.release()
+
+# Usage
+with SyncLock():
+    run_rclone_bisync()
+```
+
+### 3. Sync Report Parsing
+
+```python
+# Parse rclone bisync output
+import json
+from datetime import datetime
+from pathlib import Path
+
+def parse_sync_report(rclone_output: str, duration: float, exit_code: int) -> dict:
+    """Parse rclone bisync output into structured report."""
+
+    # rclone bisync outputs lines like:
+    # "Synching Path1 /local/path with Path2 remote:bucket"
+    # "- Path1    File was copied to Path2"
+    # "Bisync successful"
+
+    report = {
+        "timestamp": datetime.now().isoformat(),
+        "duration_seconds": duration,
+        "exit_code": exit_code,
+        "success": exit_code == 0,
+        "files_created": 0,
+        "files_updated": 0,
+        "files_deleted": 0,
+        "conflicts": [],
+        "errors": []
+    }
+
+    for line in rclone_output.split('\n'):
+        if 'was copied to' in line:
+            report['files_created'] += 1
+        elif 'was updated in' in line:
+            report['files_updated'] += 1
+        elif 'was deleted from' in line:
+            report['files_deleted'] += 1
+        elif '.conflict' in line:
+            report['conflicts'].append(line.strip())
+        elif 'ERROR' in line:
+            report['errors'].append(line.strip())
+
+    return report
+
+def save_sync_report(report: dict):
+    """Save sync report to history."""
+    history_dir = Path.home() / '.basic-memory' / 'sync-history'
+    history_dir.mkdir(parents=True, exist_ok=True)
+
+    timestamp = datetime.now().strftime('%Y%m%d-%H%M%S')
+    report_file = history_dir / f'{timestamp}.json'
+
+    report_file.write_text(json.dumps(report, indent=2))
+
+# Usage in run_bisync()
+start_time = time.time()
+result = subprocess.run(bisync_cmd, capture_output=True, text=True)
+duration = time.time() - start_time
+
+report = parse_sync_report(result.stdout, duration, result.returncode)
+save_sync_report(report)
+
+if report['conflicts']:
+    console.print(f"[yellow]⚠ {len(report['conflicts'])} conflict(s) detected[/yellow]")
+    console.print("[dim]Run 'bm conflicts list' to view[/dim]")
+```
+
+### 4. User Commands
+
+```bash
+# View sync history
+bm sync history
+# → Lists recent syncs from ~/.basic-memory/sync-history/*.json
+# → Shows: timestamp, duration, files changed, conflicts, errors
+
+# View current conflicts
+bm conflicts list
+# → Scans sync directory for *.conflict* files
+# → Shows: file path, conflict versions, timestamps
+
+# Restore from S3 version
+bm cloud restore work/notes.md --version-id abc123
+# → Uses aws s3api get-object with version-id
+# → Downloads to original path
+
+bm cloud restore work/notes.md --timestamp "2025-10-03 14:30"
+# → Lists versions, finds closest to timestamp
+# → Downloads that version
+
+# List file versions
+bm cloud versions work/notes.md
+# → Uses aws s3api list-object-versions
+# → Shows: version-id, timestamp, size, author
+
+# Interactive conflict resolution
+bm conflicts resolve work/notes.md
+# → Shows both versions side-by-side
+# → Prompts: Keep local, keep cloud, merge manually, restore from S3 version
+# → Cleans up .conflict files after resolution
+```
+
+## Success Metrics & Monitoring
+
+**Phase 1 (v1) - Basic Safety:**
+- [ ] Conflict detection rate < 5% of syncs (measure in telemetry)
+- [ ] User can resolve conflicts within 5 minutes (UX testing)
+- [ ] Documentation prevents 90% of multi-device issues
+
+**Phase 2 (v2) - Observability:**
+- [ ] 80% of users check `bm sync history` when troubleshooting
+- [ ] Average time to restore from S3 version < 2 minutes
+- 
+- [ ] Conflict resolution success rate > 95%
+
+**What to measure:**
+```python
+# Telemetry in sync reports
+{
+    "conflict_rate": conflicts / total_syncs,
+    "multi_device_collisions": count_state_divergence_errors,
+    "version_restores": count_restore_operations,
+    "avg_sync_duration": sum(durations) / count,
+    "max_delete_trips": count_max_delete_aborts
+}
+```
+
+**When to add distributed lease:**
+- Multi-device collision rate > 5% of syncs
+- User complaints about state divergence errors
+- Evidence that local lock isn't sufficient
+
+**When to revisit Git (SPEC-14):**
+- Teams feature launches (multi-user collaboration)
+- Users request commit messages / audit trail
+- PR-based review workflow becomes valuable
+
+## Links
+- SPEC-9: `specs/spec-9-multi-project-bisync`
+- SPEC-14: `specs/spec-14-cloud-git-versioning` (deferred in favor of S3 versioning)
+- rclone bisync docs: https://rclone.org/bisync/
+- Tigris S3 versioning: https://www.tigrisdata.com/docs/buckets/versioning/
+
+---
+**Owner:** <assign>  |  **Review cadence:** weekly in standup  |  **Last updated:** 2025-10-03

src/basic_memory/__init__.py

@@ -1,7 +1,7 @@
 """basic-memory - Local-first knowledge management combining Zettelkasten with knowledge graphs"""
 
 # Package version - updated by release automation
-__version__ = "0.14.4"
+__version__ = "0.16.0"
 
 # API version for FastAPI - independent of package version
 __api_version__ = "v0"

src/basic_memory/alembic/versions/9d9c1cb7d8f5_add_mtime_and_size_columns_to_entity_.py

@@ -0,0 +1,49 @@
+"""Add mtime and size columns to Entity for sync optimization
+
+Revision ID: 9d9c1cb7d8f5
+Revises: a1b2c3d4e5f6
+Create Date: 2025-10-20 05:07:55.173849
+
+"""
+
+from typing import Sequence, Union
+
+from alembic import op
+import sqlalchemy as sa
+
+
+# revision identifiers, used by Alembic.
+revision: str = "9d9c1cb7d8f5"
+down_revision: Union[str, None] = "a1b2c3d4e5f6"
+branch_labels: Union[str, Sequence[str], None] = None
+depends_on: Union[str, Sequence[str], None] = None
+
+
+def upgrade() -> None:
+    # ### commands auto generated by Alembic - please adjust! ###
+    with op.batch_alter_table("entity", schema=None) as batch_op:
+        batch_op.add_column(sa.Column("mtime", sa.Float(), nullable=True))
+        batch_op.add_column(sa.Column("size", sa.Integer(), nullable=True))
+        batch_op.drop_constraint(batch_op.f("fk_entity_project_id"), type_="foreignkey")
+        batch_op.create_foreign_key(
+            batch_op.f("fk_entity_project_id"), "project", ["project_id"], ["id"]
+        )
+
+    # ### end Alembic commands ###
+
+
+def downgrade() -> None:
+    # ### commands auto generated by Alembic - please adjust! ###
+    with op.batch_alter_table("entity", schema=None) as batch_op:
+        batch_op.drop_constraint(batch_op.f("fk_entity_project_id"), type_="foreignkey")
+        batch_op.create_foreign_key(
+            batch_op.f("fk_entity_project_id"),
+            "project",
+            ["project_id"],
+            ["id"],
+            ondelete="CASCADE",
+        )
+        batch_op.drop_column("size")
+        batch_op.drop_column("mtime")
+
+    # ### end Alembic commands ###

src/basic_memory/alembic/versions/a1b2c3d4e5f6_fix_project_foreign_keys.py

@@ -20,14 +20,14 @@ depends_on: Union[str, Sequence[str], None] = None
 
 def upgrade() -> None:
     """Re-establish foreign key constraints that were lost during project table recreation.
-    
+
     The migration 647e7a75e2cd recreated the project table but did not re-establish
     the foreign key constraint from entity.project_id to project.id, causing
     foreign key constraint failures when trying to delete projects with related entities.
     """
     # SQLite doesn't allow adding foreign key constraints to existing tables easily
     # We need to be careful and handle the case where the constraint might already exist
-    
+
     with op.batch_alter_table("entity", schema=None) as batch_op:
         # Try to drop existing foreign key constraint (may not exist)
         try:
@@ -35,19 +35,15 @@ def upgrade() -> None:
         except Exception:
             # Constraint may not exist, which is fine - we'll create it next
             pass
-        
+
         # Add the foreign key constraint with CASCADE DELETE
         # This ensures that when a project is deleted, all related entities are also deleted
         batch_op.create_foreign_key(
-            "fk_entity_project_id", 
-            "project", 
-            ["project_id"], 
-            ["id"],
-            ondelete="CASCADE"
+            "fk_entity_project_id", "project", ["project_id"], ["id"], ondelete="CASCADE"
         )
 
 
 def downgrade() -> None:
     """Remove the foreign key constraint."""
     with op.batch_alter_table("entity", schema=None) as batch_op:
-        batch_op.drop_constraint("fk_entity_project_id", type_="foreignkey")
+        batch_op.drop_constraint("fk_entity_project_id", type_="foreignkey")

src/basic_memory/alembic/versions/e7e1f4367280_add_scan_watermark_tracking_to_project.py

@@ -0,0 +1,37 @@
+"""Add scan watermark tracking to Project
+
+Revision ID: e7e1f4367280
+Revises: 9d9c1cb7d8f5
+Create Date: 2025-10-20 16:42:46.625075
+
+"""
+
+from typing import Sequence, Union
+
+from alembic import op
+import sqlalchemy as sa
+
+
+# revision identifiers, used by Alembic.
+revision: str = "e7e1f4367280"
+down_revision: Union[str, None] = "9d9c1cb7d8f5"
+branch_labels: Union[str, Sequence[str], None] = None
+depends_on: Union[str, Sequence[str], None] = None
+
+
+def upgrade() -> None:
+    # ### commands auto generated by Alembic - please adjust! ###
+    with op.batch_alter_table("project", schema=None) as batch_op:
+        batch_op.add_column(sa.Column("last_scan_timestamp", sa.Float(), nullable=True))
+        batch_op.add_column(sa.Column("last_file_count", sa.Integer(), nullable=True))
+
+    # ### end Alembic commands ###
+
+
+def downgrade() -> None:
+    # ### commands auto generated by Alembic - please adjust! ###
+    with op.batch_alter_table("project", schema=None) as batch_op:
+        batch_op.drop_column("last_file_count")
+        batch_op.drop_column("last_scan_timestamp")
+
+    # ### end Alembic commands ###

src/basic_memory/api/app.py

@@ -21,19 +21,25 @@ from basic_memory.api.routers import (
     prompt_router,
 )
 from basic_memory.config import ConfigManager
-from basic_memory.services.initialization import initialize_app, initialize_file_sync
+from basic_memory.services.initialization import initialize_file_sync, initialize_app
 
 
 @asynccontextmanager
 async def lifespan(app: FastAPI):  # pragma: no cover
-    """Lifecycle manager for the FastAPI app."""
+    """Lifecycle manager for the FastAPI app. Not called in stdio mcp mode"""
 
     app_config = ConfigManager().config
-    # Initialize app and database
     logger.info("Starting Basic Memory API")
-    print(f"fastapi {app_config.projects}")
+
     await initialize_app(app_config)
 
+    # Cache database connections in app state for performance
+    logger.info("Initializing database and caching connections...")
+    engine, session_maker = await db.get_or_create_db(app_config.database_path)
+    app.state.engine = engine
+    app.state.session_maker = session_maker
+    logger.info("Database connections cached in app state")
+
     logger.info(f"Sync changes enabled: {app_config.sync_changes}")
     if app_config.sync_changes:
         # start file sync task in background

src/basic_memory/api/routers/directory_router.py

@@ -10,7 +10,7 @@ from basic_memory.schemas.directory import DirectoryNode
 router = APIRouter(prefix="/directory", tags=["directory"])
 
 
-@router.get("/tree", response_model=DirectoryNode)
+@router.get("/tree", response_model=DirectoryNode, response_model_exclude_none=True)
 async def get_directory_tree(
     directory_service: DirectoryServiceDep,
     project_id: ProjectIdDep,
@@ -31,7 +31,28 @@ async def get_directory_tree(
     return tree
 
 
-@router.get("/list", response_model=List[DirectoryNode])
+@router.get("/structure", response_model=DirectoryNode, response_model_exclude_none=True)
+async def get_directory_structure(
+    directory_service: DirectoryServiceDep,
+    project_id: ProjectIdDep,
+):
+    """Get folder structure for navigation (no files).
+
+    Optimized endpoint for folder tree navigation. Returns only directory nodes
+    without file metadata. For full tree with files, use /directory/tree.
+
+    Args:
+        directory_service: Service for directory operations
+        project_id: ID of the current project
+
+    Returns:
+        DirectoryNode tree containing only folders (type="directory")
+    """
+    structure = await directory_service.get_directory_structure()
+    return structure
+
+
+@router.get("/list", response_model=List[DirectoryNode], response_model_exclude_none=True)
 async def list_directory(
     directory_service: DirectoryServiceDep,
     project_id: ProjectIdDep,

src/basic_memory/api/routers/knowledge_router.py

@@ -27,6 +27,26 @@ from basic_memory.schemas.base import Permalink, Entity
 
 router = APIRouter(prefix="/knowledge", tags=["knowledge"])
 
+
+async def resolve_relations_background(sync_service, entity_id: int, entity_permalink: str) -> None:
+    """Background task to resolve relations for a specific entity.
+
+    This runs asynchronously after the API response is sent, preventing
+    long delays when creating entities with many relations.
+    """
+    try:
+        # Only resolve relations for the newly created entity
+        await sync_service.resolve_relations(entity_id=entity_id)
+        logger.debug(
+            f"Background: Resolved relations for entity {entity_permalink} (id={entity_id})"
+        )
+    except Exception as e:
+        # Log but don't fail - this is a background task
+        logger.warning(
+            f"Background: Failed to resolve relations for entity {entity_permalink}: {e}"
+        )
+
+
 ## Create endpoints
 
 
@@ -88,15 +108,12 @@ async def create_or_update_entity(
     # reindex
     await search_service.index_entity(entity, background_tasks=background_tasks)
 
-    # Attempt immediate relation resolution when creating new entities
-    # This helps resolve forward references when related entities are created in the same session
+    # Schedule relation resolution as a background task for new entities
+    # This prevents blocking the API response while resolving potentially many relations
     if created:
-        try:
-            await sync_service.resolve_relations()
-            logger.debug(f"Resolved relations after creating entity: {entity.permalink}")
-        except Exception as e:  # pragma: no cover
-            # Don't fail the entire request if relation resolution fails
-            logger.warning(f"Failed to resolve relations after entity creation: {e}")
+        background_tasks.add_task(
+            resolve_relations_background, sync_service, entity.id, entity.permalink or ""
+        )
 
     result = EntityResponse.model_validate(entity)
 

src/basic_memory/api/routers/project_router.py

@@ -1,19 +1,27 @@
 """Router for project management."""
 
 import os
-from fastapi import APIRouter, HTTPException, Path, Body
+from fastapi import APIRouter, HTTPException, Path, Body, BackgroundTasks, Response, Query
 from typing import Optional
+from loguru import logger
 
-from basic_memory.deps import ProjectServiceDep, ProjectPathDep
-from basic_memory.schemas import ProjectInfoResponse
+from basic_memory.deps import (
+    ProjectConfigDep,
+    ProjectServiceDep,
+    ProjectPathDep,
+    SyncServiceDep,
+)
+from basic_memory.schemas import ProjectInfoResponse, SyncReportResponse
 from basic_memory.schemas.project_info import (
     ProjectList,
     ProjectItem,
     ProjectInfoRequest,
     ProjectStatusResponse,
 )
+from basic_memory.utils import normalize_project_path
 
 # Router for resources in a specific project
+# The ProjectPathDep is used in the path as a prefix, so the request path is like /{project}/project/info
 project_router = APIRouter(prefix="/project", tags=["project"])
 
 # Router for managing project resources
@@ -29,6 +37,25 @@ async def get_project_info(
     return await project_service.get_project_info(project)
 
 
+@project_router.get("/item", response_model=ProjectItem)
+async def get_project(
+    project_service: ProjectServiceDep,
+    project: ProjectPathDep,
+) -> ProjectItem:
+    """Get bassic info about the specified Basic Memory project."""
+    found_project = await project_service.get_project(project)
+    if not found_project:
+        raise HTTPException(
+            status_code=404, detail=f"Project: '{project}' does not exist"
+        )  # pragma: no cover
+
+    return ProjectItem(
+        name=found_project.name,
+        path=normalize_project_path(found_project.path),
+        is_default=found_project.is_default or False,
+    )
+
+
 # Update a project
 @project_router.patch("/{name}", response_model=ProjectStatusResponse)
 async def update_project(
@@ -77,6 +104,73 @@ async def update_project(
         raise HTTPException(status_code=400, detail=str(e))
 
 
+# Sync project filesystem
+@project_router.post("/sync")
+async def sync_project(
+    background_tasks: BackgroundTasks,
+    sync_service: SyncServiceDep,
+    project_config: ProjectConfigDep,
+    force_full: bool = Query(
+        False, description="Force full scan, bypassing watermark optimization"
+    ),
+    run_in_background: bool = Query(True, description="Run in background"),
+):
+    """Force project filesystem sync to database.
+
+    Scans the project directory and updates the database with any new or modified files.
+
+    Args:
+        background_tasks: FastAPI background tasks
+        sync_service: Sync service for this project
+        project_config: Project configuration
+        force_full: If True, force a full scan even if watermark exists
+        run_in_background: If True, run sync in background and return immediately
+
+    Returns:
+        Response confirming sync was initiated (background) or SyncReportResponse (foreground)
+    """
+    if run_in_background:
+        background_tasks.add_task(
+            sync_service.sync, project_config.home, project_config.name, force_full=force_full
+        )
+        logger.info(
+            f"Filesystem sync initiated for project: {project_config.name} (force_full={force_full})"
+        )
+
+        return {
+            "status": "sync_started",
+            "message": f"Filesystem sync initiated for project '{project_config.name}'",
+        }
+    else:
+        report = await sync_service.sync(
+            project_config.home, project_config.name, force_full=force_full
+        )
+        logger.info(
+            f"Filesystem sync completed for project: {project_config.name} (force_full={force_full})"
+        )
+        return SyncReportResponse.from_sync_report(report)
+
+
+@project_router.post("/status", response_model=SyncReportResponse)
+async def project_sync_status(
+    sync_service: SyncServiceDep,
+    project_config: ProjectConfigDep,
+) -> SyncReportResponse:
+    """Scan directory for changes compared to database state.
+
+    Args:
+        sync_service: Sync service for this project
+        project_config: Project configuration
+
+    Returns:
+        Scan report with details on files that need syncing
+    """
+    logger.info(f"Scanning filesystem for project: {project_config.name}")
+    sync_report = await sync_service.scan(project_config.home)
+
+    return SyncReportResponse.from_sync_report(sync_report)
+
+
 # List all available projects
 @project_resource_router.get("/projects", response_model=ProjectList)
 async def list_projects(
@@ -93,7 +187,7 @@ async def list_projects(
     project_items = [
         ProjectItem(
             name=project.name,
-            path=project.path,
+            path=normalize_project_path(project.path),
             is_default=project.is_default or False,
         )
         for project in projects
@@ -106,8 +200,9 @@ async def list_projects(
 
 
 # Add a new project
-@project_resource_router.post("/projects", response_model=ProjectStatusResponse)
+@project_resource_router.post("/projects", response_model=ProjectStatusResponse, status_code=201)
 async def add_project(
+    response: Response,
     project_data: ProjectInfoRequest,
     project_service: ProjectServiceDep,
 ) -> ProjectStatusResponse:
@@ -119,7 +214,38 @@ async def add_project(
     Returns:
         Response confirming the project was added
     """
+    # Check if project already exists before attempting to add
+    existing_project = await project_service.get_project(project_data.name)
+    if existing_project:
+        # Project exists - check if paths match for true idempotency
+        # Normalize paths for comparison (resolve symlinks, etc.)
+        from pathlib import Path
+
+        requested_path = Path(project_data.path).resolve()
+        existing_path = Path(existing_project.path).resolve()
+
+        if requested_path == existing_path:
+            # Same name, same path - return 200 OK (idempotent)
+            response.status_code = 200
+            return ProjectStatusResponse(  # pyright: ignore [reportCallIssue]
+                message=f"Project '{project_data.name}' already exists",
+                status="success",
+                default=existing_project.is_default or False,
+                new_project=ProjectItem(
+                    name=existing_project.name,
+                    path=existing_project.path,
+                    is_default=existing_project.is_default or False,
+                ),
+            )
+        else:
+            # Same name, different path - this is an error
+            raise HTTPException(
+                status_code=400,
+                detail=f"Project '{project_data.name}' already exists with different path. Existing: {existing_project.path}, Requested: {project_data.path}",
+            )
+
     try:  # pragma: no cover
+        # The service layer now handles cloud mode validation and path sanitization
         await project_service.add_project(
             project_data.name, project_data.path, set_default=project_data.set_default
         )
@@ -141,11 +267,15 @@ async def add_project(
 async def remove_project(
     project_service: ProjectServiceDep,
     name: str = Path(..., description="Name of the project to remove"),
+    delete_notes: bool = Query(
+        False, description="If True, delete project directory from filesystem"
+    ),
 ) -> ProjectStatusResponse:
     """Remove a project from configuration and database.
 
     Args:
         name: The name of the project to remove
+        delete_notes: If True, delete the project directory from the filesystem
 
     Returns:
         Response confirming the project was removed
@@ -157,7 +287,20 @@ async def remove_project(
                 status_code=404, detail=f"Project: '{name}' does not exist"
             )  # pragma: no cover
 
-        await project_service.remove_project(name)
+        # Check if trying to delete the default project
+        if name == project_service.default_project:
+            available_projects = await project_service.list_projects()
+            other_projects = [p.name for p in available_projects if p.name != name]
+            detail = f"Cannot delete default project '{name}'. "
+            if other_projects:
+                detail += (
+                    f"Set another project as default first. Available: {', '.join(other_projects)}"
+                )
+            else:
+                detail += "This is the only project in your configuration."
+            raise HTTPException(status_code=400, detail=detail)
+
+        await project_service.remove_project(name, delete_notes=delete_notes)
 
         return ProjectStatusResponse(
             message=f"Project '{name}' removed successfully",
@@ -217,8 +360,29 @@ async def set_default_project(
         raise HTTPException(status_code=400, detail=str(e))
 
 
+# Get the default project
+@project_resource_router.get("/default", response_model=ProjectItem)
+async def get_default_project(
+    project_service: ProjectServiceDep,
+) -> ProjectItem:
+    """Get the default project.
+
+    Returns:
+        Response with project default information
+    """
+    # Get the old default project
+    default_name = project_service.default_project
+    default_project = await project_service.get_project(default_name)
+    if not default_project:  # pragma: no cover
+        raise HTTPException(  # pragma: no cover
+            status_code=404, detail=f"Default Project: '{default_name}' does not exist"
+        )
+
+    return ProjectItem(name=default_project.name, path=default_project.path, is_default=True)
+
+
 # Synchronize projects between config and database
-@project_resource_router.post("/sync", response_model=ProjectStatusResponse)
+@project_resource_router.post("/config/sync", response_model=ProjectStatusResponse)
 async def synchronize_projects(
     project_service: ProjectServiceDep,
 ) -> ProjectStatusResponse:

src/basic_memory/api/routers/resource_router.py

@@ -151,6 +151,20 @@ async def write_resource(
     try:
         # Get content from request body
 
+        # Defensive type checking: ensure content is a string
+        # FastAPI should validate this, but if a dict somehow gets through
+        # (e.g., via JSON body parsing), we need to catch it here
+        if isinstance(content, dict):
+            logger.error(
+                f"Error writing resource {file_path}: "
+                f"content is a dict, expected string. Keys: {list(content.keys())}"
+            )
+            raise HTTPException(
+                status_code=400,
+                detail="content must be a string, not a dict. "
+                "Ensure request body is sent as raw string content, not JSON object.",
+            )
+
         # Ensure it's UTF-8 string content
         if isinstance(content, bytes):  # pragma: no cover
             content_str = content.decode("utf-8")

src/basic_memory/cli/app.py

@@ -2,8 +2,7 @@ from typing import Optional
 
 import typer
 
-from basic_memory.config import get_project_config, ConfigManager
-from basic_memory.mcp.project_session import session
+from basic_memory.config import ConfigManager
 
 
 def version_callback(value: bool) -> None:
@@ -11,10 +10,7 @@ def version_callback(value: bool) -> None:
     if value:  # pragma: no cover
         import basic_memory
 
-        config = get_project_config()
         typer.echo(f"Basic Memory version: {basic_memory.__version__}")
-        typer.echo(f"Current project: {config.project}")
-        typer.echo(f"Project path: {config.home}")
         raise typer.Exit()
 
 
@@ -24,13 +20,6 @@ app = typer.Typer(name="basic-memory")
 @app.callback()
 def app_callback(
     ctx: typer.Context,
-    project: Optional[str] = typer.Option(
-        None,
-        "--project",
-        "-p",
-        help="Specify which project to use 1",
-        envvar="BASIC_MEMORY_PROJECT",
-    ),
     version: Optional[bool] = typer.Option(
         None,
         "--version",
@@ -49,25 +38,17 @@ def app_callback(
         app_config = ConfigManager().config
         ensure_initialization(app_config)
 
-        # Initialize MCP session with the specified project or default
-        if project:  # pragma: no cover
-            # Use the project specified via --project flag
-            current_project_config = get_project_config(project)
-            session.set_current_project(current_project_config.name)
-
-            # Update the global config to use this project
-            from basic_memory.config import update_current_project
-
-            update_current_project(project)
-        else:
-            # Use the default project
-            current_project = app_config.default_project
-            session.set_current_project(current_project)
-
 
+## import
 # Register sub-command groups
 import_app = typer.Typer(help="Import data from various sources")
 app.add_typer(import_app, name="import")
 
-claude_app = typer.Typer()
+claude_app = typer.Typer(help="Import Conversations from Claude JSON export.")
 import_app.add_typer(claude_app, name="claude")
+
+
+## cloud
+
+cloud_app = typer.Typer(help="Access Basic Memory Cloud")
+app.add_typer(cloud_app, name="cloud")

src/basic_memory/cli/auth.py

@@ -0,0 +1,277 @@
+"""WorkOS OAuth Device Authorization for CLI."""
+
+import base64
+import hashlib
+import json
+import os
+import secrets
+import time
+import webbrowser
+
+import httpx
+from rich.console import Console
+
+from basic_memory.config import ConfigManager
+
+console = Console()
+
+
+class CLIAuth:
+    """Handles WorkOS OAuth Device Authorization for CLI tools."""
+
+    def __init__(self, client_id: str, authkit_domain: str):
+        self.client_id = client_id
+        self.authkit_domain = authkit_domain
+        app_config = ConfigManager().config
+        # Store tokens in data dir
+        self.token_file = app_config.data_dir_path / "basic-memory-cloud.json"
+        # PKCE parameters
+        self.code_verifier = None
+        self.code_challenge = None
+
+    def generate_pkce_pair(self) -> tuple[str, str]:
+        """Generate PKCE code verifier and challenge."""
+        # Generate code verifier (43-128 characters)
+        code_verifier = base64.urlsafe_b64encode(secrets.token_bytes(32)).decode("utf-8")
+        code_verifier = code_verifier.rstrip("=")
+
+        # Generate code challenge (SHA256 hash of verifier)
+        challenge_bytes = hashlib.sha256(code_verifier.encode("utf-8")).digest()
+        code_challenge = base64.urlsafe_b64encode(challenge_bytes).decode("utf-8")
+        code_challenge = code_challenge.rstrip("=")
+
+        return code_verifier, code_challenge
+
+    async def request_device_authorization(self) -> dict | None:
+        """Request device authorization from WorkOS with PKCE."""
+        device_auth_url = f"{self.authkit_domain}/oauth2/device_authorization"
+
+        # Generate PKCE pair
+        self.code_verifier, self.code_challenge = self.generate_pkce_pair()
+
+        data = {
+            "client_id": self.client_id,
+            "scope": "openid profile email offline_access",
+            "code_challenge": self.code_challenge,
+            "code_challenge_method": "S256",
+        }
+
+        try:
+            async with httpx.AsyncClient() as client:
+                response = await client.post(device_auth_url, data=data)
+
+                if response.status_code == 200:
+                    return response.json()
+                else:
+                    console.print(
+                        f"[red]Device authorization failed: {response.status_code} - {response.text}[/red]"
+                    )
+                    return None
+        except Exception as e:
+            console.print(f"[red]Device authorization error: {e}[/red]")
+            return None
+
+    def display_user_instructions(self, device_response: dict) -> None:
+        """Display user instructions for device authorization."""
+        user_code = device_response["user_code"]
+        verification_uri = device_response["verification_uri"]
+        verification_uri_complete = device_response.get("verification_uri_complete")
+
+        console.print("\n[bold blue]Authentication Required[/bold blue]")
+        console.print("\nTo authenticate, please visit:")
+        console.print(f"[bold cyan]{verification_uri}[/bold cyan]")
+        console.print(f"\nAnd enter this code: [bold yellow]{user_code}[/bold yellow]")
+
+        if verification_uri_complete:
+            console.print("\nOr for one-click access, visit:")
+            console.print(f"[bold green]{verification_uri_complete}[/bold green]")
+
+            # Try to open browser automatically
+            try:
+                console.print("\n[dim]Opening browser automatically...[/dim]")
+                webbrowser.open(verification_uri_complete)
+            except Exception:
+                pass  # Silently fail if browser can't be opened
+
+        console.print("\n[dim]Waiting for you to complete authentication in your browser...[/dim]")
+
+    async def poll_for_token(self, device_code: str, interval: int = 5) -> dict | None:
+        """Poll the token endpoint until user completes authentication."""
+        token_url = f"{self.authkit_domain}/oauth2/token"
+
+        data = {
+            "client_id": self.client_id,
+            "device_code": device_code,
+            "grant_type": "urn:ietf:params:oauth:grant-type:device_code",
+            "code_verifier": self.code_verifier,
+        }
+
+        max_attempts = 60  # 5 minutes with 5-second intervals
+        current_interval = interval
+
+        for _attempt in range(max_attempts):
+            try:
+                async with httpx.AsyncClient() as client:
+                    response = await client.post(token_url, data=data)
+
+                    if response.status_code == 200:
+                        return response.json()
+
+                    # Parse error response
+                    try:
+                        error_data = response.json()
+                        error = error_data.get("error")
+                    except Exception:
+                        error = "unknown_error"
+
+                    if error == "authorization_pending":
+                        # User hasn't completed auth yet, keep polling
+                        pass
+                    elif error == "slow_down":
+                        # Increase polling interval
+                        current_interval += 5
+                        console.print("[yellow]Slowing down polling rate...[/yellow]")
+                    elif error == "access_denied":
+                        console.print("[red]Authentication was denied by user[/red]")
+                        return None
+                    elif error == "expired_token":
+                        console.print("[red]Device code has expired. Please try again.[/red]")
+                        return None
+                    else:
+                        console.print(f"[red]Token polling error: {error}[/red]")
+                        return None
+
+            except Exception as e:
+                console.print(f"[red]Token polling request error: {e}[/red]")
+
+            # Wait before next poll
+            await self._async_sleep(current_interval)
+
+        console.print("[red]Authentication timeout. Please try again.[/red]")
+        return None
+
+    async def _async_sleep(self, seconds: int) -> None:
+        """Async sleep utility."""
+        import asyncio
+
+        await asyncio.sleep(seconds)
+
+    def save_tokens(self, tokens: dict) -> None:
+        """Save tokens to project root as .bm-auth.json."""
+        token_data = {
+            "access_token": tokens["access_token"],
+            "refresh_token": tokens.get("refresh_token"),
+            "expires_at": int(time.time()) + tokens.get("expires_in", 3600),
+            "token_type": tokens.get("token_type", "Bearer"),
+        }
+
+        with open(self.token_file, "w") as f:
+            json.dump(token_data, f, indent=2)
+
+        # Secure the token file
+        os.chmod(self.token_file, 0o600)
+
+        console.print(f"[green]Tokens saved to {self.token_file}[/green]")
+
+    def load_tokens(self) -> dict | None:
+        """Load tokens from .bm-auth.json file."""
+        if not self.token_file.exists():
+            return None
+
+        try:
+            with open(self.token_file) as f:
+                return json.load(f)
+        except (OSError, json.JSONDecodeError):
+            return None
+
+    def is_token_valid(self, tokens: dict) -> bool:
+        """Check if stored token is still valid."""
+        expires_at = tokens.get("expires_at", 0)
+        # Add 60 second buffer for clock skew
+        return time.time() < (expires_at - 60)
+
+    async def refresh_token(self, refresh_token: str) -> dict | None:
+        """Refresh access token using refresh token."""
+        token_url = f"{self.authkit_domain}/oauth2/token"
+
+        data = {
+            "client_id": self.client_id,
+            "grant_type": "refresh_token",
+            "refresh_token": refresh_token,
+        }
+
+        try:
+            async with httpx.AsyncClient() as client:
+                response = await client.post(token_url, data=data)
+
+                if response.status_code == 200:
+                    return response.json()
+                else:
+                    console.print(
+                        f"[red]Token refresh failed: {response.status_code} - {response.text}[/red]"
+                    )
+                    return None
+        except Exception as e:
+            console.print(f"[red]Token refresh error: {e}[/red]")
+            return None
+
+    async def get_valid_token(self) -> str | None:
+        """Get valid access token, refresh if needed."""
+        tokens = self.load_tokens()
+        if not tokens:
+            return None
+
+        if self.is_token_valid(tokens):
+            return tokens["access_token"]
+
+        # Token expired - try to refresh if we have a refresh token
+        refresh_token = tokens.get("refresh_token")
+        if refresh_token:
+            console.print("[yellow]Access token expired, refreshing...[/yellow]")
+
+            new_tokens = await self.refresh_token(refresh_token)
+            if new_tokens:
+                # Save new tokens (may include rotated refresh token)
+                self.save_tokens(new_tokens)
+                console.print("[green]Token refreshed successfully[/green]")
+                return new_tokens["access_token"]
+            else:
+                console.print("[yellow]Token refresh failed. Please run 'login' again.[/yellow]")
+                return None
+        else:
+            console.print("[yellow]No refresh token available. Please run 'login' again.[/yellow]")
+            return None
+
+    async def login(self) -> bool:
+        """Perform OAuth Device Authorization login flow."""
+        console.print("[blue]Initiating authentication...[/blue]")
+
+        # Step 1: Request device authorization
+        device_response = await self.request_device_authorization()
+        if not device_response:
+            return False
+
+        # Step 2: Display user instructions
+        self.display_user_instructions(device_response)
+
+        # Step 3: Poll for token
+        device_code = device_response["device_code"]
+        interval = device_response.get("interval", 5)
+
+        tokens = await self.poll_for_token(device_code, interval)
+        if not tokens:
+            return False
+
+        # Step 4: Save tokens
+        self.save_tokens(tokens)
+
+        console.print("\n[green]Successfully authenticated with Basic Memory Cloud![/green]")
+        return True
+
+    def logout(self) -> None:
+        """Remove stored authentication tokens."""
+        if self.token_file.exists():
+            self.token_file.unlink()
+            console.print("[green]Logged out successfully[/green]")
+        else:
+            console.print("[yellow]No stored authentication found[/yellow]")

src/basic_memory/cli/commands/__init__.py

@@ -1,11 +1,10 @@
 """CLI commands for basic-memory."""
 
-from . import status, sync, db, import_memory_json, mcp, import_claude_conversations
+from . import status, db, import_memory_json, mcp, import_claude_conversations
 from . import import_claude_projects, import_chatgpt, tool, project
 
 __all__ = [
     "status",
-    "sync",
     "db",
     "import_memory_json",
     "mcp",

src/basic_memory/cli/commands/cloud/__init__.py

@@ -0,0 +1,6 @@
+"""Cloud commands package."""
+
+# Import all commands to register them with typer
+from basic_memory.cli.commands.cloud.core_commands import *  # noqa: F401,F403
+from basic_memory.cli.commands.cloud.api_client import get_authenticated_headers, get_cloud_config  # noqa: F401
+from basic_memory.cli.commands.cloud.upload_command import *  # noqa: F401,F403

src/basic_memory/cli/commands/cloud/api_client.py

@@ -0,0 +1,112 @@
+"""Cloud API client utilities."""
+
+from typing import Optional
+
+import httpx
+import typer
+from rich.console import Console
+
+from basic_memory.cli.auth import CLIAuth
+from basic_memory.config import ConfigManager
+
+console = Console()
+
+
+class CloudAPIError(Exception):
+    """Exception raised for cloud API errors."""
+
+    def __init__(
+        self, message: str, status_code: Optional[int] = None, detail: Optional[dict] = None
+    ):
+        super().__init__(message)
+        self.status_code = status_code
+        self.detail = detail or {}
+
+
+class SubscriptionRequiredError(CloudAPIError):
+    """Exception raised when user needs an active subscription."""
+
+    def __init__(self, message: str, subscribe_url: str):
+        super().__init__(message, status_code=403, detail={"error": "subscription_required"})
+        self.subscribe_url = subscribe_url
+
+
+def get_cloud_config() -> tuple[str, str, str]:
+    """Get cloud OAuth configuration from config."""
+    config_manager = ConfigManager()
+    config = config_manager.config
+    return config.cloud_client_id, config.cloud_domain, config.cloud_host
+
+
+async def get_authenticated_headers() -> dict[str, str]:
+    """
+    Get authentication headers with JWT token.
+    handles jwt refresh if needed.
+    """
+    client_id, domain, _ = get_cloud_config()
+    auth = CLIAuth(client_id=client_id, authkit_domain=domain)
+    token = await auth.get_valid_token()
+    if not token:
+        console.print("[red]Not authenticated. Please run 'basic-memory cloud login' first.[/red]")
+        raise typer.Exit(1)
+
+    return {"Authorization": f"Bearer {token}"}
+
+
+async def make_api_request(
+    method: str,
+    url: str,
+    headers: Optional[dict] = None,
+    json_data: Optional[dict] = None,
+    timeout: float = 30.0,
+) -> httpx.Response:
+    """Make an API request to the cloud service."""
+    headers = headers or {}
+    auth_headers = await get_authenticated_headers()
+    headers.update(auth_headers)
+    # Add debug headers to help with compression issues
+    headers.setdefault("Accept-Encoding", "identity")  # Disable compression for debugging
+
+    async with httpx.AsyncClient(timeout=timeout) as client:
+        try:
+            response = await client.request(method=method, url=url, headers=headers, json=json_data)
+            response.raise_for_status()
+            return response
+        except httpx.HTTPError as e:
+            # Check if this is a response error with response details
+            if hasattr(e, "response") and e.response is not None:  # pyright: ignore [reportAttributeAccessIssue]
+                response = e.response  # type: ignore
+
+                # Try to parse error detail from response
+                error_detail = None
+                try:
+                    error_detail = response.json()
+                except Exception:
+                    # If JSON parsing fails, we'll handle it as a generic error
+                    pass
+
+                # Check for subscription_required error (403)
+                if response.status_code == 403 and isinstance(error_detail, dict):
+                    # Handle both FastAPI HTTPException format (nested under "detail")
+                    # and direct format
+                    detail_obj = error_detail.get("detail", error_detail)
+                    if (
+                        isinstance(detail_obj, dict)
+                        and detail_obj.get("error") == "subscription_required"
+                    ):
+                        message = detail_obj.get("message", "Active subscription required")
+                        subscribe_url = detail_obj.get(
+                            "subscribe_url", "https://basicmemory.com/subscribe"
+                        )
+                        raise SubscriptionRequiredError(
+                            message=message, subscribe_url=subscribe_url
+                        ) from e
+
+                # Raise generic CloudAPIError with status code and detail
+                raise CloudAPIError(
+                    f"API request failed: {e}",
+                    status_code=response.status_code,
+                    detail=error_detail if isinstance(error_detail, dict) else {},
+                ) from e
+
+            raise CloudAPIError(f"API request failed: {e}") from e

src/basic_memory/cli/commands/cloud/bisync_commands.py

@@ -0,0 +1,110 @@
+"""Cloud bisync utility functions for Basic Memory CLI."""
+
+from pathlib import Path
+
+from basic_memory.cli.commands.cloud.api_client import make_api_request
+from basic_memory.config import ConfigManager
+from basic_memory.ignore_utils import create_default_bmignore, get_bmignore_path
+from basic_memory.schemas.cloud import MountCredentials, TenantMountInfo
+
+
+class BisyncError(Exception):
+    """Exception raised for bisync-related errors."""
+
+    pass
+
+
+async def get_mount_info() -> TenantMountInfo:
+    """Get current tenant information from cloud API."""
+    try:
+        config_manager = ConfigManager()
+        config = config_manager.config
+        host_url = config.cloud_host.rstrip("/")
+
+        response = await make_api_request(method="GET", url=f"{host_url}/tenant/mount/info")
+
+        return TenantMountInfo.model_validate(response.json())
+    except Exception as e:
+        raise BisyncError(f"Failed to get tenant info: {e}") from e
+
+
+async def generate_mount_credentials(tenant_id: str) -> MountCredentials:
+    """Generate scoped credentials for syncing."""
+    try:
+        config_manager = ConfigManager()
+        config = config_manager.config
+        host_url = config.cloud_host.rstrip("/")
+
+        response = await make_api_request(method="POST", url=f"{host_url}/tenant/mount/credentials")
+
+        return MountCredentials.model_validate(response.json())
+    except Exception as e:
+        raise BisyncError(f"Failed to generate credentials: {e}") from e
+
+
+def convert_bmignore_to_rclone_filters() -> Path:
+    """Convert .bmignore patterns to rclone filter format.
+
+    Reads ~/.basic-memory/.bmignore (gitignore-style) and converts to
+    ~/.basic-memory/.bmignore.rclone (rclone filter format).
+
+    Only regenerates if .bmignore has been modified since last conversion.
+
+    Returns:
+        Path to converted rclone filter file
+    """
+    # Ensure .bmignore exists
+    create_default_bmignore()
+
+    bmignore_path = get_bmignore_path()
+    # Create rclone filter path: ~/.basic-memory/.bmignore -> ~/.basic-memory/.bmignore.rclone
+    rclone_filter_path = bmignore_path.parent / f"{bmignore_path.name}.rclone"
+
+    # Skip regeneration if rclone file is newer than bmignore
+    if rclone_filter_path.exists():
+        bmignore_mtime = bmignore_path.stat().st_mtime
+        rclone_mtime = rclone_filter_path.stat().st_mtime
+        if rclone_mtime >= bmignore_mtime:
+            return rclone_filter_path
+
+    # Read .bmignore patterns
+    patterns = []
+    try:
+        with bmignore_path.open("r", encoding="utf-8") as f:
+            for line in f:
+                line = line.strip()
+                # Keep comments and empty lines
+                if not line or line.startswith("#"):
+                    patterns.append(line)
+                    continue
+
+                # Convert gitignore pattern to rclone filter syntax
+                # gitignore: node_modules  → rclone: - node_modules/**
+                # gitignore: *.pyc        → rclone: - *.pyc
+                if "*" in line:
+                    # Pattern already has wildcard, just add exclude prefix
+                    patterns.append(f"- {line}")
+                else:
+                    # Directory pattern - add /** for recursive exclude
+                    patterns.append(f"- {line}/**")
+
+    except Exception:
+        # If we can't read the file, create a minimal filter
+        patterns = ["# Error reading .bmignore, using minimal filters", "- .git/**"]
+
+    # Write rclone filter file
+    rclone_filter_path.write_text("\n".join(patterns) + "\n")
+
+    return rclone_filter_path
+
+
+def get_bisync_filter_path() -> Path:
+    """Get path to bisync filter file.
+
+    Uses ~/.basic-memory/.bmignore (converted to rclone format).
+    The file is automatically created with default patterns on first use.
+
+    Returns:
+        Path to rclone filter file
+    """
+    return convert_bmignore_to_rclone_filters()

src/basic_memory/cli/commands/cloud/cloud_utils.py

@@ -0,0 +1,101 @@
+"""Shared utilities for cloud operations."""
+
+from basic_memory.cli.commands.cloud.api_client import make_api_request
+from basic_memory.config import ConfigManager
+from basic_memory.schemas.cloud import (
+    CloudProjectList,
+    CloudProjectCreateRequest,
+    CloudProjectCreateResponse,
+)
+from basic_memory.utils import generate_permalink
+
+
+class CloudUtilsError(Exception):
+    """Exception raised for cloud utility errors."""
+
+    pass
+
+
+async def fetch_cloud_projects() -> CloudProjectList:
+    """Fetch list of projects from cloud API.
+
+    Returns:
+        CloudProjectList with projects from cloud
+    """
+    try:
+        config_manager = ConfigManager()
+        config = config_manager.config
+        host_url = config.cloud_host.rstrip("/")
+
+        response = await make_api_request(method="GET", url=f"{host_url}/proxy/projects/projects")
+
+        return CloudProjectList.model_validate(response.json())
+    except Exception as e:
+        raise CloudUtilsError(f"Failed to fetch cloud projects: {e}") from e
+
+
+async def create_cloud_project(project_name: str) -> CloudProjectCreateResponse:
+    """Create a new project on cloud.
+
+    Args:
+        project_name: Name of project to create
+
+    Returns:
+        CloudProjectCreateResponse with project details from API
+    """
+    try:
+        config_manager = ConfigManager()
+        config = config_manager.config
+        host_url = config.cloud_host.rstrip("/")
+
+        # Use generate_permalink to ensure consistent naming
+        project_path = generate_permalink(project_name)
+
+        project_data = CloudProjectCreateRequest(
+            name=project_name,
+            path=project_path,
+            set_default=False,
+        )
+
+        response = await make_api_request(
+            method="POST",
+            url=f"{host_url}/proxy/projects/projects",
+            headers={"Content-Type": "application/json"},
+            json_data=project_data.model_dump(),
+        )
+
+        return CloudProjectCreateResponse.model_validate(response.json())
+    except Exception as e:
+        raise CloudUtilsError(f"Failed to create cloud project '{project_name}': {e}") from e
+
+
+async def sync_project(project_name: str, force_full: bool = False) -> None:
+    """Trigger sync for a specific project on cloud.
+
+    Args:
+        project_name: Name of project to sync
+        force_full: If True, force a full scan bypassing watermark optimization
+    """
+    try:
+        from basic_memory.cli.commands.command_utils import run_sync
+
+        await run_sync(project=project_name, force_full=force_full)
+    except Exception as e:
+        raise CloudUtilsError(f"Failed to sync project '{project_name}': {e}") from e
+
+
+async def project_exists(project_name: str) -> bool:
+    """Check if a project exists on cloud.
+
+    Args:
+        project_name: Name of project to check
+
+    Returns:
+        True if project exists, False otherwise
+    """
+    try:
+        projects = await fetch_cloud_projects()
+        project_names = {p.name for p in projects.projects}
+        return project_name in project_names
+    except Exception:
+        return False

src/basic_memory/cli/commands/cloud/core_commands.py

@@ -0,0 +1,195 @@
+"""Core cloud commands for Basic Memory CLI."""
+
+import asyncio
+
+import typer
+from rich.console import Console
+
+from basic_memory.cli.app import cloud_app
+from basic_memory.cli.auth import CLIAuth
+from basic_memory.config import ConfigManager
+from basic_memory.cli.commands.cloud.api_client import (
+    CloudAPIError,
+    SubscriptionRequiredError,
+    get_cloud_config,
+    make_api_request,
+)
+from basic_memory.cli.commands.cloud.bisync_commands import (
+    BisyncError,
+    generate_mount_credentials,
+    get_mount_info,
+)
+from basic_memory.cli.commands.cloud.rclone_config import configure_rclone_remote
+from basic_memory.cli.commands.cloud.rclone_installer import (
+    RcloneInstallError,
+    install_rclone,
+)
+
+console = Console()
+
+
+@cloud_app.command()
+def login():
+    """Authenticate with WorkOS using OAuth Device Authorization flow and enable cloud mode."""
+
+    async def _login():
+        client_id, domain, host_url = get_cloud_config()
+        auth = CLIAuth(client_id=client_id, authkit_domain=domain)
+
+        try:
+            success = await auth.login()
+            if not success:
+                console.print("[red]Login failed[/red]")
+                raise typer.Exit(1)
+
+            # Test subscription access by calling a protected endpoint
+            console.print("[dim]Verifying subscription access...[/dim]")
+            await make_api_request("GET", f"{host_url.rstrip('/')}/proxy/health")
+
+            # Enable cloud mode after successful login and subscription validation
+            config_manager = ConfigManager()
+            config = config_manager.load_config()
+            config.cloud_mode = True
+            config_manager.save_config(config)
+
+            console.print("[green]Cloud mode enabled[/green]")
+            console.print(f"[dim]All CLI commands now work against {host_url}[/dim]")
+
+        except SubscriptionRequiredError as e:
+            console.print("\n[red]Subscription Required[/red]\n")
+            console.print(f"[yellow]{e.args[0]}[/yellow]\n")
+            console.print(f"Subscribe at: [blue underline]{e.subscribe_url}[/blue underline]\n")
+            console.print(
+                "[dim]Once you have an active subscription, run [bold]bm cloud login[/bold] again.[/dim]"
+            )
+            raise typer.Exit(1)
+
+    asyncio.run(_login())
+
+
+@cloud_app.command()
+def logout():
+    """Disable cloud mode and return to local mode."""
+
+    # Disable cloud mode
+    config_manager = ConfigManager()
+    config = config_manager.load_config()
+    config.cloud_mode = False
+    config_manager.save_config(config)
+
+    console.print("[green]Cloud mode disabled[/green]")
+    console.print("[dim]All CLI commands now work locally[/dim]")
+
+
+@cloud_app.command("status")
+def status() -> None:
+    """Check cloud mode status and cloud instance health."""
+    # Check cloud mode
+    config_manager = ConfigManager()
+    config = config_manager.load_config()
+
+    console.print("[bold blue]Cloud Mode Status[/bold blue]")
+    if config.cloud_mode:
+        console.print("  Mode: [green]Cloud (enabled)[/green]")
+        console.print(f"  Host: {config.cloud_host}")
+        console.print("  [dim]All CLI commands work against cloud[/dim]")
+    else:
+        console.print("  Mode: [yellow]Local (disabled)[/yellow]")
+        console.print("  [dim]All CLI commands work locally[/dim]")
+        console.print("\n[dim]To enable cloud mode, run: bm cloud login[/dim]")
+        return
+
+    # Get cloud configuration
+    _, _, host_url = get_cloud_config()
+    host_url = host_url.rstrip("/")
+
+    # Prepare headers
+    headers = {}
+
+    try:
+        console.print("\n[blue]Checking cloud instance health...[/blue]")
+
+        # Make API request to check health
+        response = asyncio.run(
+            make_api_request(method="GET", url=f"{host_url}/proxy/health", headers=headers)
+        )
+
+        health_data = response.json()
+
+        console.print("[green]Cloud instance is healthy[/green]")
+
+        # Display status details
+        if "status" in health_data:
+            console.print(f"  Status: {health_data['status']}")
+        if "version" in health_data:
+            console.print(f"  Version: {health_data['version']}")
+        if "timestamp" in health_data:
+            console.print(f"  Timestamp: {health_data['timestamp']}")
+
+        console.print("\n[dim]To sync projects, use: bm project bisync --name <project>[/dim]")
+
+    except CloudAPIError as e:
+        console.print(f"[red]Error checking cloud health: {e}[/red]")
+        raise typer.Exit(1)
+    except Exception as e:
+        console.print(f"[red]Unexpected error: {e}[/red]")
+        raise typer.Exit(1)
+
+
+@cloud_app.command("setup")
+def setup() -> None:
+    """Set up cloud sync by installing rclone and configuring credentials.
+
+    SPEC-20: Simplified to project-scoped workflow.
+    After setup, use project commands for syncing:
+      bm project add <name> <path> --local-path ~/projects/<name>
+      bm project bisync --name <name> --resync  # First time
+      bm project bisync --name <name>            # Subsequent syncs
+    """
+    console.print("[bold blue]Basic Memory Cloud Setup[/bold blue]")
+    console.print("Setting up cloud sync with rclone...\n")
+
+    try:
+        # Step 1: Install rclone
+        console.print("[blue]Step 1: Installing rclone...[/blue]")
+        install_rclone()
+
+        # Step 2: Get tenant info
+        console.print("\n[blue]Step 2: Getting tenant information...[/blue]")
+        tenant_info = asyncio.run(get_mount_info())
+        console.print(f"[green]Found tenant: {tenant_info.tenant_id}[/green]")
+
+        # Step 3: Generate credentials
+        console.print("\n[blue]Step 3: Generating sync credentials...[/blue]")
+        creds = asyncio.run(generate_mount_credentials(tenant_info.tenant_id))
+        console.print("[green]Generated secure credentials[/green]")
+
+        # Step 4: Configure rclone remote
+        console.print("\n[blue]Step 4: Configuring rclone remote...[/blue]")
+        configure_rclone_remote(
+            access_key=creds.access_key,
+            secret_key=creds.secret_key,
+        )
+
+        console.print("\n[bold green]Cloud setup completed successfully![/bold green]")
+        console.print("\n[bold]Next steps:[/bold]")
+        console.print("1. Add a project with local sync path:")
+        console.print("   bm project add research --local-path ~/Documents/research")
+        console.print("\n   Or configure sync for an existing project:")
+        console.print("   bm project sync-setup research ~/Documents/research")
+        console.print("\n2. Preview the initial sync (recommended):")
+        console.print("   bm project bisync --name research --resync --dry-run")
+        console.print("\n3. If all looks good, run the actual sync:")
+        console.print("   bm project bisync --name research --resync")
+        console.print("\n4. Subsequent syncs (no --resync needed):")
+        console.print("   bm project bisync --name research")
+        console.print(
+            "\n[dim]Tip: Always use --dry-run first to preview changes before syncing[/dim]"
+        )
+
+    except (RcloneInstallError, BisyncError, CloudAPIError) as e:
+        console.print(f"\n[red]Setup failed: {e}[/red]")
+        raise typer.Exit(1)
+    except Exception as e:
+        console.print(f"\n[red]Unexpected error during setup: {e}[/red]")
+        raise typer.Exit(1)

src/basic_memory/cli/commands/cloud/rclone_commands.py

@@ -0,0 +1,299 @@
+"""Project-scoped rclone sync commands for Basic Memory Cloud.
+
+This module provides simplified, project-scoped rclone operations:
+- Each project syncs independently
+- Uses single "basic-memory-cloud" remote (not tenant-specific)
+- Balanced defaults from SPEC-8 Phase 4 testing
+- Per-project bisync state tracking
+
+Replaces tenant-wide sync with project-scoped workflows.
+"""
+
+import subprocess
+from dataclasses import dataclass
+from pathlib import Path
+from typing import Optional
+
+from rich.console import Console
+
+from basic_memory.utils import normalize_project_path
+
+console = Console()
+
+
+class RcloneError(Exception):
+    """Exception raised for rclone command errors."""
+
+    pass
+
+
+@dataclass
+class SyncProject:
+    """Project configured for cloud sync.
+
+    Attributes:
+        name: Project name
+        path: Cloud path (e.g., "app/data/research")
+        local_sync_path: Local directory for syncing (optional)
+    """
+
+    name: str
+    path: str
+    local_sync_path: Optional[str] = None
+
+
+def get_bmignore_filter_path() -> Path:
+    """Get path to rclone filter file.
+
+    Uses ~/.basic-memory/.bmignore converted to rclone format.
+    File is automatically created with default patterns on first use.
+
+    Returns:
+        Path to rclone filter file
+    """
+    # Import here to avoid circular dependency
+    from basic_memory.cli.commands.cloud.bisync_commands import (
+        convert_bmignore_to_rclone_filters,
+    )
+
+    return convert_bmignore_to_rclone_filters()
+
+
+def get_project_bisync_state(project_name: str) -> Path:
+    """Get path to project's bisync state directory.
+
+    Args:
+        project_name: Name of the project
+
+    Returns:
+        Path to bisync state directory for this project
+    """
+    return Path.home() / ".basic-memory" / "bisync-state" / project_name
+
+
+def bisync_initialized(project_name: str) -> bool:
+    """Check if bisync has been initialized for this project.
+
+    Args:
+        project_name: Name of the project
+
+    Returns:
+        True if bisync state exists, False otherwise
+    """
+    state_path = get_project_bisync_state(project_name)
+    return state_path.exists() and any(state_path.iterdir())
+
+
+def get_project_remote(project: SyncProject, bucket_name: str) -> str:
+    """Build rclone remote path for project.
+
+    Args:
+        project: Project with cloud path
+        bucket_name: S3 bucket name
+
+    Returns:
+        Remote path like "basic-memory-cloud:bucket-name/basic-memory-llc"
+
+    Note:
+        The API returns paths like "/app/data/basic-memory-llc" because the S3 bucket
+        is mounted at /app/data on the fly machine. We need to strip the /app/data/
+        prefix to get the actual S3 path within the bucket.
+    """
+    # Normalize path to strip /app/data/ mount point prefix
+    cloud_path = normalize_project_path(project.path).lstrip("/")
+    return f"basic-memory-cloud:{bucket_name}/{cloud_path}"
+
+
+def project_sync(
+    project: SyncProject,
+    bucket_name: str,
+    dry_run: bool = False,
+    verbose: bool = False,
+) -> bool:
+    """One-way sync: local → cloud.
+
+    Makes cloud identical to local using rclone sync.
+
+    Args:
+        project: Project to sync
+        bucket_name: S3 bucket name
+        dry_run: Preview changes without applying
+        verbose: Show detailed output
+
+    Returns:
+        True if sync succeeded, False otherwise
+
+    Raises:
+        RcloneError: If project has no local_sync_path configured
+    """
+    if not project.local_sync_path:
+        raise RcloneError(f"Project {project.name} has no local_sync_path configured")
+
+    local_path = Path(project.local_sync_path).expanduser()
+    remote_path = get_project_remote(project, bucket_name)
+    filter_path = get_bmignore_filter_path()
+
+    cmd = [
+        "rclone",
+        "sync",
+        str(local_path),
+        remote_path,
+        "--filter-from",
+        str(filter_path),
+    ]
+
+    if verbose:
+        cmd.append("--verbose")
+    else:
+        cmd.append("--progress")
+
+    if dry_run:
+        cmd.append("--dry-run")
+
+    result = subprocess.run(cmd, text=True)
+    return result.returncode == 0
+
+
+def project_bisync(
+    project: SyncProject,
+    bucket_name: str,
+    dry_run: bool = False,
+    resync: bool = False,
+    verbose: bool = False,
+) -> bool:
+    """Two-way sync: local ↔ cloud.
+
+    Uses rclone bisync with balanced defaults:
+    - conflict_resolve: newer (auto-resolve to most recent)
+    - max_delete: 25 (safety limit)
+    - check_access: false (skip for performance)
+
+    Args:
+        project: Project to sync
+        bucket_name: S3 bucket name
+        dry_run: Preview changes without applying
+        resync: Force resync to establish new baseline
+        verbose: Show detailed output
+
+    Returns:
+        True if bisync succeeded, False otherwise
+
+    Raises:
+        RcloneError: If project has no local_sync_path or needs --resync
+    """
+    if not project.local_sync_path:
+        raise RcloneError(f"Project {project.name} has no local_sync_path configured")
+
+    local_path = Path(project.local_sync_path).expanduser()
+    remote_path = get_project_remote(project, bucket_name)
+    filter_path = get_bmignore_filter_path()
+    state_path = get_project_bisync_state(project.name)
+
+    # Ensure state directory exists
+    state_path.mkdir(parents=True, exist_ok=True)
+
+    cmd = [
+        "rclone",
+        "bisync",
+        str(local_path),
+        remote_path,
+        "--create-empty-src-dirs",
+        "--resilient",
+        "--conflict-resolve=newer",
+        "--max-delete=25",
+        "--filter-from",
+        str(filter_path),
+        "--workdir",
+        str(state_path),
+    ]
+
+    if verbose:
+        cmd.append("--verbose")
+    else:
+        cmd.append("--progress")
+
+    if dry_run:
+        cmd.append("--dry-run")
+
+    if resync:
+        cmd.append("--resync")
+
+    # Check if first run requires resync
+    if not resync and not bisync_initialized(project.name) and not dry_run:
+        raise RcloneError(
+            f"First bisync for {project.name} requires --resync to establish baseline.\n"
+            f"Run: bm project bisync --name {project.name} --resync"
+        )
+
+    result = subprocess.run(cmd, text=True)
+    return result.returncode == 0
+
+
+def project_check(
+    project: SyncProject,
+    bucket_name: str,
+    one_way: bool = False,
+) -> bool:
+    """Check integrity between local and cloud.
+
+    Verifies files match without transferring data.
+
+    Args:
+        project: Project to check
+        bucket_name: S3 bucket name
+        one_way: Only check for missing files on destination (faster)
+
+    Returns:
+        True if files match, False if differences found
+
+    Raises:
+        RcloneError: If project has no local_sync_path configured
+    """
+    if not project.local_sync_path:
+        raise RcloneError(f"Project {project.name} has no local_sync_path configured")
+
+    local_path = Path(project.local_sync_path).expanduser()
+    remote_path = get_project_remote(project, bucket_name)
+    filter_path = get_bmignore_filter_path()
+
+    cmd = [
+        "rclone",
+        "check",
+        str(local_path),
+        remote_path,
+        "--filter-from",
+        str(filter_path),
+    ]
+
+    if one_way:
+        cmd.append("--one-way")
+
+    result = subprocess.run(cmd, capture_output=True, text=True)
+    return result.returncode == 0
+
+
+def project_ls(
+    project: SyncProject,
+    bucket_name: str,
+    path: Optional[str] = None,
+) -> list[str]:
+    """List files in remote project.
+
+    Args:
+        project: Project to list files from
+        bucket_name: S3 bucket name
+        path: Optional subdirectory within project
+
+    Returns:
+        List of file paths
+
+    Raises:
+        subprocess.CalledProcessError: If rclone command fails
+    """
+    remote_path = get_project_remote(project, bucket_name)
+    if path:
+        remote_path = f"{remote_path}/{path}"
+
+    cmd = ["rclone", "ls", remote_path]
+    result = subprocess.run(cmd, capture_output=True, text=True, check=True)
+    return result.stdout.splitlines()

src/basic_memory/cli/commands/cloud/rclone_config.py

@@ -0,0 +1,110 @@
+"""rclone configuration management for Basic Memory Cloud.
+
+This module provides simplified rclone configuration for SPEC-20.
+Uses a single "basic-memory-cloud" remote for all operations.
+"""
+
+import configparser
+import os
+import shutil
+from pathlib import Path
+from typing import Optional
+
+from rich.console import Console
+
+console = Console()
+
+
+class RcloneConfigError(Exception):
+    """Exception raised for rclone configuration errors."""
+
+    pass
+
+
+def get_rclone_config_path() -> Path:
+    """Get the path to rclone configuration file."""
+    config_dir = Path.home() / ".config" / "rclone"
+    config_dir.mkdir(parents=True, exist_ok=True)
+    return config_dir / "rclone.conf"
+
+
+def backup_rclone_config() -> Optional[Path]:
+    """Create a backup of existing rclone config."""
+    config_path = get_rclone_config_path()
+    if not config_path.exists():
+        return None
+
+    backup_path = config_path.with_suffix(f".conf.backup-{os.getpid()}")
+    shutil.copy2(config_path, backup_path)
+    console.print(f"[dim]Created backup: {backup_path}[/dim]")
+    return backup_path
+
+
+def load_rclone_config() -> configparser.ConfigParser:
+    """Load existing rclone configuration."""
+    config = configparser.ConfigParser()
+    config_path = get_rclone_config_path()
+
+    if config_path.exists():
+        config.read(config_path)
+
+    return config
+
+
+def save_rclone_config(config: configparser.ConfigParser) -> None:
+    """Save rclone configuration to file."""
+    config_path = get_rclone_config_path()
+
+    with open(config_path, "w") as f:
+        config.write(f)
+
+    console.print(f"[dim]Updated rclone config: {config_path}[/dim]")
+
+
+def configure_rclone_remote(
+    access_key: str,
+    secret_key: str,
+    endpoint: str = "https://fly.storage.tigris.dev",
+    region: str = "auto",
+) -> str:
+    """Configure single rclone remote named 'basic-memory-cloud'.
+
+    This is the simplified approach from SPEC-20 that uses one remote
+    for all Basic Memory cloud operations (not tenant-specific).
+
+    Args:
+        access_key: S3 access key ID
+        secret_key: S3 secret access key
+        endpoint: S3-compatible endpoint URL
+        region: S3 region (default: auto)
+
+    Returns:
+        The remote name: "basic-memory-cloud"
+    """
+    # Backup existing config
+    backup_rclone_config()
+
+    # Load existing config
+    config = load_rclone_config()
+
+    # Single remote name (not tenant-specific)
+    REMOTE_NAME = "basic-memory-cloud"
+
+    # Add/update the remote section
+    if not config.has_section(REMOTE_NAME):
+        config.add_section(REMOTE_NAME)
+
+    config.set(REMOTE_NAME, "type", "s3")
+    config.set(REMOTE_NAME, "provider", "Other")
+    config.set(REMOTE_NAME, "access_key_id", access_key)
+    config.set(REMOTE_NAME, "secret_access_key", secret_key)
+    config.set(REMOTE_NAME, "endpoint", endpoint)
+    config.set(REMOTE_NAME, "region", region)
+    # Prevent unnecessary encoding of filenames (only encode slashes and invalid UTF-8)
+    # This prevents files with spaces like "Hello World.md" from being quoted
+    config.set(REMOTE_NAME, "encoding", "Slash,InvalidUtf8")
+    # Save updated config
+    save_rclone_config(config)
+
+    console.print(f"[green]Configured rclone remote: {REMOTE_NAME}[/green]")
+    return REMOTE_NAME

src/basic_memory/cli/commands/cloud/rclone_installer.py

@@ -0,0 +1,249 @@
+"""Cross-platform rclone installation utilities."""
+
+import os
+import platform
+import shutil
+import subprocess
+from typing import Optional
+
+from rich.console import Console
+
+console = Console()
+
+
+class RcloneInstallError(Exception):
+    """Exception raised for rclone installation errors."""
+
+    pass
+
+
+def is_rclone_installed() -> bool:
+    """Check if rclone is already installed and available in PATH."""
+    return shutil.which("rclone") is not None
+
+
+def get_platform() -> str:
+    """Get the current platform identifier."""
+    system = platform.system().lower()
+    if system == "darwin":
+        return "macos"
+    elif system == "linux":
+        return "linux"
+    elif system == "windows":
+        return "windows"
+    else:
+        raise RcloneInstallError(f"Unsupported platform: {system}")
+
+
+def run_command(command: list[str], check: bool = True) -> subprocess.CompletedProcess:
+    """Run a command with proper error handling."""
+    try:
+        console.print(f"[dim]Running: {' '.join(command)}[/dim]")
+        result = subprocess.run(command, capture_output=True, text=True, check=check)
+        if result.stdout:
+            console.print(f"[dim]Output: {result.stdout.strip()}[/dim]")
+        return result
+    except subprocess.CalledProcessError as e:
+        console.print(f"[red]Command failed: {e}[/red]")
+        if e.stderr:
+            console.print(f"[red]Error output: {e.stderr}[/red]")
+        raise RcloneInstallError(f"Command failed: {e}") from e
+    except FileNotFoundError as e:
+        raise RcloneInstallError(f"Command not found: {' '.join(command)}") from e
+
+
+def install_rclone_macos() -> None:
+    """Install rclone on macOS using Homebrew or official script."""
+    # Try Homebrew first
+    if shutil.which("brew"):
+        try:
+            console.print("[blue]Installing rclone via Homebrew...[/blue]")
+            run_command(["brew", "install", "rclone"])
+            console.print("[green]rclone installed via Homebrew[/green]")
+            return
+        except RcloneInstallError:
+            console.print(
+                "[yellow]Homebrew installation failed, trying official script...[/yellow]"
+            )
+
+    # Fallback to official script
+    console.print("[blue]Installing rclone via official script...[/blue]")
+    try:
+        run_command(["sh", "-c", "curl https://rclone.org/install.sh | sudo bash"])
+        console.print("[green]rclone installed via official script[/green]")
+    except RcloneInstallError:
+        raise RcloneInstallError(
+            "Failed to install rclone. Please install manually: brew install rclone"
+        )
+
+
+def install_rclone_linux() -> None:
+    """Install rclone on Linux using package managers or official script."""
+    # Try snap first (most universal)
+    if shutil.which("snap"):
+        try:
+            console.print("[blue]Installing rclone via snap...[/blue]")
+            run_command(["sudo", "snap", "install", "rclone"])
+            console.print("[green]rclone installed via snap[/green]")
+            return
+        except RcloneInstallError:
+            console.print("[yellow]Snap installation failed, trying apt...[/yellow]")
+
+    # Try apt (Debian/Ubuntu)
+    if shutil.which("apt"):
+        try:
+            console.print("[blue]Installing rclone via apt...[/blue]")
+            run_command(["sudo", "apt", "update"])
+            run_command(["sudo", "apt", "install", "-y", "rclone"])
+            console.print("[green]rclone installed via apt[/green]")
+            return
+        except RcloneInstallError:
+            console.print("[yellow]apt installation failed, trying official script...[/yellow]")
+
+    # Fallback to official script
+    console.print("[blue]Installing rclone via official script...[/blue]")
+    try:
+        run_command(["sh", "-c", "curl https://rclone.org/install.sh | sudo bash"])
+        console.print("[green]rclone installed via official script[/green]")
+    except RcloneInstallError:
+        raise RcloneInstallError(
+            "Failed to install rclone. Please install manually: sudo snap install rclone"
+        )
+
+
+def install_rclone_windows() -> None:
+    """Install rclone on Windows using package managers."""
+    # Try winget first (built into Windows 10+)
+    if shutil.which("winget"):
+        try:
+            console.print("[blue]Installing rclone via winget...[/blue]")
+            run_command(
+                [
+                    "winget",
+                    "install",
+                    "Rclone.Rclone",
+                    "--accept-source-agreements",
+                    "--accept-package-agreements",
+                ]
+            )
+            console.print("[green]rclone installed via winget[/green]")
+            return
+        except RcloneInstallError:
+            console.print("[yellow]winget installation failed, trying chocolatey...[/yellow]")
+
+    # Try chocolatey
+    if shutil.which("choco"):
+        try:
+            console.print("[blue]Installing rclone via chocolatey...[/blue]")
+            run_command(["choco", "install", "rclone", "-y"])
+            console.print("[green]rclone installed via chocolatey[/green]")
+            return
+        except RcloneInstallError:
+            console.print("[yellow]chocolatey installation failed, trying scoop...[/yellow]")
+
+    # Try scoop
+    if shutil.which("scoop"):
+        try:
+            console.print("[blue]Installing rclone via scoop...[/blue]")
+            run_command(["scoop", "install", "rclone"])
+            console.print("[green]rclone installed via scoop[/green]")
+            return
+        except RcloneInstallError:
+            console.print("[yellow]scoop installation failed[/yellow]")
+
+    # No package manager available
+    raise RcloneInstallError(
+        "Could not install rclone automatically. Please install a package manager "
+        "(winget, chocolatey, or scoop) or install rclone manually from https://rclone.org/downloads/"
+    )
+
+
+def install_rclone(platform_override: Optional[str] = None) -> None:
+    """Install rclone for the current platform."""
+    if is_rclone_installed():
+        console.print("[green]rclone is already installed[/green]")
+        return
+
+    platform_name = platform_override or get_platform()
+    console.print(f"[blue]Installing rclone for {platform_name}...[/blue]")
+
+    try:
+        if platform_name == "macos":
+            install_rclone_macos()
+        elif platform_name == "linux":
+            install_rclone_linux()
+        elif platform_name == "windows":
+            install_rclone_windows()
+            refresh_windows_path()
+        else:
+            raise RcloneInstallError(f"Unsupported platform: {platform_name}")
+
+        # Verify installation
+        if not is_rclone_installed():
+            raise RcloneInstallError("rclone installation completed but command not found in PATH")
+
+        console.print("[green]rclone installation completed successfully[/green]")
+
+    except RcloneInstallError:
+        raise
+    except Exception as e:
+        raise RcloneInstallError(f"Unexpected error during installation: {e}") from e
+
+
+def refresh_windows_path() -> None:
+    """Refresh the Windows PATH environment variable for the current session."""
+    if platform.system().lower() != "windows":
+        return
+
+    # Importing here after performing platform detection. Also note that we have to ignore pylance/pyright
+    # warnings about winreg attributes so that "errors" don't appear on non-Windows platforms.
+    import winreg
+
+    user_key_path = r"Environment"
+    system_key_path = r"System\CurrentControlSet\Control\Session Manager\Environment"
+    new_path = ""
+
+    # Read user PATH
+    try:
+        reg_key = winreg.OpenKey(winreg.HKEY_CURRENT_USER, user_key_path, 0, winreg.KEY_READ)  # type: ignore[reportAttributeAccessIssue]
+        user_path, _ = winreg.QueryValueEx(reg_key, "PATH")  # type: ignore[reportAttributeAccessIssue]
+        winreg.CloseKey(reg_key)  # type: ignore[reportAttributeAccessIssue]
+    except Exception:
+        user_path = ""
+
+    # Read system PATH
+    try:
+        reg_key = winreg.OpenKey(winreg.HKEY_LOCAL_MACHINE, system_key_path, 0, winreg.KEY_READ)  # type: ignore[reportAttributeAccessIssue]
+        system_path, _ = winreg.QueryValueEx(reg_key, "PATH")  # type: ignore[reportAttributeAccessIssue]
+        winreg.CloseKey(reg_key)  # type: ignore[reportAttributeAccessIssue]
+    except Exception:
+        system_path = ""
+
+    # Merge user and system PATHs (system first, then user)
+    if system_path and user_path:
+        new_path = system_path + ";" + user_path
+    elif system_path:
+        new_path = system_path
+    elif user_path:
+        new_path = user_path
+
+    if new_path:
+        os.environ["PATH"] = new_path
+
+
+def get_rclone_version() -> Optional[str]:
+    """Get the installed rclone version."""
+    if not is_rclone_installed():
+        return None
+
+    try:
+        result = run_command(["rclone", "version"], check=False)
+        if result.returncode == 0:
+            # Parse version from output (format: "rclone v1.64.0")
+            lines = result.stdout.strip().split("\n")
+            for line in lines:
+                if line.startswith("rclone v"):
+                    return line.split()[1]
+        return "unknown"
+    except Exception:
+        return "unknown"

src/basic_memory/cli/commands/cloud/upload.py

@@ -0,0 +1,233 @@
+"""WebDAV upload functionality for basic-memory projects."""
+
+import os
+from pathlib import Path
+
+import aiofiles
+import httpx
+
+from basic_memory.ignore_utils import load_gitignore_patterns, should_ignore_path
+from basic_memory.mcp.async_client import get_client
+from basic_memory.mcp.tools.utils import call_put
+
+# Archive file extensions that should be skipped during upload
+ARCHIVE_EXTENSIONS = {".zip", ".tar", ".gz", ".bz2", ".xz", ".7z", ".rar", ".tgz", ".tbz2"}
+
+
+async def upload_path(
+    local_path: Path,
+    project_name: str,
+    verbose: bool = False,
+    use_gitignore: bool = True,
+    dry_run: bool = False,
+) -> bool:
+    """
+    Upload a file or directory to cloud project via WebDAV.
+
+    Args:
+        local_path: Path to local file or directory
+        project_name: Name of cloud project (destination)
+        verbose: Show detailed information about filtering and upload
+        use_gitignore: If False, skip .gitignore patterns (still use .bmignore)
+        dry_run: If True, show what would be uploaded without uploading
+
+    Returns:
+        True if upload succeeded, False otherwise
+    """
+    try:
+        # Resolve path
+        local_path = local_path.resolve()
+
+        # Check if path exists
+        if not local_path.exists():
+            print(f"Error: Path does not exist: {local_path}")
+            return False
+
+        # Get files to upload
+        if local_path.is_file():
+            files_to_upload = [(local_path, local_path.name)]
+            if verbose:
+                print(f"Uploading single file: {local_path.name}")
+        else:
+            files_to_upload = _get_files_to_upload(local_path, verbose, use_gitignore)
+
+        if not files_to_upload:
+            print("No files found to upload")
+            if verbose:
+                print(
+                    "\nTip: Use --verbose to see which files are being filtered, "
+                    "or --no-gitignore to skip .gitignore patterns"
+                )
+            return True
+
+        print(f"Found {len(files_to_upload)} file(s) to upload")
+
+        # Calculate total size
+        total_bytes = sum(file_path.stat().st_size for file_path, _ in files_to_upload)
+        skipped_count = 0
+
+        # If dry run, just show what would be uploaded
+        if dry_run:
+            print("\nFiles that would be uploaded:")
+            for file_path, relative_path in files_to_upload:
+                # Skip archive files
+                if _is_archive_file(file_path):
+                    print(f"  [SKIP] {relative_path} (archive file)")
+                    skipped_count += 1
+                    continue
+
+                size = file_path.stat().st_size
+                if size < 1024:
+                    size_str = f"{size} bytes"
+                elif size < 1024 * 1024:
+                    size_str = f"{size / 1024:.1f} KB"
+                else:
+                    size_str = f"{size / (1024 * 1024):.1f} MB"
+                print(f"  {relative_path} ({size_str})")
+        else:
+            # Upload files using httpx
+            async with get_client() as client:
+                for i, (file_path, relative_path) in enumerate(files_to_upload, 1):
+                    # Skip archive files (zip, tar, gz, etc.)
+                    if _is_archive_file(file_path):
+                        print(
+                            f"Skipping archive file: {relative_path} ({i}/{len(files_to_upload)})"
+                        )
+                        skipped_count += 1
+                        continue
+
+                    # Build remote path: /webdav/{project_name}/{relative_path}
+                    remote_path = f"/webdav/{project_name}/{relative_path}"
+                    print(f"Uploading {relative_path} ({i}/{len(files_to_upload)})")
+
+                    # Get file modification time
+                    file_stat = file_path.stat()
+                    mtime = int(file_stat.st_mtime)
+
+                    # Read file content asynchronously
+                    async with aiofiles.open(file_path, "rb") as f:
+                        content = await f.read()
+
+                    # Upload via HTTP PUT to WebDAV endpoint with mtime header
+                    # Using X-OC-Mtime (ownCloud/Nextcloud standard)
+                    response = await call_put(
+                        client, remote_path, content=content, headers={"X-OC-Mtime": str(mtime)}
+                    )
+                    response.raise_for_status()
+
+        # Format total size based on magnitude
+        if total_bytes < 1024:
+            size_str = f"{total_bytes} bytes"
+        elif total_bytes < 1024 * 1024:
+            size_str = f"{total_bytes / 1024:.1f} KB"
+        else:
+            size_str = f"{total_bytes / (1024 * 1024):.1f} MB"
+
+        uploaded_count = len(files_to_upload) - skipped_count
+        if dry_run:
+            print(f"\nTotal: {uploaded_count} file(s) ({size_str})")
+            if skipped_count > 0:
+                print(f"  Would skip {skipped_count} archive file(s)")
+        else:
+            print(f"✓ Upload complete: {uploaded_count} file(s) ({size_str})")
+            if skipped_count > 0:
+                print(f"  Skipped {skipped_count} archive file(s)")
+
+        return True
+
+    except httpx.HTTPStatusError as e:
+        print(f"Upload failed: HTTP {e.response.status_code} - {e.response.text}")
+        return False
+    except Exception as e:
+        print(f"Upload failed: {e}")
+        return False
+
+
+def _is_archive_file(file_path: Path) -> bool:
+    """
+    Check if a file is an archive file based on its extension.
+
+    Args:
+        file_path: Path to the file to check
+
+    Returns:
+        True if file is an archive, False otherwise
+    """
+    return file_path.suffix.lower() in ARCHIVE_EXTENSIONS
+
+
+def _get_files_to_upload(
+    directory: Path, verbose: bool = False, use_gitignore: bool = True
+) -> list[tuple[Path, str]]:
+    """
+    Get list of files to upload from directory.
+
+    Uses .bmignore and optionally .gitignore patterns for filtering.
+
+    Args:
+        directory: Directory to scan
+        verbose: Show detailed filtering information
+        use_gitignore: If False, skip .gitignore patterns (still use .bmignore)
+
+    Returns:
+        List of (absolute_path, relative_path) tuples
+    """
+    files = []
+    ignored_files = []
+
+    # Load ignore patterns from .bmignore and optionally .gitignore
+    ignore_patterns = load_gitignore_patterns(directory, use_gitignore=use_gitignore)
+
+    if verbose:
+        gitignore_path = directory / ".gitignore"
+        gitignore_exists = gitignore_path.exists() and use_gitignore
+        print(f"\nScanning directory: {directory}")
+        print("Using .bmignore: Yes")
+        print(f"Using .gitignore: {'Yes' if gitignore_exists else 'No'}")
+        print(f"Ignore patterns loaded: {len(ignore_patterns)}")
+        if ignore_patterns and len(ignore_patterns) <= 20:
+            print(f"Patterns: {', '.join(sorted(ignore_patterns))}")
+        print()
+
+    # Walk through directory
+    for root, dirs, filenames in os.walk(directory):
+        root_path = Path(root)
+
+        # Filter directories based on ignore patterns
+        filtered_dirs = []
+        for d in dirs:
+            dir_path = root_path / d
+            if should_ignore_path(dir_path, directory, ignore_patterns):
+                if verbose:
+                    rel_path = dir_path.relative_to(directory)
+                    print(f"  [IGNORED DIR] {rel_path}/")
+            else:
+                filtered_dirs.append(d)
+        dirs[:] = filtered_dirs
+
+        # Process files
+        for filename in filenames:
+            file_path = root_path / filename
+
+            # Calculate relative path for display/remote
+            rel_path = file_path.relative_to(directory)
+            remote_path = str(rel_path).replace("\\", "/")
+
+            # Check if file should be ignored
+            if should_ignore_path(file_path, directory, ignore_patterns):
+                ignored_files.append(remote_path)
+                if verbose:
+                    print(f"  [IGNORED] {remote_path}")
+                continue
+
+            if verbose:
+                print(f"  [INCLUDE] {remote_path}")
+
+            files.append((file_path, remote_path))
+
+    if verbose:
+        print("\nSummary:")
+        print(f"  Files to upload: {len(files)}")
+        print(f"  Files ignored: {len(ignored_files)}")
+
+    return files

src/basic_memory/cli/commands/cloud/upload_command.py

@@ -0,0 +1,124 @@
+"""Upload CLI commands for basic-memory projects."""
+
+import asyncio
+from pathlib import Path
+
+import typer
+from rich.console import Console
+
+from basic_memory.cli.app import cloud_app
+from basic_memory.cli.commands.cloud.cloud_utils import (
+    create_cloud_project,
+    project_exists,
+    sync_project,
+)
+from basic_memory.cli.commands.cloud.upload import upload_path
+
+console = Console()
+
+
+@cloud_app.command("upload")
+def upload(
+    path: Path = typer.Argument(
+        ...,
+        help="Path to local file or directory to upload",
+        exists=True,
+        readable=True,
+        resolve_path=True,
+    ),
+    project: str = typer.Option(
+        ...,
+        "--project",
+        "-p",
+        help="Cloud project name (destination)",
+    ),
+    create_project: bool = typer.Option(
+        False,
+        "--create-project",
+        "-c",
+        help="Create project if it doesn't exist",
+    ),
+    sync: bool = typer.Option(
+        True,
+        "--sync/--no-sync",
+        help="Sync project after upload (default: true)",
+    ),
+    verbose: bool = typer.Option(
+        False,
+        "--verbose",
+        "-v",
+        help="Show detailed information about file filtering and upload",
+    ),
+    no_gitignore: bool = typer.Option(
+        False,
+        "--no-gitignore",
+        help="Skip .gitignore patterns (still respects .bmignore)",
+    ),
+    dry_run: bool = typer.Option(
+        False,
+        "--dry-run",
+        help="Show what would be uploaded without actually uploading",
+    ),
+) -> None:
+    """Upload local files or directories to cloud project via WebDAV.
+
+    Examples:
+      bm cloud upload ~/my-notes --project research
+      bm cloud upload notes.md --project research --create-project
+      bm cloud upload ~/docs --project work --no-sync
+      bm cloud upload ./history --project proto --verbose
+      bm cloud upload ./notes --project work --no-gitignore
+      bm cloud upload ./files --project test --dry-run
+    """
+
+    async def _upload():
+        # Check if project exists
+        if not await project_exists(project):
+            if create_project:
+                console.print(f"[blue]Creating cloud project '{project}'...[/blue]")
+                try:
+                    await create_cloud_project(project)
+                    console.print(f"[green]Created project '{project}'[/green]")
+                except Exception as e:
+                    console.print(f"[red]Failed to create project: {e}[/red]")
+                    raise typer.Exit(1)
+            else:
+                console.print(
+                    f"[red]Project '{project}' does not exist.[/red]\n"
+                    f"[yellow]Options:[/yellow]\n"
+                    f"  1. Create it first: bm project add {project}\n"
+                    f"  2. Use --create-project flag to create automatically"
+                )
+                raise typer.Exit(1)
+
+        # Perform upload (or dry run)
+        if dry_run:
+            console.print(
+                f"[yellow]DRY RUN: Showing what would be uploaded to '{project}'[/yellow]"
+            )
+        else:
+            console.print(f"[blue]Uploading {path} to project '{project}'...[/blue]")
+
+        success = await upload_path(
+            path, project, verbose=verbose, use_gitignore=not no_gitignore, dry_run=dry_run
+        )
+        if not success:
+            console.print("[red]Upload failed[/red]")
+            raise typer.Exit(1)
+
+        if dry_run:
+            console.print("[yellow]DRY RUN complete - no files were uploaded[/yellow]")
+        else:
+            console.print(f"[green]Successfully uploaded to '{project}'[/green]")
+
+        # Sync project if requested (skip on dry run)
+        # Force full scan after bisync to ensure database is up-to-date with synced files
+        if sync and not dry_run:
+            console.print(f"[blue]Syncing project '{project}'...[/blue]")
+            try:
+                await sync_project(project, force_full=True)
+            except Exception as e:
+                console.print(f"[yellow]Warning: Sync failed: {e}[/yellow]")
+                console.print("[dim]Files uploaded but may not be indexed yet[/dim]")
+
+    asyncio.run(_upload())

src/basic_memory/cli/commands/command_utils.py

@@ -0,0 +1,51 @@
+"""utility functions for commands"""
+
+from typing import Optional
+
+from mcp.server.fastmcp.exceptions import ToolError
+import typer
+
+from rich.console import Console
+
+from basic_memory.mcp.async_client import get_client
+
+from basic_memory.mcp.tools.utils import call_post, call_get
+from basic_memory.mcp.project_context import get_active_project
+from basic_memory.schemas import ProjectInfoResponse
+
+console = Console()
+
+
+async def run_sync(project: Optional[str] = None, force_full: bool = False):
+    """Run sync operation via API endpoint.
+
+    Args:
+        project: Optional project name
+        force_full: If True, force a full scan bypassing watermark optimization
+    """
+
+    try:
+        async with get_client() as client:
+            project_item = await get_active_project(client, project, None)
+            url = f"{project_item.project_url}/project/sync"
+            if force_full:
+                url += "?force_full=true"
+            response = await call_post(client, url)
+            data = response.json()
+            console.print(f"[green]{data['message']}[/green]")
+    except (ToolError, ValueError) as e:
+        console.print(f"[red]Sync failed: {e}[/red]")
+        raise typer.Exit(1)
+
+
+async def get_project_info(project: str):
+    """Get project information via API endpoint."""
+
+    try:
+        async with get_client() as client:
+            project_item = await get_active_project(client, project, None)
+            response = await call_get(client, f"{project_item.project_url}/project/info")
+            return ProjectInfoResponse.model_validate(response.json())
+    except (ToolError, ValueError) as e:
+        console.print(f"[red]Sync failed: {e}[/red]")
+        raise typer.Exit(1)

src/basic_memory/cli/commands/db.py

@@ -37,8 +37,8 @@ def reset(
         logger.info("Database reset complete")
 
         if reindex:
-            # Import and run sync
-            from basic_memory.cli.commands.sync import sync
+            # Run database sync directly
+            from basic_memory.cli.commands.command_utils import run_sync
 
             logger.info("Rebuilding search index from filesystem...")
-            sync(watch=False)  # pyright: ignore
+            asyncio.run(run_sync(project=None))

src/basic_memory/cli/commands/import_memory_json.py

@@ -39,8 +39,6 @@ def memory_json(
     1. Read entities and relations from the JSON file
     2. Create markdown files for each entity
     3. Include outgoing relations in each entity's markdown
-
-    After importing, run 'basic-memory sync' to index the new files.
     """
 
     if not json_path.exists():
@@ -82,8 +80,6 @@ def memory_json(
             )
         )
 
-        console.print("\nRun 'basic-memory sync' to index the new files.")
-
     except Exception as e:
         logger.error("Import failed")
         typer.echo(f"Error during import: {e}", err=True)

src/basic_memory/cli/commands/mcp.py

@@ -1,7 +1,9 @@
 """MCP server command with streamable HTTP transport."""
 
 import asyncio
+import os
 import typer
+from typing import Optional
 
 from basic_memory.cli.app import app
 from basic_memory.config import ConfigManager
@@ -15,63 +17,78 @@ import basic_memory.mcp.tools  # noqa: F401  # pragma: no cover
 # Import prompts to register them
 import basic_memory.mcp.prompts  # noqa: F401  # pragma: no cover
 from loguru import logger
+import threading
+from basic_memory.services.initialization import initialize_file_sync
 
+config = ConfigManager().config
 
-@app.command()
-def mcp(
-    transport: str = typer.Option("stdio", help="Transport type: stdio, streamable-http, or sse"),
-    host: str = typer.Option(
-        "0.0.0.0", help="Host for HTTP transports (use 0.0.0.0 to allow external connections)"
-    ),
-    port: int = typer.Option(8000, help="Port for HTTP transports"),
-    path: str = typer.Option("/mcp", help="Path prefix for streamable-http transport"),
-):  # pragma: no cover
-    """Run the MCP server with configurable transport options.
+if not config.cloud_mode_enabled:
 
-    This command starts an MCP server using one of three transport options:
+    @app.command()
+    def mcp(
+        transport: str = typer.Option(
+            "stdio", help="Transport type: stdio, streamable-http, or sse"
+        ),
+        host: str = typer.Option(
+            "0.0.0.0", help="Host for HTTP transports (use 0.0.0.0 to allow external connections)"
+        ),
+        port: int = typer.Option(8000, help="Port for HTTP transports"),
+        path: str = typer.Option("/mcp", help="Path prefix for streamable-http transport"),
+        project: Optional[str] = typer.Option(None, help="Restrict MCP server to single project"),
+    ):  # pragma: no cover
+        """Run the MCP server with configurable transport options.
 
-    - stdio: Standard I/O (good for local usage)
-    - streamable-http: Recommended for web deployments (default)
-    - sse: Server-Sent Events (for compatibility with existing clients)
-    """
+        This command starts an MCP server using one of three transport options:
 
-    from basic_memory.services.initialization import initialize_file_sync
+        - stdio: Standard I/O (good for local usage)
+        - streamable-http: Recommended for web deployments (default)
+        - sse: Server-Sent Events (for compatibility with existing clients)
+        """
 
-    # Use unified thread-based sync approach for both transports
-    import threading
+        # Validate and set project constraint if specified
+        if project:
+            config_manager = ConfigManager()
+            project_name, _ = config_manager.get_project(project)
+            if not project_name:
+                typer.echo(f"No project found named: {project}", err=True)
+                raise typer.Exit(1)
 
-    app_config = ConfigManager().config
+            # Set env var with validated project name
+            os.environ["BASIC_MEMORY_MCP_PROJECT"] = project_name
+            logger.info(f"MCP server constrained to project: {project_name}")
 
-    def run_file_sync():
-        """Run file sync in a separate thread with its own event loop."""
-        loop = asyncio.new_event_loop()
-        asyncio.set_event_loop(loop)
-        try:
-            loop.run_until_complete(initialize_file_sync(app_config))
-        except Exception as e:
-            logger.error(f"File sync error: {e}", err=True)
-        finally:
-            loop.close()
+        app_config = ConfigManager().config
 
-    logger.info(f"Sync changes enabled: {app_config.sync_changes}")
-    if app_config.sync_changes:
-        # Start the sync thread
-        sync_thread = threading.Thread(target=run_file_sync, daemon=True)
-        sync_thread.start()
-        logger.info("Started file sync in background")
+        def run_file_sync():
+            """Run file sync in a separate thread with its own event loop."""
+            loop = asyncio.new_event_loop()
+            asyncio.set_event_loop(loop)
+            try:
+                loop.run_until_complete(initialize_file_sync(app_config))
+            except Exception as e:
+                logger.error(f"File sync error: {e}", err=True)
+            finally:
+                loop.close()
 
-    # Now run the MCP server (blocks)
-    logger.info(f"Starting MCP server with {transport.upper()} transport")
+        logger.info(f"Sync changes enabled: {app_config.sync_changes}")
+        if app_config.sync_changes:
+            # Start the sync thread
+            sync_thread = threading.Thread(target=run_file_sync, daemon=True)
+            sync_thread.start()
+            logger.info("Started file sync in background")
 
-    if transport == "stdio":
-        mcp_server.run(
-            transport=transport,
-        )
-    elif transport == "streamable-http" or transport == "sse":
-        mcp_server.run(
-            transport=transport,
-            host=host,
-            port=port,
-            path=path,
-            log_level="INFO",
-        )
+        # Now run the MCP server (blocks)
+        logger.info(f"Starting MCP server with {transport.upper()} transport")
+
+        if transport == "stdio":
+            mcp_server.run(
+                transport=transport,
+            )
+        elif transport == "streamable-http" or transport == "sse":
+            mcp_server.run(
+                transport=transport,
+                host=host,
+                port=port,
+                path=path,
+                log_level="INFO",
+            )

src/basic_memory/cli/commands/project.py

@@ -9,23 +9,33 @@ from rich.console import Console
 from rich.table import Table
 
 from basic_memory.cli.app import app
-from basic_memory.mcp.project_session import session
-from basic_memory.mcp.resources.project_info import project_info
+from basic_memory.cli.commands.command_utils import get_project_info
+from basic_memory.config import ConfigManager
 import json
 from datetime import datetime
 
 from rich.panel import Panel
-from rich.tree import Tree
-from basic_memory.mcp.async_client import client
+from basic_memory.mcp.async_client import get_client
 from basic_memory.mcp.tools.utils import call_get
 from basic_memory.schemas.project_info import ProjectList
 from basic_memory.mcp.tools.utils import call_post
 from basic_memory.schemas.project_info import ProjectStatusResponse
 from basic_memory.mcp.tools.utils import call_delete
 from basic_memory.mcp.tools.utils import call_put
-from basic_memory.utils import generate_permalink
+from basic_memory.utils import generate_permalink, normalize_project_path
 from basic_memory.mcp.tools.utils import call_patch
 
+# Import rclone commands for project sync
+from basic_memory.cli.commands.cloud.rclone_commands import (
+    SyncProject,
+    RcloneError,
+    project_sync,
+    project_bisync,
+    project_check,
+    project_ls,
+)
+from basic_memory.cli.commands.cloud.bisync_commands import get_mount_info
+
 console = Console()
 
 # Create a project subcommand
@@ -43,22 +53,50 @@ def format_path(path: str) -> str:
 
 @project_app.command("list")
 def list_projects() -> None:
-    """List all configured projects."""
-    # Use API to list projects
+    """List all Basic Memory projects."""
+
+    async def _list_projects():
+        async with get_client() as client:
+            response = await call_get(client, "/projects/projects")
+            return ProjectList.model_validate(response.json())
+
     try:
-        response = asyncio.run(call_get(client, "/projects/projects"))
-        result = ProjectList.model_validate(response.json())
+        result = asyncio.run(_list_projects())
+        config = ConfigManager().config
 
         table = Table(title="Basic Memory Projects")
         table.add_column("Name", style="cyan")
         table.add_column("Path", style="green")
-        table.add_column("Default", style="yellow")
-        table.add_column("Active", style="magenta")
+
+        # Add Local Path column if in cloud mode
+        if config.cloud_mode_enabled:
+            table.add_column("Local Path", style="yellow", no_wrap=True, overflow="fold")
+
+        # Show Default column in local mode or if default_project_mode is enabled in cloud mode
+        show_default_column = not config.cloud_mode_enabled or config.default_project_mode
+        if show_default_column:
+            table.add_column("Default", style="magenta")
 
         for project in result.projects:
-            is_default = "✓" if project.is_default else ""
-            is_active = "✓" if session.get_current_project() == project.name else ""
-            table.add_row(project.name, format_path(project.path), is_default, is_active)
+            is_default = "[X]" if project.is_default else ""
+            normalized_path = normalize_project_path(project.path)
+
+            # Build row based on mode
+            row = [project.name, format_path(normalized_path)]
+
+            # Add local path if in cloud mode
+            if config.cloud_mode_enabled:
+                local_path = ""
+                if project.name in config.cloud_projects:
+                    local_path = config.cloud_projects[project.name].local_path or ""
+                    local_path = format_path(local_path)
+                row.append(local_path)
+
+            # Add default indicator if showing default column
+            if show_default_column:
+                row.append(is_default)
+
+            table.add_row(*row)
 
         console.print(table)
     except Exception as e:
@@ -69,79 +107,259 @@ def list_projects() -> None:
 @project_app.command("add")
 def add_project(
     name: str = typer.Argument(..., help="Name of the project"),
-    path: str = typer.Argument(..., help="Path to the project directory"),
+    path: str = typer.Argument(
+        None, help="Path to the project directory (required for local mode)"
+    ),
+    local_path: str = typer.Option(
+        None, "--local-path", help="Local sync path for cloud mode (optional)"
+    ),
     set_default: bool = typer.Option(False, "--default", help="Set as default project"),
 ) -> None:
-    """Add a new project."""
-    # Resolve to absolute path
-    resolved_path = Path(os.path.abspath(os.path.expanduser(path))).as_posix()
+    """Add a new project.
+
+    Cloud mode examples:\n
+        bm project add research                           # No local sync\n
+        bm project add research --local-path ~/docs       # With local sync\n
+
+    Local mode example:\n
+        bm project add research ~/Documents/research
+    """
+    config = ConfigManager().config
+
+    # Resolve local sync path early (needed for both cloud and local mode)
+    local_sync_path: str | None = None
+    if local_path:
+        local_sync_path = Path(os.path.abspath(os.path.expanduser(local_path))).as_posix()
+
+    if config.cloud_mode_enabled:
+        # Cloud mode: path auto-generated from name, local sync is optional
+
+        async def _add_project():
+            async with get_client() as client:
+                data = {
+                    "name": name,
+                    "path": generate_permalink(name),
+                    "local_sync_path": local_sync_path,
+                    "set_default": set_default,
+                }
+                response = await call_post(client, "/projects/projects", json=data)
+                return ProjectStatusResponse.model_validate(response.json())
+    else:
+        # Local mode: path is required
+        if path is None:
+            console.print("[red]Error: path argument is required in local mode[/red]")
+            raise typer.Exit(1)
+
+        # Resolve to absolute path
+        resolved_path = Path(os.path.abspath(os.path.expanduser(path))).as_posix()
+
+        async def _add_project():
+            async with get_client() as client:
+                data = {"name": name, "path": resolved_path, "set_default": set_default}
+                response = await call_post(client, "/projects/projects", json=data)
+                return ProjectStatusResponse.model_validate(response.json())
 
     try:
-        data = {"name": name, "path": resolved_path, "set_default": set_default}
-
-        response = asyncio.run(call_post(client, "/projects/projects", json=data))
-        result = ProjectStatusResponse.model_validate(response.json())
-
+        result = asyncio.run(_add_project())
         console.print(f"[green]{result.message}[/green]")
+
+        # Save local sync path to config if in cloud mode
+        if config.cloud_mode_enabled and local_sync_path:
+            from basic_memory.config import CloudProjectConfig
+
+            # Create local directory if it doesn't exist
+            local_dir = Path(local_sync_path)
+            local_dir.mkdir(parents=True, exist_ok=True)
+
+            # Update config with sync path
+            config.cloud_projects[name] = CloudProjectConfig(
+                local_path=local_sync_path,
+                last_sync=None,
+                bisync_initialized=False,
+            )
+            ConfigManager().save_config(config)
+
+            console.print(f"\n[green]Local sync path configured: {local_sync_path}[/green]")
+            console.print("\nNext steps:")
+            console.print(f"  1. Preview: bm project bisync --name {name} --resync --dry-run")
+            console.print(f"  2. Sync: bm project bisync --name {name} --resync")
     except Exception as e:
         console.print(f"[red]Error adding project: {str(e)}[/red]")
         raise typer.Exit(1)
 
-    # Display usage hint
-    console.print("\nTo use this project:")
-    console.print(f"  basic-memory --project={name} <command>")
-    console.print("  # or")
-    console.print(f"  basic-memory project default {name}")
+
+@project_app.command("sync-setup")
+def setup_project_sync(
+    name: str = typer.Argument(..., help="Project name"),
+    local_path: str = typer.Argument(..., help="Local sync directory"),
+) -> None:
+    """Configure local sync for an existing cloud project.
+
+    Example:
+      bm project sync-setup research ~/Documents/research
+    """
+    config_manager = ConfigManager()
+    config = config_manager.config
+
+    if not config.cloud_mode_enabled:
+        console.print("[red]Error: sync-setup only available in cloud mode[/red]")
+        raise typer.Exit(1)
+
+    async def _verify_project_exists():
+        """Verify the project exists on cloud by listing all projects."""
+        async with get_client() as client:
+            response = await call_get(client, "/projects/projects")
+            project_list = response.json()
+            project_names = [p["name"] for p in project_list["projects"]]
+            if name not in project_names:
+                raise ValueError(f"Project '{name}' not found on cloud")
+            return True
+
+    try:
+        # Verify project exists on cloud
+        asyncio.run(_verify_project_exists())
+
+        # Resolve and create local path
+        resolved_path = Path(os.path.abspath(os.path.expanduser(local_path)))
+        resolved_path.mkdir(parents=True, exist_ok=True)
+
+        # Update local config with sync path
+        from basic_memory.config import CloudProjectConfig
+
+        config.cloud_projects[name] = CloudProjectConfig(
+            local_path=resolved_path.as_posix(),
+            last_sync=None,
+            bisync_initialized=False,
+        )
+        config_manager.save_config(config)
+
+        console.print(f"[green]Sync configured for project '{name}'[/green]")
+        console.print(f"\nLocal sync path: {resolved_path}")
+        console.print("\nNext steps:")
+        console.print(f"  1. Preview: bm project bisync --name {name} --resync --dry-run")
+        console.print(f"  2. Sync: bm project bisync --name {name} --resync")
+    except Exception as e:
+        console.print(f"[red]Error configuring sync: {str(e)}[/red]")
+        raise typer.Exit(1)
 
 
 @project_app.command("remove")
 def remove_project(
     name: str = typer.Argument(..., help="Name of the project to remove"),
+    delete_notes: bool = typer.Option(
+        False, "--delete-notes", help="Delete project files from disk"
+    ),
 ) -> None:
-    """Remove a project from configuration."""
-    try:
-        project_permalink = generate_permalink(name)
-        response = asyncio.run(call_delete(client, f"/projects/{project_permalink}"))
-        result = ProjectStatusResponse.model_validate(response.json())
+    """Remove a project."""
 
+    async def _remove_project():
+        async with get_client() as client:
+            project_permalink = generate_permalink(name)
+            response = await call_delete(
+                client, f"/projects/{project_permalink}?delete_notes={delete_notes}"
+            )
+            return ProjectStatusResponse.model_validate(response.json())
+
+    try:
+        # Get config to check for local sync path and bisync state
+        config = ConfigManager().config
+        local_path = None
+        has_bisync_state = False
+
+        if config.cloud_mode_enabled and name in config.cloud_projects:
+            local_path = config.cloud_projects[name].local_path
+
+            # Check for bisync state
+            from basic_memory.cli.commands.cloud.rclone_commands import get_project_bisync_state
+
+            bisync_state_path = get_project_bisync_state(name)
+            has_bisync_state = bisync_state_path.exists()
+
+        # Remove project from cloud/API
+        result = asyncio.run(_remove_project())
         console.print(f"[green]{result.message}[/green]")
+
+        # Clean up local sync directory if it exists and delete_notes is True
+        if delete_notes and local_path:
+            local_dir = Path(local_path)
+            if local_dir.exists():
+                import shutil
+
+                shutil.rmtree(local_dir)
+                console.print(f"[green]Removed local sync directory: {local_path}[/green]")
+
+        # Clean up bisync state if it exists
+        if has_bisync_state:
+            from basic_memory.cli.commands.cloud.rclone_commands import get_project_bisync_state
+            import shutil
+
+            bisync_state_path = get_project_bisync_state(name)
+            if bisync_state_path.exists():
+                shutil.rmtree(bisync_state_path)
+                console.print("[green]Removed bisync state[/green]")
+
+        # Clean up cloud_projects config entry
+        if config.cloud_mode_enabled and name in config.cloud_projects:
+            del config.cloud_projects[name]
+            ConfigManager().save_config(config)
+
+        # Show informative message if files were not deleted
+        if not delete_notes:
+            if local_path:
+                console.print(f"[yellow]Note: Local files remain at {local_path}[/yellow]")
+
     except Exception as e:
         console.print(f"[red]Error removing project: {str(e)}[/red]")
         raise typer.Exit(1)
 
-    # Show this message regardless of method used
-    console.print("[yellow]Note: The project files have not been deleted from disk.[/yellow]")
-
 
 @project_app.command("default")
 def set_default_project(
-    name: str = typer.Argument(..., help="Name of the project to set as default"),
+    name: str = typer.Argument(..., help="Name of the project to set as CLI default"),
 ) -> None:
-    """Set the default project and activate it for the current session."""
-    try:
-        project_permalink = generate_permalink(name)
-        response = asyncio.run(call_put(client, f"/projects/{project_permalink}/default"))
-        result = ProjectStatusResponse.model_validate(response.json())
+    """Set the default project when 'config.default_project_mode' is set.
 
+    Note: This command is only available in local mode.
+    """
+    config = ConfigManager().config
+
+    if config.cloud_mode_enabled:
+        console.print("[red]Error: 'default' command is not available in cloud mode[/red]")
+        raise typer.Exit(1)
+
+    async def _set_default():
+        async with get_client() as client:
+            project_permalink = generate_permalink(name)
+            response = await call_put(client, f"/projects/{project_permalink}/default")
+            return ProjectStatusResponse.model_validate(response.json())
+
+    try:
+        result = asyncio.run(_set_default())
         console.print(f"[green]{result.message}[/green]")
     except Exception as e:
         console.print(f"[red]Error setting default project: {str(e)}[/red]")
         raise typer.Exit(1)
 
-    # The API call above should have updated both config and MCP session
-    # No need for manual reload - the project service handles this automatically
-    console.print("[green]Project activated for current session[/green]")
-
 
 @project_app.command("sync-config")
 def synchronize_projects() -> None:
-    """Synchronize project config between configuration file and database."""
-    # Call the API to synchronize projects
+    """Synchronize project config between configuration file and database.
+
+    Note: This command is only available in local mode.
+    """
+    config = ConfigManager().config
+
+    if config.cloud_mode_enabled:
+        console.print("[red]Error: 'sync-config' command is not available in cloud mode[/red]")
+        raise typer.Exit(1)
+
+    async def _sync_config():
+        async with get_client() as client:
+            response = await call_post(client, "/projects/config/sync")
+            return ProjectStatusResponse.model_validate(response.json())
 
     try:
-        response = asyncio.run(call_post(client, "/projects/sync"))
-        result = ProjectStatusResponse.model_validate(response.json())
-
+        result = asyncio.run(_sync_config())
         console.print(f"[green]{result.message}[/green]")
     except Exception as e:  # pragma: no cover
         console.print(f"[red]Error synchronizing projects: {str(e)}[/red]")
@@ -153,20 +371,30 @@ def move_project(
     name: str = typer.Argument(..., help="Name of the project to move"),
     new_path: str = typer.Argument(..., help="New absolute path for the project"),
 ) -> None:
-    """Move a project to a new location."""
+    """Move a project to a new location.
+
+    Note: This command is only available in local mode.
+    """
+    config = ConfigManager().config
+
+    if config.cloud_mode_enabled:
+        console.print("[red]Error: 'move' command is not available in cloud mode[/red]")
+        raise typer.Exit(1)
+
     # Resolve to absolute path
     resolved_path = Path(os.path.abspath(os.path.expanduser(new_path))).as_posix()
 
+    async def _move_project():
+        async with get_client() as client:
+            data = {"path": resolved_path}
+            project_permalink = generate_permalink(name)
+
+            # TODO fix route to use ProjectPathDep
+            response = await call_patch(client, f"/{name}/project/{project_permalink}", json=data)
+            return ProjectStatusResponse.model_validate(response.json())
+
     try:
-        data = {"path": resolved_path}
-
-        project_permalink = generate_permalink(name)
-        current_project = session.get_current_project()
-        response = asyncio.run(
-            call_patch(client, f"/{current_project}/project/{project_permalink}", json=data)
-        )
-        result = ProjectStatusResponse.model_validate(response.json())
-
+        result = asyncio.run(_move_project())
         console.print(f"[green]{result.message}[/green]")
 
         # Show important file movement reminder
@@ -177,7 +405,7 @@ def move_project(
                 "[yellow]You must manually move your project files from the old location to:[/yellow]\n"
                 f"[cyan]{resolved_path}[/cyan]\n\n"
                 "[dim]Basic Memory has only updated the configuration - your files remain in their original location.[/dim]",
-                title="⚠️  Manual File Movement Required",
+                title="Manual File Movement Required",
                 border_style="yellow",
                 expand=False,
             )
@@ -188,35 +416,381 @@ def move_project(
         raise typer.Exit(1)
 
 
+@project_app.command("sync")
+def sync_project_command(
+    name: str = typer.Option(..., "--name", help="Project name to sync"),
+    dry_run: bool = typer.Option(False, "--dry-run", help="Preview changes without syncing"),
+    verbose: bool = typer.Option(False, "--verbose", "-v", help="Show detailed output"),
+) -> None:
+    """One-way sync: local -> cloud (make cloud identical to local).
+
+    Example:
+      bm project sync --name research
+      bm project sync --name research --dry-run
+    """
+    config = ConfigManager().config
+    if not config.cloud_mode_enabled:
+        console.print("[red]Error: sync only available in cloud mode[/red]")
+        raise typer.Exit(1)
+
+    try:
+        # Get tenant info for bucket name
+        tenant_info = asyncio.run(get_mount_info())
+        bucket_name = tenant_info.bucket_name
+
+        # Get project info
+        async def _get_project():
+            async with get_client() as client:
+                response = await call_get(client, "/projects/projects")
+                projects_list = ProjectList.model_validate(response.json())
+                for proj in projects_list.projects:
+                    if generate_permalink(proj.name) == generate_permalink(name):
+                        return proj
+                return None
+
+        project_data = asyncio.run(_get_project())
+        if not project_data:
+            console.print(f"[red]Error: Project '{name}' not found[/red]")
+            raise typer.Exit(1)
+
+        # Get local_sync_path from cloud_projects config
+        local_sync_path = None
+        if name in config.cloud_projects:
+            local_sync_path = config.cloud_projects[name].local_path
+
+        if not local_sync_path:
+            console.print(f"[red]Error: Project '{name}' has no local_sync_path configured[/red]")
+            console.print(f"\nConfigure sync with: bm project sync-setup {name} ~/path/to/local")
+            raise typer.Exit(1)
+
+        # Create SyncProject
+        sync_project = SyncProject(
+            name=project_data.name,
+            path=normalize_project_path(project_data.path),
+            local_sync_path=local_sync_path,
+        )
+
+        # Run sync
+        console.print(f"[blue]Syncing {name} (local -> cloud)...[/blue]")
+        success = project_sync(sync_project, bucket_name, dry_run=dry_run, verbose=verbose)
+
+        if success:
+            console.print(f"[green]{name} synced successfully[/green]")
+
+            # Trigger database sync if not a dry run
+            if not dry_run:
+
+                async def _trigger_db_sync():
+                    async with get_client() as client:
+                        permalink = generate_permalink(name)
+                        response = await call_post(
+                            client, f"/{permalink}/project/sync?force_full=true", json={}
+                        )
+                        return response.json()
+
+                try:
+                    result = asyncio.run(_trigger_db_sync())
+                    console.print(f"[dim]Database sync initiated: {result.get('message')}[/dim]")
+                except Exception as e:
+                    console.print(f"[yellow]Warning: Could not trigger database sync: {e}[/yellow]")
+        else:
+            console.print(f"[red]{name} sync failed[/red]")
+            raise typer.Exit(1)
+
+    except RcloneError as e:
+        console.print(f"[red]Sync error: {e}[/red]")
+        raise typer.Exit(1)
+    except Exception as e:
+        console.print(f"[red]Error: {e}[/red]")
+        raise typer.Exit(1)
+
+
+@project_app.command("bisync")
+def bisync_project_command(
+    name: str = typer.Option(..., "--name", help="Project name to bisync"),
+    dry_run: bool = typer.Option(False, "--dry-run", help="Preview changes without syncing"),
+    resync: bool = typer.Option(False, "--resync", help="Force new baseline"),
+    verbose: bool = typer.Option(False, "--verbose", "-v", help="Show detailed output"),
+) -> None:
+    """Two-way sync: local <-> cloud (bidirectional sync).
+
+    Examples:
+      bm project bisync --name research --resync  # First time
+      bm project bisync --name research           # Subsequent syncs
+      bm project bisync --name research --dry-run # Preview changes
+    """
+    config = ConfigManager().config
+    if not config.cloud_mode_enabled:
+        console.print("[red]Error: bisync only available in cloud mode[/red]")
+        raise typer.Exit(1)
+
+    try:
+        # Get tenant info for bucket name
+        tenant_info = asyncio.run(get_mount_info())
+        bucket_name = tenant_info.bucket_name
+
+        # Get project info
+        async def _get_project():
+            async with get_client() as client:
+                response = await call_get(client, "/projects/projects")
+                projects_list = ProjectList.model_validate(response.json())
+                for proj in projects_list.projects:
+                    if generate_permalink(proj.name) == generate_permalink(name):
+                        return proj
+                return None
+
+        project_data = asyncio.run(_get_project())
+        if not project_data:
+            console.print(f"[red]Error: Project '{name}' not found[/red]")
+            raise typer.Exit(1)
+
+        # Get local_sync_path from cloud_projects config
+        local_sync_path = None
+        if name in config.cloud_projects:
+            local_sync_path = config.cloud_projects[name].local_path
+
+        if not local_sync_path:
+            console.print(f"[red]Error: Project '{name}' has no local_sync_path configured[/red]")
+            console.print(f"\nConfigure sync with: bm project sync-setup {name} ~/path/to/local")
+            raise typer.Exit(1)
+
+        # Create SyncProject
+        sync_project = SyncProject(
+            name=project_data.name,
+            path=normalize_project_path(project_data.path),
+            local_sync_path=local_sync_path,
+        )
+
+        # Run bisync
+        console.print(f"[blue]Bisync {name} (local <-> cloud)...[/blue]")
+        success = project_bisync(
+            sync_project, bucket_name, dry_run=dry_run, resync=resync, verbose=verbose
+        )
+
+        if success:
+            console.print(f"[green]{name} bisync completed successfully[/green]")
+
+            # Update config
+            config.cloud_projects[name].last_sync = datetime.now()
+            config.cloud_projects[name].bisync_initialized = True
+            ConfigManager().save_config(config)
+
+            # Trigger database sync if not a dry run
+            if not dry_run:
+
+                async def _trigger_db_sync():
+                    async with get_client() as client:
+                        permalink = generate_permalink(name)
+                        response = await call_post(
+                            client, f"/{permalink}/project/sync?force_full=true", json={}
+                        )
+                        return response.json()
+
+                try:
+                    result = asyncio.run(_trigger_db_sync())
+                    console.print(f"[dim]Database sync initiated: {result.get('message')}[/dim]")
+                except Exception as e:
+                    console.print(f"[yellow]Warning: Could not trigger database sync: {e}[/yellow]")
+        else:
+            console.print(f"[red]{name} bisync failed[/red]")
+            raise typer.Exit(1)
+
+    except RcloneError as e:
+        console.print(f"[red]Bisync error: {e}[/red]")
+        raise typer.Exit(1)
+    except Exception as e:
+        console.print(f"[red]Error: {e}[/red]")
+        raise typer.Exit(1)
+
+
+@project_app.command("check")
+def check_project_command(
+    name: str = typer.Option(..., "--name", help="Project name to check"),
+    one_way: bool = typer.Option(False, "--one-way", help="Check one direction only (faster)"),
+) -> None:
+    """Verify file integrity between local and cloud.
+
+    Example:
+      bm project check --name research
+    """
+    config = ConfigManager().config
+    if not config.cloud_mode_enabled:
+        console.print("[red]Error: check only available in cloud mode[/red]")
+        raise typer.Exit(1)
+
+    try:
+        # Get tenant info for bucket name
+        tenant_info = asyncio.run(get_mount_info())
+        bucket_name = tenant_info.bucket_name
+
+        # Get project info
+        async def _get_project():
+            async with get_client() as client:
+                response = await call_get(client, "/projects/projects")
+                projects_list = ProjectList.model_validate(response.json())
+                for proj in projects_list.projects:
+                    if generate_permalink(proj.name) == generate_permalink(name):
+                        return proj
+                return None
+
+        project_data = asyncio.run(_get_project())
+        if not project_data:
+            console.print(f"[red]Error: Project '{name}' not found[/red]")
+            raise typer.Exit(1)
+
+        # Get local_sync_path from cloud_projects config
+        local_sync_path = None
+        if name in config.cloud_projects:
+            local_sync_path = config.cloud_projects[name].local_path
+
+        if not local_sync_path:
+            console.print(f"[red]Error: Project '{name}' has no local_sync_path configured[/red]")
+            console.print(f"\nConfigure sync with: bm project sync-setup {name} ~/path/to/local")
+            raise typer.Exit(1)
+
+        # Create SyncProject
+        sync_project = SyncProject(
+            name=project_data.name,
+            path=normalize_project_path(project_data.path),
+            local_sync_path=local_sync_path,
+        )
+
+        # Run check
+        console.print(f"[blue]Checking {name} integrity...[/blue]")
+        match = project_check(sync_project, bucket_name, one_way=one_way)
+
+        if match:
+            console.print(f"[green]{name} files match[/green]")
+        else:
+            console.print(f"[yellow]!{name} has differences[/yellow]")
+
+    except RcloneError as e:
+        console.print(f"[red]Check error: {e}[/red]")
+        raise typer.Exit(1)
+    except Exception as e:
+        console.print(f"[red]Error: {e}[/red]")
+        raise typer.Exit(1)
+
+
+@project_app.command("bisync-reset")
+def bisync_reset(
+    name: str = typer.Argument(..., help="Project name to reset bisync state for"),
+) -> None:
+    """Clear bisync state for a project.
+
+    This removes the bisync metadata files, forcing a fresh --resync on next bisync.
+    Useful when bisync gets into an inconsistent state or when remote path changes.
+    """
+    from basic_memory.cli.commands.cloud.rclone_commands import get_project_bisync_state
+    import shutil
+
+    try:
+        state_path = get_project_bisync_state(name)
+
+        if not state_path.exists():
+            console.print(f"[yellow]No bisync state found for project '{name}'[/yellow]")
+            return
+
+        # Remove the entire state directory
+        shutil.rmtree(state_path)
+        console.print(f"[green]Cleared bisync state for project '{name}'[/green]")
+        console.print("\nNext steps:")
+        console.print(f"  1. Preview: bm project bisync --name {name} --resync --dry-run")
+        console.print(f"  2. Sync: bm project bisync --name {name} --resync")
+
+    except Exception as e:
+        console.print(f"[red]Error clearing bisync state: {str(e)}[/red]")
+        raise typer.Exit(1)
+
+
+@project_app.command("ls")
+def ls_project_command(
+    name: str = typer.Option(..., "--name", help="Project name to list files from"),
+    path: str = typer.Argument(None, help="Path within project (optional)"),
+) -> None:
+    """List files in remote project.
+
+    Examples:
+      bm project ls --name research
+      bm project ls --name research subfolder
+    """
+    config = ConfigManager().config
+    if not config.cloud_mode_enabled:
+        console.print("[red]Error: ls only available in cloud mode[/red]")
+        raise typer.Exit(1)
+
+    try:
+        # Get tenant info for bucket name
+        tenant_info = asyncio.run(get_mount_info())
+        bucket_name = tenant_info.bucket_name
+
+        # Get project info
+        async def _get_project():
+            async with get_client() as client:
+                response = await call_get(client, "/projects/projects")
+                projects_list = ProjectList.model_validate(response.json())
+                for proj in projects_list.projects:
+                    if generate_permalink(proj.name) == generate_permalink(name):
+                        return proj
+                return None
+
+        project_data = asyncio.run(_get_project())
+        if not project_data:
+            console.print(f"[red]Error: Project '{name}' not found[/red]")
+            raise typer.Exit(1)
+
+        # Create SyncProject (local_sync_path not needed for ls)
+        sync_project = SyncProject(
+            name=project_data.name,
+            path=normalize_project_path(project_data.path),
+        )
+
+        # List files
+        files = project_ls(sync_project, bucket_name, path=path)
+
+        if files:
+            console.print(f"\n[bold]Files in {name}" + (f"/{path}" if path else "") + ":[/bold]")
+            for file in files:
+                console.print(f"  {file}")
+            console.print(f"\n[dim]Total: {len(files)} files[/dim]")
+        else:
+            console.print(
+                f"[yellow]No files found in {name}" + (f"/{path}" if path else "") + "[/yellow]"
+            )
+
+    except Exception as e:
+        console.print(f"[red]Error: {e}[/red]")
+        raise typer.Exit(1)
+
+
 @project_app.command("info")
 def display_project_info(
+    name: str = typer.Argument(..., help="Name of the project"),
     json_output: bool = typer.Option(False, "--json", help="Output in JSON format"),
 ):
     """Display detailed information and statistics about the current project."""
     try:
         # Get project info
-        info = asyncio.run(project_info.fn())  # type: ignore  # pyright: ignore [reportAttributeAccessIssue]
+        info = asyncio.run(get_project_info(name))
 
         if json_output:
             # Convert to JSON and print
             print(json.dumps(info.model_dump(), indent=2, default=str))
         else:
-            # Create rich display
-            console = Console()
-
             # Project configuration section
             console.print(
                 Panel(
+                    f"Basic Memory version: [bold green]{info.system.version}[/bold green]\n"
                     f"[bold]Project:[/bold] {info.project_name}\n"
                     f"[bold]Path:[/bold] {info.project_path}\n"
                     f"[bold]Default Project:[/bold] {info.default_project}\n",
-                    title="📊 Basic Memory Project Info",
+                    title="Basic Memory Project Info",
                     expand=False,
                 )
             )
 
             # Statistics section
-            stats_table = Table(title="📈 Statistics")
+            stats_table = Table(title="Statistics")
             stats_table.add_column("Metric", style="cyan")
             stats_table.add_column("Count", style="green")
 
@@ -232,7 +806,7 @@ def display_project_info(
 
             # Entity types
             if info.statistics.entity_types:
-                entity_types_table = Table(title="📑 Entity Types")
+                entity_types_table = Table(title="Entity Types")
                 entity_types_table.add_column("Type", style="blue")
                 entity_types_table.add_column("Count", style="green")
 
@@ -243,7 +817,7 @@ def display_project_info(
 
             # Most connected entities
             if info.statistics.most_connected_entities:  # pragma: no cover
-                connected_table = Table(title="🔗 Most Connected Entities")
+                connected_table = Table(title="Most Connected Entities")
                 connected_table.add_column("Title", style="blue")
                 connected_table.add_column("Permalink", style="cyan")
                 connected_table.add_column("Relations", style="green")
@@ -257,7 +831,7 @@ def display_project_info(
 
             # Recent activity
             if info.activity.recently_updated:  # pragma: no cover
-                recent_table = Table(title="🕒 Recent Activity")
+                recent_table = Table(title="Recent Activity")
                 recent_table.add_column("Title", style="blue")
                 recent_table.add_column("Type", style="cyan")
                 recent_table.add_column("Last Updated", style="green")
@@ -276,44 +850,8 @@ def display_project_info(
 
                 console.print(recent_table)
 
-            # System status
-            system_tree = Tree("🖥️ System Status")
-            system_tree.add(f"Basic Memory version: [bold green]{info.system.version}[/bold green]")
-            system_tree.add(
-                f"Database: [cyan]{info.system.database_path}[/cyan] ([green]{info.system.database_size}[/green])"
-            )
-
-            # Watch status
-            if info.system.watch_status:  # pragma: no cover
-                watch_branch = system_tree.add("Watch Service")
-                running = info.system.watch_status.get("running", False)
-                status_color = "green" if running else "red"
-                watch_branch.add(
-                    f"Status: [bold {status_color}]{'Running' if running else 'Stopped'}[/bold {status_color}]"
-                )
-
-                if running:
-                    start_time = (
-                        datetime.fromisoformat(info.system.watch_status.get("start_time", ""))
-                        if isinstance(info.system.watch_status.get("start_time"), str)
-                        else info.system.watch_status.get("start_time")
-                    )
-                    watch_branch.add(
-                        f"Running since: [cyan]{start_time.strftime('%Y-%m-%d %H:%M')}[/cyan]"
-                    )
-                    watch_branch.add(
-                        f"Files synced: [green]{info.system.watch_status.get('synced_files', 0)}[/green]"
-                    )
-                    watch_branch.add(
-                        f"Errors: [{'red' if info.system.watch_status.get('error_count', 0) > 0 else 'green'}]{info.system.watch_status.get('error_count', 0)}[/{'red' if info.system.watch_status.get('error_count', 0) > 0 else 'green'}]"
-                    )
-            else:
-                system_tree.add("[yellow]Watch service not running[/yellow]")
-
-            console.print(system_tree)
-
             # Available projects
-            projects_table = Table(title="📁 Available Projects")
+            projects_table = Table(title="Available Projects")
             projects_table.add_column("Name", style="blue")
             projects_table.add_column("Path", style="cyan")
             projects_table.add_column("Default", style="green")
@@ -321,7 +859,7 @@ def display_project_info(
             for name, proj_info in info.available_projects.items():
                 is_default = name == info.default_project
                 project_path = proj_info["path"]
-                projects_table.add_row(name, project_path, "✓" if is_default else "")
+                projects_table.add_row(name, project_path, "[X]" if is_default else "")
 
             console.print(projects_table)
 

src/basic_memory/cli/commands/status.py

@@ -2,19 +2,20 @@
 
 import asyncio
 from typing import Set, Dict
+from typing import Annotated, Optional
 
+from mcp.server.fastmcp.exceptions import ToolError
 import typer
 from loguru import logger
 from rich.console import Console
 from rich.panel import Panel
 from rich.tree import Tree
 
-from basic_memory import db
 from basic_memory.cli.app import app
-from basic_memory.cli.commands.sync import get_sync_service
-from basic_memory.config import ConfigManager, get_project_config
-from basic_memory.repository import ProjectRepository
-from basic_memory.sync.sync_service import SyncReport
+from basic_memory.mcp.async_client import get_client
+from basic_memory.mcp.tools.utils import call_post
+from basic_memory.schemas import SyncReportResponse
+from basic_memory.mcp.project_context import get_active_project
 
 # Create rich console
 console = Console()
@@ -47,7 +48,7 @@ def add_files_to_tree(
                 branch.add(f"[{style}]{file_name}[/{style}]")
 
 
-def group_changes_by_directory(changes: SyncReport) -> Dict[str, Dict[str, int]]:
+def group_changes_by_directory(changes: SyncReportResponse) -> Dict[str, Dict[str, int]]:
     """Group changes by directory for summary view."""
     by_dir = {}
     for change_type, paths in [
@@ -87,11 +88,13 @@ def build_directory_summary(counts: Dict[str, int]) -> str:
     return " ".join(parts)
 
 
-def display_changes(project_name: str, title: str, changes: SyncReport, verbose: bool = False):
+def display_changes(
+    project_name: str, title: str, changes: SyncReportResponse, verbose: bool = False
+):
     """Display changes using Rich for better visualization."""
     tree = Tree(f"{project_name}: {title}")
 
-    if changes.total == 0:
+    if changes.total == 0 and not changes.skipped_files:
         tree.add("No changes")
         console.print(Panel(tree, expand=False))
         return
@@ -111,6 +114,13 @@ def display_changes(project_name: str, title: str, changes: SyncReport, verbose:
         if changes.deleted:
             del_branch = tree.add("[red]Deleted[/red]")
             add_files_to_tree(del_branch, changes.deleted, "red")
+        if changes.skipped_files:
+            skip_branch = tree.add("[red]! Skipped (Circuit Breaker)[/red]")
+            for skipped in sorted(changes.skipped_files, key=lambda x: x.path):
+                skip_branch.add(
+                    f"[red]{skipped.path}[/red] "
+                    f"(failures: {skipped.failure_count}, reason: {skipped.reason})"
+                )
     else:
         # Show directory summaries
         by_dir = group_changes_by_directory(changes)
@@ -119,36 +129,44 @@ def display_changes(project_name: str, title: str, changes: SyncReport, verbose:
             if summary:  # Only show directories with changes
                 tree.add(f"[bold]{dir_name}/[/bold] {summary}")
 
+        # Show skipped files summary in non-verbose mode
+        if changes.skipped_files:
+            skip_count = len(changes.skipped_files)
+            tree.add(
+                f"[red]! {skip_count} file{'s' if skip_count != 1 else ''} "
+                f"skipped due to repeated failures[/red]"
+            )
+
     console.print(Panel(tree, expand=False))
 
 
-async def run_status(verbose: bool = False):  # pragma: no cover
+async def run_status(project: Optional[str] = None, verbose: bool = False):  # pragma: no cover
     """Check sync status of files vs database."""
-    # Check knowledge/ directory
 
-    app_config = ConfigManager().config
-    config = get_project_config()
+    try:
+        async with get_client() as client:
+            project_item = await get_active_project(client, project, None)
+            response = await call_post(client, f"{project_item.project_url}/project/status")
+            sync_report = SyncReportResponse.model_validate(response.json())
 
-    _, session_maker = await db.get_or_create_db(
-        db_path=app_config.database_path, db_type=db.DatabaseType.FILESYSTEM
-    )
-    project_repository = ProjectRepository(session_maker)
-    project = await project_repository.get_by_name(config.project)
-    if not project:  # pragma: no cover
-        raise Exception(f"Project '{config.project}' not found")
+            display_changes(project_item.name, "Status", sync_report, verbose)
 
-    sync_service = await get_sync_service(project)
-    knowledge_changes = await sync_service.scan(config.home)
-    display_changes(project.name, "Status", knowledge_changes, verbose)
+    except (ValueError, ToolError) as e:
+        console.print(f"[red]Error: {e}[/red]")
+        raise typer.Exit(1)
 
 
 @app.command()
 def status(
+    project: Annotated[
+        Optional[str],
+        typer.Option(help="The project name."),
+    ] = None,
     verbose: bool = typer.Option(False, "--verbose", "-v", help="Show detailed file information"),
 ):
     """Show sync status between files and database."""
     try:
-        asyncio.run(run_status(verbose))  # pragma: no cover
+        asyncio.run(run_status(project, verbose))  # pragma: no cover
     except Exception as e:
         logger.error(f"Error checking status: {e}")
         typer.echo(f"Error checking status: {e}", err=True)

src/basic_memory/cli/commands/sync.py

@@ -1,242 +0,0 @@
-"""Command module for basic-memory sync operations."""
-
-import asyncio
-from collections import defaultdict
-from dataclasses import dataclass
-from pathlib import Path
-from typing import List, Dict
-
-import typer
-from loguru import logger
-from rich.console import Console
-from rich.tree import Tree
-
-from basic_memory import db
-from basic_memory.cli.app import app
-from basic_memory.config import ConfigManager, get_project_config
-from basic_memory.markdown import EntityParser
-from basic_memory.markdown.markdown_processor import MarkdownProcessor
-from basic_memory.models import Project
-from basic_memory.repository import (
-    EntityRepository,
-    ObservationRepository,
-    RelationRepository,
-    ProjectRepository,
-)
-from basic_memory.repository.search_repository import SearchRepository
-from basic_memory.services import EntityService, FileService
-from basic_memory.services.link_resolver import LinkResolver
-from basic_memory.services.search_service import SearchService
-from basic_memory.sync import SyncService
-from basic_memory.sync.sync_service import SyncReport
-
-console = Console()
-
-
-@dataclass
-class ValidationIssue:
-    file_path: str
-    error: str
-
-
-async def get_sync_service(project: Project) -> SyncService:  # pragma: no cover
-    """Get sync service instance with all dependencies."""
-
-    app_config = ConfigManager().config
-    _, session_maker = await db.get_or_create_db(
-        db_path=app_config.database_path, db_type=db.DatabaseType.FILESYSTEM
-    )
-
-    project_path = Path(project.path)
-    entity_parser = EntityParser(project_path)
-    markdown_processor = MarkdownProcessor(entity_parser)
-    file_service = FileService(project_path, markdown_processor)
-
-    # Initialize repositories
-    entity_repository = EntityRepository(session_maker, project_id=project.id)
-    observation_repository = ObservationRepository(session_maker, project_id=project.id)
-    relation_repository = RelationRepository(session_maker, project_id=project.id)
-    search_repository = SearchRepository(session_maker, project_id=project.id)
-
-    # Initialize services
-    search_service = SearchService(search_repository, entity_repository, file_service)
-    link_resolver = LinkResolver(entity_repository, search_service)
-
-    # Initialize services
-    entity_service = EntityService(
-        entity_parser,
-        entity_repository,
-        observation_repository,
-        relation_repository,
-        file_service,
-        link_resolver,
-    )
-
-    # Create sync service
-    sync_service = SyncService(
-        app_config=app_config,
-        entity_service=entity_service,
-        entity_parser=entity_parser,
-        entity_repository=entity_repository,
-        relation_repository=relation_repository,
-        search_service=search_service,
-        file_service=file_service,
-    )
-
-    return sync_service
-
-
-def group_issues_by_directory(issues: List[ValidationIssue]) -> Dict[str, List[ValidationIssue]]:
-    """Group validation issues by directory."""
-    grouped = defaultdict(list)
-    for issue in issues:
-        dir_name = Path(issue.file_path).parent.name
-        grouped[dir_name].append(issue)
-    return dict(grouped)
-
-
-def display_sync_summary(knowledge: SyncReport):
-    """Display a one-line summary of sync changes."""
-    config = get_project_config()
-    total_changes = knowledge.total
-    project_name = config.project
-
-    if total_changes == 0:
-        console.print(f"[green]Project '{project_name}': Everything up to date[/green]")
-        return
-
-    # Format as: "Synced X files (A new, B modified, C moved, D deleted)"
-    changes = []
-    new_count = len(knowledge.new)
-    mod_count = len(knowledge.modified)
-    move_count = len(knowledge.moves)
-    del_count = len(knowledge.deleted)
-
-    if new_count:
-        changes.append(f"[green]{new_count} new[/green]")
-    if mod_count:
-        changes.append(f"[yellow]{mod_count} modified[/yellow]")
-    if move_count:
-        changes.append(f"[blue]{move_count} moved[/blue]")
-    if del_count:
-        changes.append(f"[red]{del_count} deleted[/red]")
-
-    console.print(f"Project '{project_name}': Synced {total_changes} files ({', '.join(changes)})")
-
-
-def display_detailed_sync_results(knowledge: SyncReport):
-    """Display detailed sync results with trees."""
-    config = get_project_config()
-    project_name = config.project
-
-    if knowledge.total == 0:
-        console.print(f"\n[green]Project '{project_name}': Everything up to date[/green]")
-        return
-
-    console.print(f"\n[bold]Sync Results for Project '{project_name}'[/bold]")
-
-    if knowledge.total > 0:
-        knowledge_tree = Tree("[bold]Knowledge Files[/bold]")
-        if knowledge.new:
-            created = knowledge_tree.add("[green]Created[/green]")
-            for path in sorted(knowledge.new):
-                checksum = knowledge.checksums.get(path, "")
-                created.add(f"[green]{path}[/green] ({checksum[:8]})")
-        if knowledge.modified:
-            modified = knowledge_tree.add("[yellow]Modified[/yellow]")
-            for path in sorted(knowledge.modified):
-                checksum = knowledge.checksums.get(path, "")
-                modified.add(f"[yellow]{path}[/yellow] ({checksum[:8]})")
-        if knowledge.moves:
-            moved = knowledge_tree.add("[blue]Moved[/blue]")
-            for old_path, new_path in sorted(knowledge.moves.items()):
-                checksum = knowledge.checksums.get(new_path, "")
-                moved.add(f"[blue]{old_path}[/blue] → [blue]{new_path}[/blue] ({checksum[:8]})")
-        if knowledge.deleted:
-            deleted = knowledge_tree.add("[red]Deleted[/red]")
-            for path in sorted(knowledge.deleted):
-                deleted.add(f"[red]{path}[/red]")
-        console.print(knowledge_tree)
-
-
-async def run_sync(verbose: bool = False):
-    """Run sync operation."""
-    app_config = ConfigManager().config
-    config = get_project_config()
-
-    _, session_maker = await db.get_or_create_db(
-        db_path=app_config.database_path, db_type=db.DatabaseType.FILESYSTEM
-    )
-    project_repository = ProjectRepository(session_maker)
-    project = await project_repository.get_by_name(config.project)
-    if not project:  # pragma: no cover
-        raise Exception(f"Project '{config.project}' not found")
-
-    import time
-
-    start_time = time.time()
-
-    logger.info(
-        "Sync command started",
-        project=config.project,
-        verbose=verbose,
-        directory=str(config.home),
-    )
-
-    sync_service = await get_sync_service(project)
-
-    logger.info("Running one-time sync")
-    knowledge_changes = await sync_service.sync(config.home, project_name=project.name)
-
-    # Log results
-    duration_ms = int((time.time() - start_time) * 1000)
-    logger.info(
-        "Sync command completed",
-        project=config.project,
-        total_changes=knowledge_changes.total,
-        new_files=len(knowledge_changes.new),
-        modified_files=len(knowledge_changes.modified),
-        deleted_files=len(knowledge_changes.deleted),
-        moved_files=len(knowledge_changes.moves),
-        duration_ms=duration_ms,
-    )
-
-    # Display results
-    if verbose:
-        display_detailed_sync_results(knowledge_changes)
-    else:
-        display_sync_summary(knowledge_changes)  # pragma: no cover
-
-
-@app.command()
-def sync(
-    verbose: bool = typer.Option(
-        False,
-        "--verbose",
-        "-v",
-        help="Show detailed sync information.",
-    ),
-) -> None:
-    """Sync knowledge files with the database."""
-    config = get_project_config()
-
-    try:
-        # Show which project we're syncing
-        typer.echo(f"Syncing project: {config.project}")
-        typer.echo(f"Project path: {config.home}")
-
-        # Run sync
-        asyncio.run(run_sync(verbose=verbose))
-
-    except Exception as e:  # pragma: no cover
-        if not isinstance(e, typer.Exit):
-            logger.exception(
-                "Sync command failed",
-                f"project={config.project},"
-                f"error={str(e)},"
-                f"error_type={type(e).__name__},"
-                f"directory={str(config.home)}",
-            )
-            typer.echo(f"Error during sync: {e}", err=True)
-            raise typer.Exit(1)
-        raise

src/basic_memory/cli/commands/tool.py

@@ -9,6 +9,7 @@ from loguru import logger
 from rich import print as rprint
 
 from basic_memory.cli.app import app
+from basic_memory.config import ConfigManager
 
 # Import prompts
 from basic_memory.mcp.prompts.continue_conversation import (
@@ -34,6 +35,12 @@ app.add_typer(tool_app, name="tool", help="Access to MCP tools via CLI")
 def write_note(
     title: Annotated[str, typer.Option(help="The title of the note")],
     folder: Annotated[str, typer.Option(help="The folder to create the note in")],
+    project: Annotated[
+        Optional[str],
+        typer.Option(
+            help="The project to write to. If not provided, the default project will be used."
+        ),
+    ] = None,
     content: Annotated[
         Optional[str],
         typer.Option(
@@ -90,7 +97,19 @@ def write_note(
             typer.echo("Empty content provided. Please provide non-empty content.", err=True)
             raise typer.Exit(1)
 
-        note = asyncio.run(mcp_write_note.fn(title, content, folder, tags))
+        # look for the project in the config
+        config_manager = ConfigManager()
+        project_name = None
+        if project is not None:
+            project_name, _ = config_manager.get_project(project)
+            if not project_name:
+                typer.echo(f"No project found named: {project}", err=True)
+                raise typer.Exit(1)
+
+        # use the project name, or the default from the config
+        project_name = project_name or config_manager.default_project
+
+        note = asyncio.run(mcp_write_note.fn(title, content, folder, project_name, tags))
         rprint(note)
     except Exception as e:  # pragma: no cover
         if not isinstance(e, typer.Exit):
@@ -100,10 +119,33 @@ def write_note(
 
 
 @tool_app.command()
-def read_note(identifier: str, page: int = 1, page_size: int = 10):
+def read_note(
+    identifier: str,
+    project: Annotated[
+        Optional[str],
+        typer.Option(
+            help="The project to use for the note. If not provided, the default project will be used."
+        ),
+    ] = None,
+    page: int = 1,
+    page_size: int = 10,
+):
     """Read a markdown note from the knowledge base."""
+
+    # look for the project in the config
+    config_manager = ConfigManager()
+    project_name = None
+    if project is not None:
+        project_name, _ = config_manager.get_project(project)
+        if not project_name:
+            typer.echo(f"No project found named: {project}", err=True)
+            raise typer.Exit(1)
+
+    # use the project name, or the default from the config
+    project_name = project_name or config_manager.default_project
+
     try:
-        note = asyncio.run(mcp_read_note.fn(identifier, page, page_size))
+        note = asyncio.run(mcp_read_note.fn(identifier, project_name, page, page_size))
         rprint(note)
     except Exception as e:  # pragma: no cover
         if not isinstance(e, typer.Exit):
@@ -115,6 +157,10 @@ def read_note(identifier: str, page: int = 1, page_size: int = 10):
 @tool_app.command()
 def build_context(
     url: MemoryUrl,
+    project: Annotated[
+        Optional[str],
+        typer.Option(help="The project to use. If not provided, the default project will be used."),
+    ] = None,
     depth: Optional[int] = 1,
     timeframe: Optional[TimeFrame] = "7d",
     page: int = 1,
@@ -122,9 +168,23 @@ def build_context(
     max_related: int = 10,
 ):
     """Get context needed to continue a discussion."""
+
+    # look for the project in the config
+    config_manager = ConfigManager()
+    project_name = None
+    if project is not None:
+        project_name, _ = config_manager.get_project(project)
+        if not project_name:
+            typer.echo(f"No project found named: {project}", err=True)
+            raise typer.Exit(1)
+
+    # use the project name, or the default from the config
+    project_name = project_name or config_manager.default_project
+
     try:
         context = asyncio.run(
             mcp_build_context.fn(
+                project=project_name,
                 url=url,
                 depth=depth,
                 timeframe=timeframe,
@@ -150,30 +210,21 @@ def recent_activity(
     type: Annotated[Optional[List[SearchItemType]], typer.Option()] = None,
     depth: Optional[int] = 1,
     timeframe: Optional[TimeFrame] = "7d",
-    page: int = 1,
-    page_size: int = 10,
-    max_related: int = 10,
 ):
     """Get recent activity across the knowledge base."""
     try:
-        context = asyncio.run(
+        result = asyncio.run(
             mcp_recent_activity.fn(
                 type=type,  # pyright: ignore [reportArgumentType]
                 depth=depth,
                 timeframe=timeframe,
-                page=page,
-                page_size=page_size,
-                max_related=max_related,
             )
         )
-        # Use json module for more controlled serialization
-        import json
-
-        context_dict = context.model_dump(exclude_none=True)
-        print(json.dumps(context_dict, indent=2, ensure_ascii=True, default=str))
+        # The tool now returns a formatted string directly
+        print(result)
     except Exception as e:  # pragma: no cover
         if not isinstance(e, typer.Exit):
-            typer.echo(f"Error during build_context: {e}", err=True)
+            typer.echo(f"Error during recent_activity: {e}", err=True)
             raise typer.Exit(1)
         raise
 
@@ -183,6 +234,12 @@ def search_notes(
     query: str,
     permalink: Annotated[bool, typer.Option("--permalink", help="Search permalink values")] = False,
     title: Annotated[bool, typer.Option("--title", help="Search title values")] = False,
+    project: Annotated[
+        Optional[str],
+        typer.Option(
+            help="The project to use for the note. If not provided, the default project will be used."
+        ),
+    ] = None,
     after_date: Annotated[
         Optional[str],
         typer.Option("--after_date", help="Search results after date, eg. '2d', '1 week'"),
@@ -191,6 +248,19 @@ def search_notes(
     page_size: int = 10,
 ):
     """Search across all content in the knowledge base."""
+
+    # look for the project in the config
+    config_manager = ConfigManager()
+    project_name = None
+    if project is not None:
+        project_name, _ = config_manager.get_project(project)
+        if not project_name:
+            typer.echo(f"No project found named: {project}", err=True)
+            raise typer.Exit(1)
+
+    # use the project name, or the default from the config
+    project_name = project_name or config_manager.default_project
+
     if permalink and title:  # pragma: no cover
         print("Cannot search both permalink and title")
         raise typer.Abort()
@@ -212,6 +282,7 @@ def search_notes(
         results = asyncio.run(
             mcp_search.fn(
                 query,
+                project_name,
                 search_type=search_type,
                 page=page,
                 after_date=after_date,

src/basic_memory/cli/main.py

@@ -4,6 +4,7 @@ from basic_memory.cli.app import app  # pragma: no cover
 
 # Register commands
 from basic_memory.cli.commands import (  # noqa: F401  # pragma: no cover
+    cloud,
     db,
     import_chatgpt,
     import_claude_conversations,
@@ -12,7 +13,6 @@ from basic_memory.cli.commands import (  # noqa: F401  # pragma: no cover
     mcp,
     project,
     status,
-    sync,
     tool,
 )
 

src/basic_memory/config.py

@@ -3,11 +3,12 @@
 import json
 import os
 from dataclasses import dataclass
+from datetime import datetime
 from pathlib import Path
 from typing import Any, Dict, Literal, Optional, List, Tuple
 
 from loguru import logger
-from pydantic import Field, field_validator
+from pydantic import BaseModel, Field, field_validator
 from pydantic_settings import BaseSettings, SettingsConfigDict
 
 import basic_memory
@@ -39,6 +40,22 @@ class ProjectConfig:
         return f"/{generate_permalink(self.name)}"
 
 
+class CloudProjectConfig(BaseModel):
+    """Sync configuration for a cloud project.
+
+    This tracks the local working directory and sync state for a project
+    that is synced with Basic Memory Cloud.
+    """
+
+    local_path: str = Field(description="Local working directory path for this cloud project")
+    last_sync: Optional[datetime] = Field(
+        default=None, description="Timestamp of last successful sync operation"
+    )
+    bisync_initialized: bool = Field(
+        default=False, description="Whether rclone bisync baseline has been established"
+    )
+
+
 class BasicMemoryConfig(BaseSettings):
     """Pydantic model for Basic Memory global configuration."""
 
@@ -54,6 +71,10 @@ class BasicMemoryConfig(BaseSettings):
         default="main",
         description="Name of the default project to use",
     )
+    default_project_mode: bool = Field(
+        default=False,
+        description="When True, MCP tools automatically use default_project when no project parameter is specified. Enables simplified UX for single-project workflows.",
+    )
 
     # overridden by ~/.basic-memory/config.json
     log_level: str = "INFO"
@@ -63,6 +84,10 @@ class BasicMemoryConfig(BaseSettings):
         default=1000, description="Milliseconds to wait after changes before syncing", gt=0
     )
 
+    watch_project_reload_interval: int = Field(
+        default=30, description="Seconds between reloading project list in watch service", gt=0
+    )
+
     # update permalinks on move
     update_permalinks_on_move: bool = Field(
         default=False,
@@ -74,22 +99,86 @@ class BasicMemoryConfig(BaseSettings):
         description="Whether to sync changes in real time. default (True)",
     )
 
+    sync_thread_pool_size: int = Field(
+        default=4,
+        description="Size of thread pool for file I/O operations in sync service. Default of 4 is optimized for cloud deployments with 1-2GB RAM.",
+        gt=0,
+    )
+
+    sync_max_concurrent_files: int = Field(
+        default=10,
+        description="Maximum number of files to process concurrently during sync. Limits memory usage on large projects (2000+ files). Lower values reduce memory consumption.",
+        gt=0,
+    )
+
     kebab_filenames: bool = Field(
         default=False,
         description="Format for generated filenames. False preserves spaces and special chars, True converts them to hyphens for consistency with permalinks",
     )
 
-    # API connection configuration
-    api_url: Optional[str] = Field(
-        default=None,
-        description="URL of remote Basic Memory API. If set, MCP will connect to this API instead of using local ASGI transport.",
+    disable_permalinks: bool = Field(
+        default=False,
+        description="Disable automatic permalink generation in frontmatter. When enabled, new notes won't have permalinks added and sync won't update permalinks. Existing permalinks will still work for reading.",
     )
 
+    skip_initialization_sync: bool = Field(
+        default=False,
+        description="Skip expensive initialization synchronization. Useful for cloud/stateless deployments where project reconciliation is not needed.",
+    )
+
+    # Project path constraints
+    project_root: Optional[str] = Field(
+        default=None,
+        description="If set, all projects must be created underneath this directory. Paths will be sanitized and constrained to this root. If not set, projects can be created anywhere (default behavior).",
+    )
+
+    # Cloud configuration
+    cloud_client_id: str = Field(
+        default="client_01K6KWQPW6J1M8VV7R3TZP5A6M",
+        description="OAuth client ID for Basic Memory Cloud",
+    )
+
+    cloud_domain: str = Field(
+        default="https://eloquent-lotus-05.authkit.app",
+        description="AuthKit domain for Basic Memory Cloud",
+    )
+
+    cloud_host: str = Field(
+        default_factory=lambda: os.getenv(
+            "BASIC_MEMORY_CLOUD_HOST", "https://cloud.basicmemory.com"
+        ),
+        description="Basic Memory Cloud host URL",
+    )
+
+    cloud_mode: bool = Field(
+        default=False,
+        description="Enable cloud mode - all requests go to cloud instead of local (config file value)",
+    )
+
+    cloud_projects: Dict[str, CloudProjectConfig] = Field(
+        default_factory=dict,
+        description="Cloud project sync configuration mapping project names to their local paths and sync state",
+    )
+
+    @property
+    def cloud_mode_enabled(self) -> bool:
+        """Check if cloud mode is enabled.
+
+        Priority:
+        1. BASIC_MEMORY_CLOUD_MODE environment variable
+        2. Config file value (cloud_mode)
+        """
+        env_value = os.environ.get("BASIC_MEMORY_CLOUD_MODE", "").lower()
+        if env_value in ("true", "1", "yes"):
+            return True
+        elif env_value in ("false", "0", "no"):
+            return False
+        # Fall back to config file value
+        return self.cloud_mode
+
     model_config = SettingsConfigDict(
         env_prefix="BASIC_MEMORY_",
         extra="ignore",
-        env_file=".env",
-        env_file_encoding="utf-8",
     )
 
     def get_project_path(self, project_name: Optional[str] = None) -> Path:  # pragma: no cover
@@ -158,6 +247,14 @@ class BasicMemoryConfig(BaseSettings):
                     raise e
         return v
 
+    @property
+    def data_dir_path(self):
+        return Path.home() / DATA_DIR_NAME
+
+
+# Module-level cache for configuration
+_CONFIG_CACHE: Optional[BasicMemoryConfig] = None
+
 
 class ConfigManager:
     """Manages Basic Memory configuration."""
@@ -168,7 +265,12 @@ class ConfigManager:
         if isinstance(home, str):
             home = Path(home)
 
-        self.config_dir = home / DATA_DIR_NAME
+        # Allow override via environment variable
+        if config_dir := os.getenv("BASIC_MEMORY_CONFIG_DIR"):
+            self.config_dir = Path(config_dir)
+        else:
+            self.config_dir = home / DATA_DIR_NAME
+
         self.config_file = self.config_dir / CONFIG_FILE_NAME
 
         # Ensure config directory exists
@@ -180,12 +282,45 @@ class ConfigManager:
         return self.load_config()
 
     def load_config(self) -> BasicMemoryConfig:
-        """Load configuration from file or create default."""
+        """Load configuration from file or create default.
+
+        Environment variables take precedence over file config values,
+        following Pydantic Settings best practices.
+
+        Uses module-level cache for performance across ConfigManager instances.
+        """
+        global _CONFIG_CACHE
+
+        # Return cached config if available
+        if _CONFIG_CACHE is not None:
+            return _CONFIG_CACHE
 
         if self.config_file.exists():
             try:
-                data = json.loads(self.config_file.read_text(encoding="utf-8"))
-                return BasicMemoryConfig(**data)
+                file_data = json.loads(self.config_file.read_text(encoding="utf-8"))
+
+                # First, create config from environment variables (Pydantic will read them)
+                # Then overlay with file data for fields that aren't set via env vars
+                # This ensures env vars take precedence
+
+                # Get env-based config fields that are actually set
+                env_config = BasicMemoryConfig()
+                env_dict = env_config.model_dump()
+
+                # Merge: file data as base, but only use it for fields not set by env
+                # We detect env-set fields by comparing to default values
+                merged_data = file_data.copy()
+
+                # For fields that have env var overrides, use those instead of file values
+                # The env_prefix is "BASIC_MEMORY_" so we check those
+                for field_name in BasicMemoryConfig.model_fields.keys():
+                    env_var_name = f"BASIC_MEMORY_{field_name.upper()}"
+                    if env_var_name in os.environ:
+                        # Environment variable is set, use it
+                        merged_data[field_name] = env_dict[field_name]
+
+                _CONFIG_CACHE = BasicMemoryConfig(**merged_data)
+                return _CONFIG_CACHE
             except Exception as e:  # pragma: no cover
                 logger.exception(f"Failed to load config: {e}")
                 raise e
@@ -195,8 +330,11 @@ class ConfigManager:
             return config
 
     def save_config(self, config: BasicMemoryConfig) -> None:
-        """Save configuration to file."""
+        """Save configuration to file and invalidate cache."""
+        global _CONFIG_CACHE
         save_basic_memory_config(self.config_file, config)
+        # Invalidate cache so next load_config() reads fresh data
+        _CONFIG_CACHE = None
 
     @property
     def projects(self) -> Dict[str, str]:
@@ -236,7 +374,8 @@ class ConfigManager:
         if project_name == config.default_project:  # pragma: no cover
             raise ValueError(f"Cannot remove the default project '{name}'")
 
-        del config.projects[name]
+        # Use the found project_name (which may differ from input name due to permalink matching)
+        del config.projects[project_name]
         self.save_config(config)
 
     def set_default_project(self, name: str) -> None:
@@ -276,7 +415,7 @@ def get_project_config(project_name: Optional[str] = None) -> ProjectConfig:
     os_project_name = os.environ.get("BASIC_MEMORY_PROJECT", None)
     if os_project_name:  # pragma: no cover
         logger.warning(
-            f"BASIC_MEMORY_PROJECT is not supported anymore. Use the --project flag or set the default project in the config instead. Setting default project to {os_project_name}"
+            f"BASIC_MEMORY_PROJECT is not supported anymore. Set the default project in the config instead. Setting default project to {os_project_name}"
         )
         actual_project_name = project_name
     # if the project_name is passed in, use it
@@ -302,20 +441,13 @@ def get_project_config(project_name: Optional[str] = None) -> ProjectConfig:
 def save_basic_memory_config(file_path: Path, config: BasicMemoryConfig) -> None:
     """Save configuration to file."""
     try:
-        file_path.write_text(json.dumps(config.model_dump(), indent=2))
+        # Use model_dump with mode='json' to serialize datetime objects properly
+        config_dict = config.model_dump(mode="json")
+        file_path.write_text(json.dumps(config_dict, indent=2))
     except Exception as e:  # pragma: no cover
         logger.error(f"Failed to save config: {e}")
 
 
-def update_current_project(project_name: str) -> None:
-    """Update the global config to use a different project.
-
-    This is used by the CLI when --project flag is specified.
-    """
-    global config
-    config = get_project_config(project_name)  # pragma: no cover
-
-
 # setup logging to a single log file in user home directory
 user_home = Path.home()
 log_dir = user_home / DATA_DIR_NAME

src/basic_memory/db.py

@@ -1,4 +1,5 @@
 import asyncio
+import os
 from contextlib import asynccontextmanager
 from enum import Enum, auto
 from pathlib import Path
@@ -9,7 +10,7 @@ from alembic import command
 from alembic.config import Config
 
 from loguru import logger
-from sqlalchemy import text
+from sqlalchemy import text, event
 from sqlalchemy.ext.asyncio import (
     create_async_engine,
     async_sessionmaker,
@@ -17,6 +18,7 @@ from sqlalchemy.ext.asyncio import (
     AsyncEngine,
     async_scoped_session,
 )
+from sqlalchemy.pool import NullPool
 
 from basic_memory.repository.search_repository import SearchRepository
 
@@ -73,13 +75,77 @@ async def scoped_session(
         await factory.remove()
 
 
+def _configure_sqlite_connection(dbapi_conn, enable_wal: bool = True) -> None:
+    """Configure SQLite connection with WAL mode and optimizations.
+
+    Args:
+        dbapi_conn: Database API connection object
+        enable_wal: Whether to enable WAL mode (should be False for in-memory databases)
+    """
+    cursor = dbapi_conn.cursor()
+    try:
+        # Enable WAL mode for better concurrency (not supported for in-memory databases)
+        if enable_wal:
+            cursor.execute("PRAGMA journal_mode=WAL")
+        # Set busy timeout to handle locked databases
+        cursor.execute("PRAGMA busy_timeout=10000")  # 10 seconds
+        # Optimize for performance
+        cursor.execute("PRAGMA synchronous=NORMAL")
+        cursor.execute("PRAGMA cache_size=-64000")  # 64MB cache
+        cursor.execute("PRAGMA temp_store=MEMORY")
+        # Windows-specific optimizations
+        if os.name == "nt":
+            cursor.execute("PRAGMA locking_mode=NORMAL")  # Ensure normal locking on Windows
+    except Exception as e:
+        # Log but don't fail - some PRAGMAs may not be supported
+        logger.warning(f"Failed to configure SQLite connection: {e}")
+    finally:
+        cursor.close()
+
+
 def _create_engine_and_session(
     db_path: Path, db_type: DatabaseType = DatabaseType.FILESYSTEM
 ) -> tuple[AsyncEngine, async_sessionmaker[AsyncSession]]:
     """Internal helper to create engine and session maker."""
     db_url = DatabaseType.get_db_url(db_path, db_type)
     logger.debug(f"Creating engine for db_url: {db_url}")
-    engine = create_async_engine(db_url, connect_args={"check_same_thread": False})
+
+    # Configure connection args with Windows-specific settings
+    connect_args: dict[str, bool | float | None] = {"check_same_thread": False}
+
+    # Add Windows-specific parameters to improve reliability
+    if os.name == "nt":  # Windows
+        connect_args.update(
+            {
+                "timeout": 30.0,  # Increase timeout to 30 seconds for Windows
+                "isolation_level": None,  # Use autocommit mode
+            }
+        )
+        # Use NullPool for Windows filesystem databases to avoid connection pooling issues
+        # Important: Do NOT use NullPool for in-memory databases as it will destroy the database
+        # between connections
+        if db_type == DatabaseType.FILESYSTEM:
+            engine = create_async_engine(
+                db_url,
+                connect_args=connect_args,
+                poolclass=NullPool,  # Disable connection pooling on Windows
+                echo=False,
+            )
+        else:
+            # In-memory databases need connection pooling to maintain state
+            engine = create_async_engine(db_url, connect_args=connect_args)
+    else:
+        engine = create_async_engine(db_url, connect_args=connect_args)
+
+    # Enable WAL mode for better concurrency and reliability
+    # Note: WAL mode is not supported for in-memory databases
+    enable_wal = db_type != DatabaseType.MEMORY
+
+    @event.listens_for(engine.sync_engine, "connect")
+    def enable_wal_mode(dbapi_conn, connection_record):
+        """Enable WAL mode on each connection."""
+        _configure_sqlite_connection(dbapi_conn, enable_wal=enable_wal)
+
     session_maker = async_sessionmaker(engine, expire_on_commit=False)
     return engine, session_maker
 
@@ -140,7 +206,42 @@ async def engine_session_factory(
     db_url = DatabaseType.get_db_url(db_path, db_type)
     logger.debug(f"Creating engine for db_url: {db_url}")
 
-    _engine = create_async_engine(db_url, connect_args={"check_same_thread": False})
+    # Configure connection args with Windows-specific settings
+    connect_args: dict[str, bool | float | None] = {"check_same_thread": False}
+
+    # Add Windows-specific parameters to improve reliability
+    if os.name == "nt":  # Windows
+        connect_args.update(
+            {
+                "timeout": 30.0,  # Increase timeout to 30 seconds for Windows
+                "isolation_level": None,  # Use autocommit mode
+            }
+        )
+        # Use NullPool for Windows filesystem databases to avoid connection pooling issues
+        # Important: Do NOT use NullPool for in-memory databases as it will destroy the database
+        # between connections
+        if db_type == DatabaseType.FILESYSTEM:
+            _engine = create_async_engine(
+                db_url,
+                connect_args=connect_args,
+                poolclass=NullPool,  # Disable connection pooling on Windows
+                echo=False,
+            )
+        else:
+            # In-memory databases need connection pooling to maintain state
+            _engine = create_async_engine(db_url, connect_args=connect_args)
+    else:
+        _engine = create_async_engine(db_url, connect_args=connect_args)
+
+    # Enable WAL mode for better concurrency and reliability
+    # Note: WAL mode is not supported for in-memory databases
+    enable_wal = db_type != DatabaseType.MEMORY
+
+    @event.listens_for(_engine.sync_engine, "connect")
+    def enable_wal_mode(dbapi_conn, connection_record):
+        """Enable WAL mode on each connection."""
+        _configure_sqlite_connection(dbapi_conn, enable_wal=enable_wal)
+
     try:
         _session_maker = async_sessionmaker(_engine, expire_on_commit=False)
 

src/basic_memory/deps.py

@@ -3,7 +3,7 @@
 from typing import Annotated
 from loguru import logger
 
-from fastapi import Depends, HTTPException, Path, status
+from fastapi import Depends, HTTPException, Path, status, Request
 from sqlalchemy.ext.asyncio import (
     AsyncSession,
     AsyncEngine,
@@ -33,6 +33,7 @@ from basic_memory.services.file_service import FileService
 from basic_memory.services.link_resolver import LinkResolver
 from basic_memory.services.search_service import SearchService
 from basic_memory.sync import SyncService
+from basic_memory.utils import generate_permalink
 
 
 def get_app_config() -> BasicMemoryConfig:  # pragma: no cover
@@ -61,8 +62,9 @@ async def get_project_config(
     Raises:
         HTTPException: If project is not found
     """
-
-    project_obj = await project_repository.get_by_permalink(str(project))
+    # Convert project name to permalink for lookup
+    project_permalink = generate_permalink(str(project))
+    project_obj = await project_repository.get_by_permalink(project_permalink)
     if project_obj:
         return ProjectConfig(name=project_obj.name, home=pathlib.Path(project_obj.path))
 
@@ -78,9 +80,24 @@ ProjectConfigDep = Annotated[ProjectConfig, Depends(get_project_config)]  # prag
 
 
 async def get_engine_factory(
-    app_config: AppConfigDep,
+    request: Request,
 ) -> tuple[AsyncEngine, async_sessionmaker[AsyncSession]]:  # pragma: no cover
-    """Get engine and session maker."""
+    """Get cached engine and session maker from app state.
+
+    For API requests, returns cached connections from app.state for optimal performance.
+    For non-API contexts (CLI), falls back to direct database connection.
+    """
+    # Try to get cached connections from app state (API context)
+    if (
+        hasattr(request, "app")
+        and hasattr(request.app.state, "engine")
+        and hasattr(request.app.state, "session_maker")
+    ):
+        return request.app.state.engine, request.app.state.session_maker
+
+    # Fallback for non-API contexts (CLI)
+    logger.debug("Using fallback database connection for non-API context")
+    app_config = get_app_config()
     engine, session_maker = await db.get_or_create_db(app_config.database_path)
     return engine, session_maker
 
@@ -132,9 +149,9 @@ async def get_project_id(
     Raises:
         HTTPException: If project is not found
     """
-
-    # Try by permalink first (most common case with URL paths)
-    project_obj = await project_repository.get_by_permalink(str(project))
+    # Convert project name to permalink for lookup
+    project_permalink = generate_permalink(str(project))
+    project_obj = await project_repository.get_by_permalink(project_permalink)
     if project_obj:
         return project_obj.id
 
@@ -245,6 +262,7 @@ async def get_entity_service(
     entity_parser: EntityParserDep,
     file_service: FileServiceDep,
     link_resolver: "LinkResolverDep",
+    app_config: AppConfigDep,
 ) -> EntityService:
     """Create EntityService with repository."""
     return EntityService(
@@ -254,6 +272,7 @@ async def get_entity_service(
         entity_parser=entity_parser,
         file_service=file_service,
         link_resolver=link_resolver,
+        app_config=app_config,
     )
 
 
@@ -302,6 +321,7 @@ async def get_sync_service(
     entity_parser: EntityParserDep,
     entity_repository: EntityRepositoryDep,
     relation_repository: RelationRepositoryDep,
+    project_repository: ProjectRepositoryDep,
     search_service: SearchServiceDep,
     file_service: FileServiceDep,
 ) -> SyncService:  # pragma: no cover
@@ -315,6 +335,7 @@ async def get_sync_service(
         entity_parser=entity_parser,
         entity_repository=entity_repository,
         relation_repository=relation_repository,
+        project_repository=project_repository,
         search_service=search_service,
         file_service=file_service,
     )

src/basic_memory/file_utils.py

@@ -5,6 +5,7 @@ from pathlib import Path
 import re
 from typing import Any, Dict, Union
 
+import aiofiles
 import yaml
 import frontmatter
 from loguru import logger
@@ -52,29 +53,12 @@ async def compute_checksum(content: Union[str, bytes]) -> str:
         raise FileError(f"Failed to compute checksum: {e}")
 
 
-async def ensure_directory(path: FilePath) -> None:
-    """
-    Ensure directory exists, creating if necessary.
-
-    Args:
-        path: Directory path to ensure (Path or string)
-
-    Raises:
-        FileWriteError: If directory creation fails
-    """
-    try:
-        # Convert string to Path if needed
-        path_obj = Path(path) if isinstance(path, str) else path
-        path_obj.mkdir(parents=True, exist_ok=True)
-    except Exception as e:  # pragma: no cover
-        logger.error("Failed to create directory", path=str(path), error=str(e))
-        raise FileWriteError(f"Failed to create directory {path}: {e}")
-
-
 async def write_file_atomic(path: FilePath, content: str) -> None:
     """
     Write file with atomic operation using temporary file.
 
+    Uses aiofiles for true async I/O (non-blocking).
+
     Args:
         path: Target file path (Path or string)
         content: Content to write
@@ -87,7 +71,11 @@ async def write_file_atomic(path: FilePath, content: str) -> None:
     temp_path = path_obj.with_suffix(".tmp")
 
     try:
-        temp_path.write_text(content, encoding="utf-8")
+        # Use aiofiles for non-blocking write
+        async with aiofiles.open(temp_path, mode="w", encoding="utf-8") as f:
+            await f.write(content)
+
+        # Atomic rename (this is fast, doesn't need async)
         temp_path.replace(path_obj)
         logger.debug("Wrote file atomically", path=str(path_obj), content_length=len(content))
     except Exception as e:  # pragma: no cover
@@ -185,95 +173,49 @@ def remove_frontmatter(content: str) -> str:
     return parts[2].strip()
 
 
-async def update_frontmatter(path: FilePath, updates: Dict[str, Any]) -> str:
-    """Update frontmatter fields in a file while preserving all content.
-
-    Only modifies the frontmatter section, leaving all content untouched.
-    Creates frontmatter section if none exists.
-    Returns checksum of updated file.
-
-    Args:
-        path: Path to markdown file (Path or string)
-        updates: Dict of frontmatter fields to update
-
-    Returns:
-        Checksum of updated file
-
-    Raises:
-        FileError: If file operations fail
-        ParseError: If frontmatter parsing fails
-    """
-    try:
-        # Convert string to Path if needed
-        path_obj = Path(path) if isinstance(path, str) else path
-
-        # Read current content
-        content = path_obj.read_text(encoding="utf-8")
-
-        # Parse current frontmatter
-        current_fm = {}
-        if has_frontmatter(content):
-            current_fm = parse_frontmatter(content)
-            content = remove_frontmatter(content)
-
-        # Update frontmatter
-        new_fm = {**current_fm, **updates}
-
-        # Write new file with updated frontmatter
-        yaml_fm = yaml.dump(new_fm, sort_keys=False, allow_unicode=True)
-        final_content = f"---\n{yaml_fm}---\n\n{content.strip()}"
-
-        logger.debug("Updating frontmatter", path=str(path_obj), update_keys=list(updates.keys()))
-
-        await write_file_atomic(path_obj, final_content)
-        return await compute_checksum(final_content)
-
-    except Exception as e:  # pragma: no cover
-        logger.error(
-            "Failed to update frontmatter",
-            path=str(path) if isinstance(path, (str, Path)) else "<unknown>",
-            error=str(e),
-        )
-        raise FileError(f"Failed to update frontmatter: {e}")
-
-
 def dump_frontmatter(post: frontmatter.Post) -> str:
     """
     Serialize frontmatter.Post to markdown with Obsidian-compatible YAML format.
-    
-    This function ensures that tags are formatted as YAML lists instead of JSON arrays:
-    
+
+    This function ensures that:
+    1. Tags are formatted as YAML lists instead of JSON arrays
+    2. String values are properly quoted to handle special characters (colons, etc.)
+
     Good (Obsidian compatible):
     ---
+    title: "L2 Governance Core (Split: Core)"
     tags:
     - system
-    - overview  
+    - overview
     - reference
     ---
-    
-    Bad (current behavior):
+
+    Bad (causes parsing errors):
     ---
+    title: L2 Governance Core (Split: Core)  # Unquoted colon breaks YAML
     tags: ["system", "overview", "reference"]
     ---
-    
+
     Args:
         post: frontmatter.Post object to serialize
-        
+
     Returns:
         String containing markdown with properly formatted YAML frontmatter
-    """    
+    """
     if not post.metadata:
         # No frontmatter, just return content
         return post.content
-        
+
     # Serialize YAML with block style for lists
+    # SafeDumper automatically quotes values with special characters (colons, etc.)
     yaml_str = yaml.dump(
         post.metadata,
         sort_keys=False,
         allow_unicode=True,
-        default_flow_style=False
+        default_flow_style=False,
+        Dumper=yaml.SafeDumper,
     )
-    
+
     # Construct the final markdown with frontmatter
     if post.content:
         return f"---\n{yaml_str}---\n\n{post.content}"
@@ -298,3 +240,30 @@ def sanitize_for_filename(text: str, replacement: str = "-") -> str:
 
     return text.strip(replacement)
 
+
+def sanitize_for_folder(folder: str) -> str:
+    """
+    Sanitize folder path to be safe for use in file system paths.
+    Removes leading/trailing whitespace, compresses multiple slashes,
+    and removes special characters except for /, -, and _.
+    """
+    if not folder:
+        return ""
+
+    sanitized = folder.strip()
+
+    if sanitized.startswith("./"):
+        sanitized = sanitized[2:]
+
+    # ensure no special characters (except for a few that are allowed)
+    sanitized = "".join(
+        c for c in sanitized if c.isalnum() or c in (".", " ", "-", "_", "\\", "/")
+    ).rstrip()
+
+    # compress multiple, repeated instances of path separators
+    sanitized = re.sub(r"[\\/]+", "/", sanitized)
+
+    # trim any leading/trailing path separators
+    sanitized = sanitized.strip("\\/")
+
+    return sanitized

src/basic_memory/ignore_utils.py

@@ -0,0 +1,297 @@
+"""Utilities for handling .gitignore patterns and file filtering."""
+
+import fnmatch
+from pathlib import Path
+from typing import Set
+
+
+# Common directories and patterns to ignore by default
+# These are used as fallback if .bmignore doesn't exist
+DEFAULT_IGNORE_PATTERNS = {
+    # Hidden files (files starting with dot)
+    ".*",
+    # Basic Memory internal files
+    "*.db",
+    "*.db-shm",
+    "*.db-wal",
+    "config.json",
+    # Version control
+    ".git",
+    ".svn",
+    # Python
+    "__pycache__",
+    "*.pyc",
+    "*.pyo",
+    "*.pyd",
+    ".pytest_cache",
+    ".coverage",
+    "*.egg-info",
+    ".tox",
+    ".mypy_cache",
+    ".ruff_cache",
+    # Virtual environments
+    ".venv",
+    "venv",
+    "env",
+    ".env",
+    # Node.js
+    "node_modules",
+    # Build artifacts
+    "build",
+    "dist",
+    ".cache",
+    # IDE
+    ".idea",
+    ".vscode",
+    # OS files
+    ".DS_Store",
+    "Thumbs.db",
+    "desktop.ini",
+    # Obsidian
+    ".obsidian",
+    # Temporary files
+    "*.tmp",
+    "*.swp",
+    "*.swo",
+    "*~",
+}
+
+
+def get_bmignore_path() -> Path:
+    """Get path to .bmignore file.
+
+    Returns:
+        Path to ~/.basic-memory/.bmignore
+    """
+    return Path.home() / ".basic-memory" / ".bmignore"
+
+
+def create_default_bmignore() -> None:
+    """Create default .bmignore file if it doesn't exist.
+
+    This ensures users have a file they can customize for all Basic Memory operations.
+    """
+    bmignore_path = get_bmignore_path()
+
+    if bmignore_path.exists():
+        return
+
+    bmignore_path.parent.mkdir(parents=True, exist_ok=True)
+    bmignore_path.write_text("""# Basic Memory Ignore Patterns
+# This file is used by both 'bm cloud upload', 'bm cloud bisync', and file sync
+# Patterns use standard gitignore-style syntax
+
+# Hidden files (files starting with dot)
+.*
+
+# Basic Memory internal files (includes test databases)
+*.db
+*.db-shm
+*.db-wal
+config.json
+
+# Version control
+.git
+.svn
+
+# Python
+__pycache__
+*.pyc
+*.pyo
+*.pyd
+.pytest_cache
+.coverage
+*.egg-info
+.tox
+.mypy_cache
+.ruff_cache
+
+# Virtual environments
+.venv
+venv
+env
+.env
+
+# Node.js
+node_modules
+
+# Build artifacts
+build
+dist
+.cache
+
+# IDE
+.idea
+.vscode
+
+# OS files
+.DS_Store
+Thumbs.db
+desktop.ini
+
+# Obsidian
+.obsidian
+
+# Temporary files
+*.tmp
+*.swp
+*.swo
+*~
+""")
+
+
+def load_bmignore_patterns() -> Set[str]:
+    """Load patterns from .bmignore file.
+
+    Returns:
+        Set of patterns from .bmignore, or DEFAULT_IGNORE_PATTERNS if file doesn't exist
+    """
+    bmignore_path = get_bmignore_path()
+
+    # Create default file if it doesn't exist
+    if not bmignore_path.exists():
+        create_default_bmignore()
+
+    patterns = set()
+
+    try:
+        with bmignore_path.open("r", encoding="utf-8") as f:
+            for line in f:
+                line = line.strip()
+                # Skip empty lines and comments
+                if line and not line.startswith("#"):
+                    patterns.add(line)
+    except Exception:
+        # If we can't read .bmignore, fall back to defaults
+        return set(DEFAULT_IGNORE_PATTERNS)
+
+    # If no patterns were loaded, use defaults
+    if not patterns:
+        return set(DEFAULT_IGNORE_PATTERNS)
+
+    return patterns
+
+
+def load_gitignore_patterns(base_path: Path, use_gitignore: bool = True) -> Set[str]:
+    """Load gitignore patterns from .gitignore file and .bmignore.
+
+    Combines patterns from:
+    1. ~/.basic-memory/.bmignore (user's global ignore patterns)
+    2. {base_path}/.gitignore (project-specific patterns, if use_gitignore=True)
+
+    Args:
+        base_path: The base directory to search for .gitignore file
+        use_gitignore: If False, only load patterns from .bmignore (default: True)
+
+    Returns:
+        Set of patterns to ignore
+    """
+    # Start with patterns from .bmignore
+    patterns = load_bmignore_patterns()
+
+    if use_gitignore:
+        gitignore_file = base_path / ".gitignore"
+        if gitignore_file.exists():
+            try:
+                with gitignore_file.open("r", encoding="utf-8") as f:
+                    for line in f:
+                        line = line.strip()
+                        # Skip empty lines and comments
+                        if line and not line.startswith("#"):
+                            patterns.add(line)
+            except Exception:
+                # If we can't read .gitignore, just use default patterns
+                pass
+
+    return patterns
+
+
+def should_ignore_path(file_path: Path, base_path: Path, ignore_patterns: Set[str]) -> bool:
+    """Check if a file path should be ignored based on gitignore patterns.
+
+    Args:
+        file_path: The file path to check
+        base_path: The base directory for relative path calculation
+        ignore_patterns: Set of patterns to match against
+
+    Returns:
+        True if the path should be ignored, False otherwise
+    """
+    # Get the relative path from base
+    try:
+        relative_path = file_path.relative_to(base_path)
+        relative_str = str(relative_path)
+        relative_posix = relative_path.as_posix()  # Use forward slashes for matching
+
+        # Check each pattern
+        for pattern in ignore_patterns:
+            # Handle patterns starting with / (root relative)
+            if pattern.startswith("/"):
+                root_pattern = pattern[1:]  # Remove leading /
+
+                # For directory patterns ending with /
+                if root_pattern.endswith("/"):
+                    dir_name = root_pattern[:-1]  # Remove trailing /
+                    # Check if the first part of the path matches the directory name
+                    if len(relative_path.parts) > 0 and relative_path.parts[0] == dir_name:
+                        return True
+                else:
+                    # Regular root-relative pattern
+                    if fnmatch.fnmatch(relative_posix, root_pattern):
+                        return True
+                continue
+
+            # Handle directory patterns (ending with /)
+            if pattern.endswith("/"):
+                dir_name = pattern[:-1]  # Remove trailing /
+                # Check if any path part matches the directory name
+                if dir_name in relative_path.parts:
+                    return True
+                continue
+
+            # Direct name match (e.g., ".git", "node_modules")
+            if pattern in relative_path.parts:
+                return True
+
+            # Check if any individual path part matches the glob pattern
+            # This handles cases like ".*" matching ".hidden.md" in "concept/.hidden.md"
+            for part in relative_path.parts:
+                if fnmatch.fnmatch(part, pattern):
+                    return True
+
+            # Glob pattern match on full path
+            if fnmatch.fnmatch(relative_posix, pattern) or fnmatch.fnmatch(relative_str, pattern):
+                return True
+
+        return False
+    except ValueError:
+        # If we can't get relative path, don't ignore
+        return False
+
+
+def filter_files(
+    files: list[Path], base_path: Path, ignore_patterns: Set[str] | None = None
+) -> tuple[list[Path], int]:
+    """Filter a list of files based on gitignore patterns.
+
+    Args:
+        files: List of file paths to filter
+        base_path: The base directory for relative path calculation
+        ignore_patterns: Set of patterns to ignore. If None, loads from .gitignore
+
+    Returns:
+        Tuple of (filtered_files, ignored_count)
+    """
+    if ignore_patterns is None:
+        ignore_patterns = load_gitignore_patterns(base_path)
+
+    filtered_files = []
+    ignored_count = 0
+
+    for file_path in files:
+        if should_ignore_path(file_path, base_path, ignore_patterns):
+            ignored_count += 1
+        else:
+            filtered_files.append(file_path)
+
+    return filtered_files, ignored_count

src/basic_memory/importers/claude_conversations_importer.py

@@ -153,7 +153,12 @@ class ClaudeConversationsImporter(Importer[ChatImportResult]):
             # Handle message content
             content = msg.get("text", "")
             if msg.get("content"):
-                content = " ".join(c.get("text", "") for c in msg["content"])
+                # Filter out None values before joining
+                content = " ".join(
+                    str(c.get("text", ""))
+                    for c in msg["content"]
+                    if c and c.get("text") is not None
+                )
             lines.append(content)
 
             # Handle attachments

src/basic_memory/markdown/entity_parser.py

@@ -4,12 +4,14 @@ Uses markdown-it with plugins to parse structured data from markdown content.
 """
 
 from dataclasses import dataclass, field
-from datetime import datetime
+from datetime import date, datetime
 from pathlib import Path
 from typing import Any, Optional
 
 import dateparser
 import frontmatter
+import yaml
+from loguru import logger
 from markdown_it import MarkdownIt
 
 from basic_memory.markdown.plugins import observation_plugin, relation_plugin
@@ -24,6 +26,82 @@ from basic_memory.utils import parse_tags
 md = MarkdownIt().use(observation_plugin).use(relation_plugin)
 
 
+def normalize_frontmatter_value(value: Any) -> Any:
+    """Normalize frontmatter values to safe types for processing.
+
+    PyYAML automatically converts various string-like values into native Python types:
+    - Date strings ("2025-10-24") → datetime.date objects
+    - Numbers ("1.0") → int or float
+    - Booleans ("true") → bool
+    - Lists → list objects
+
+    This can cause AttributeError when code expects strings and calls string methods
+    like .strip() on these values (see GitHub issue #236).
+
+    This function normalizes all frontmatter values to safe types:
+    - Dates/datetimes → ISO format strings
+    - Numbers (int/float) → strings
+    - Booleans → strings ("True"/"False")
+    - Lists → preserved as lists, but items are recursively normalized
+    - Dicts → preserved as dicts, but values are recursively normalized
+    - Strings → kept as-is
+    - None → kept as None
+
+    Args:
+        value: The frontmatter value to normalize
+
+    Returns:
+        The normalized value safe for string operations
+
+    Example:
+        >>> normalize_frontmatter_value(datetime.date(2025, 10, 24))
+        '2025-10-24'
+        >>> normalize_frontmatter_value([datetime.date(2025, 10, 24), "tag", 123])
+        ['2025-10-24', 'tag', '123']
+        >>> normalize_frontmatter_value(True)
+        'True'
+    """
+    # Convert date/datetime objects to ISO format strings
+    if isinstance(value, datetime):
+        return value.isoformat()
+    if isinstance(value, date):
+        return value.isoformat()
+
+    # Convert boolean to string (must come before int check since bool is subclass of int)
+    if isinstance(value, bool):
+        return str(value)
+
+    # Convert numbers to strings
+    if isinstance(value, (int, float)):
+        return str(value)
+
+    # Recursively process lists (preserve as list, normalize items)
+    if isinstance(value, list):
+        return [normalize_frontmatter_value(item) for item in value]
+
+    # Recursively process dicts (preserve as dict, normalize values)
+    if isinstance(value, dict):
+        return {key: normalize_frontmatter_value(val) for key, val in value.items()}
+
+    # Keep strings and None as-is
+    return value
+
+
+def normalize_frontmatter_metadata(metadata: dict) -> dict:
+    """Normalize all values in frontmatter metadata dict.
+
+    Converts date/datetime objects to ISO format strings to prevent
+    AttributeError when code expects strings (GitHub issue #236).
+
+    Args:
+        metadata: The frontmatter metadata dictionary
+
+    Returns:
+        A new dictionary with all values normalized
+    """
+    return {key: normalize_frontmatter_value(value) for key, value in metadata.items()}
+
+
 @dataclass
 class EntityContent:
     content: str
@@ -111,18 +189,45 @@ class EntityParser:
         return self.base_path / path
 
     async def parse_file_content(self, absolute_path, file_content):
-        post = frontmatter.loads(file_content)
+        # Parse frontmatter with proper error handling for malformed YAML (issue #185)
+        try:
+            post = frontmatter.loads(file_content)
+        except yaml.YAMLError as e:
+            # Log the YAML parsing error with file context
+            logger.warning(
+                f"Failed to parse YAML frontmatter in {absolute_path}: {e}. "
+                f"Treating file as plain markdown without frontmatter."
+            )
+            # Create a post with no frontmatter - treat entire content as markdown
+            post = frontmatter.Post(file_content, metadata={})
+
         # Extract file stat info
         file_stats = absolute_path.stat()
-        metadata = post.metadata
-        metadata["title"] = post.metadata.get("title", absolute_path.stem)
-        metadata["type"] = post.metadata.get("type", "note")
-        tags = parse_tags(post.metadata.get("tags", []))  # pyright: ignore
+
+        # Normalize frontmatter values to prevent AttributeError on date objects (issue #236)
+        # PyYAML automatically converts date strings like "2025-10-24" to datetime.date objects
+        # This normalization converts them back to ISO format strings to ensure compatibility
+        # with code that expects string values
+        metadata = normalize_frontmatter_metadata(post.metadata)
+
+        # Ensure required fields have defaults (issue #184, #387)
+        # Handle title - use default if missing, None/null, empty, or string "None"
+        title = metadata.get("title")
+        if not title or title == "None":
+            metadata["title"] = absolute_path.stem
+        else:
+            metadata["title"] = title
+        # Handle type - use default if missing OR explicitly set to None/null
+        entity_type = metadata.get("type")
+        metadata["type"] = entity_type if entity_type is not None else "note"
+
+        tags = parse_tags(metadata.get("tags", []))  # pyright: ignore
         if tags:
             metadata["tags"] = tags
-        # frontmatter
+
+        # frontmatter - use metadata with defaults applied
         entity_frontmatter = EntityFrontmatter(
-            metadata=post.metadata,
+            metadata=metadata,
         )
         entity_content = parse(post.content)
         return EntityMarkdown(

src/basic_memory/markdown/plugins.py

@@ -9,6 +9,7 @@ from markdown_it.token import Token
 def is_observation(token: Token) -> bool:
     """Check if token looks like our observation format."""
     import re
+
     if token.type != "inline":  # pragma: no cover
         return False
     # Use token.tag which contains the actual content for test tokens, fallback to content
@@ -18,15 +19,15 @@ def is_observation(token: Token) -> bool:
     # if it's a markdown_task, return false
     if content.startswith("[ ]") or content.startswith("[x]") or content.startswith("[-]"):
         return False
-    
+
     # Exclude markdown links: [text](url)
     if re.match(r"^\[.*?\]\(.*?\)$", content):
         return False
-    
+
     # Exclude wiki links: [[text]]
     if re.match(r"^\[\[.*?\]\]$", content):
         return False
-    
+
     # Check for proper observation format: [category] content
     match = re.match(r"^\[([^\[\]()]+)\]\s+(.+)", content)
     has_tags = "#" in content
@@ -36,9 +37,10 @@ def is_observation(token: Token) -> bool:
 def parse_observation(token: Token) -> Dict[str, Any]:
     """Extract observation parts from token."""
     import re
+
     # Use token.tag which contains the actual content for test tokens, fallback to content
     content = (token.tag or token.content).strip()
-    
+
     # Parse [category] with regex
     match = re.match(r"^\[([^\[\]()]+)\]\s+(.+)", content)
     category = None
@@ -50,7 +52,7 @@ def parse_observation(token: Token) -> Dict[str, Any]:
         empty_match = re.match(r"^\[\]\s+(.+)", content)
         if empty_match:
             content = empty_match.group(1).strip()
-    
+
     # Parse (context)
     context = None
     if content.endswith(")"):
@@ -58,7 +60,7 @@ def parse_observation(token: Token) -> Dict[str, Any]:
         if start != -1:
             context = content[start + 1 : -1].strip()
             content = content[:start].strip()
-    
+
     # Extract tags and keep original content
     tags = []
     parts = content.split()
@@ -69,7 +71,7 @@ def parse_observation(token: Token) -> Dict[str, Any]:
                 tags.extend(subtags)
             else:
                 tags.append(part[1:])
-    
+
     return {
         "category": category,
         "content": content,

src/basic_memory/mcp/async_client.py

@@ -1,28 +1,138 @@
-from httpx import ASGITransport, AsyncClient
+from contextlib import asynccontextmanager, AbstractAsyncContextManager
+from typing import AsyncIterator, Callable, Optional
+
+from httpx import ASGITransport, AsyncClient, Timeout
 from loguru import logger
 
 from basic_memory.api.app import app as fastapi_app
 from basic_memory.config import ConfigManager
 
 
+# Optional factory override for dependency injection
+_client_factory: Optional[Callable[[], AbstractAsyncContextManager[AsyncClient]]] = None
+
+
+def set_client_factory(factory: Callable[[], AbstractAsyncContextManager[AsyncClient]]) -> None:
+    """Override the default client factory (for cloud app, testing, etc).
+
+    Args:
+        factory: An async context manager that yields an AsyncClient
+
+    Example:
+        @asynccontextmanager
+        async def custom_client_factory():
+            async with AsyncClient(...) as client:
+                yield client
+
+        set_client_factory(custom_client_factory)
+    """
+    global _client_factory
+    _client_factory = factory
+
+
+@asynccontextmanager
+async def get_client() -> AsyncIterator[AsyncClient]:
+    """Get an AsyncClient as a context manager.
+
+    This function provides proper resource management for HTTP clients,
+    ensuring connections are closed after use. It supports three modes:
+
+    1. **Factory injection** (cloud app, tests):
+       If a custom factory is set via set_client_factory(), use that.
+
+    2. **CLI cloud mode**:
+       When cloud_mode_enabled is True, create HTTP client with auth
+       token from CLIAuth for requests to cloud proxy endpoint.
+
+    3. **Local mode** (default):
+       Use ASGI transport for in-process requests to local FastAPI app.
+
+    Usage:
+        async with get_client() as client:
+            response = await client.get("/path")
+
+    Yields:
+        AsyncClient: Configured HTTP client for the current mode
+
+    Raises:
+        RuntimeError: If cloud mode is enabled but user is not authenticated
+    """
+    if _client_factory:
+        # Use injected factory (cloud app, tests)
+        async with _client_factory() as client:
+            yield client
+    else:
+        # Default: create based on config
+        config = ConfigManager().config
+        timeout = Timeout(
+            connect=10.0,  # 10 seconds for connection
+            read=30.0,  # 30 seconds for reading response
+            write=30.0,  # 30 seconds for writing request
+            pool=30.0,  # 30 seconds for connection pool
+        )
+
+        if config.cloud_mode_enabled:
+            # CLI cloud mode: inject auth when creating client
+            from basic_memory.cli.auth import CLIAuth
+
+            auth = CLIAuth(client_id=config.cloud_client_id, authkit_domain=config.cloud_domain)
+            token = await auth.get_valid_token()
+
+            if not token:
+                raise RuntimeError(
+                    "Cloud mode enabled but not authenticated. "
+                    "Run 'basic-memory cloud login' first."
+                )
+
+            # Auth header set ONCE at client creation
+            proxy_base_url = f"{config.cloud_host}/proxy"
+            logger.info(f"Creating HTTP client for cloud proxy at: {proxy_base_url}")
+            async with AsyncClient(
+                base_url=proxy_base_url,
+                headers={"Authorization": f"Bearer {token}"},
+                timeout=timeout,
+            ) as client:
+                yield client
+        else:
+            # Local mode: ASGI transport for in-process calls
+            logger.info("Creating ASGI client for local Basic Memory API")
+            async with AsyncClient(
+                transport=ASGITransport(app=fastapi_app), base_url="http://test", timeout=timeout
+            ) as client:
+                yield client
+
+
 def create_client() -> AsyncClient:
     """Create an HTTP client based on configuration.
 
+    DEPRECATED: Use get_client() context manager instead for proper resource management.
+
+    This function is kept for backward compatibility but will be removed in a future version.
+    The returned client should be closed manually by calling await client.aclose().
+
     Returns:
-        AsyncClient configured for either local ASGI or remote HTTP transport
+        AsyncClient configured for either local ASGI or remote proxy
     """
     config_manager = ConfigManager()
-    config = config_manager.load_config()
+    config = config_manager.config
 
-    if config.api_url:
-        # Use HTTP transport for remote API
-        logger.info(f"Creating HTTP client for remote Basic Memory API: {config.api_url}")
-        return AsyncClient(base_url=config.api_url)
+    # Configure timeout for longer operations like write_note
+    # Default httpx timeout is 5 seconds which is too short for file operations
+    timeout = Timeout(
+        connect=10.0,  # 10 seconds for connection
+        read=30.0,  # 30 seconds for reading response
+        write=30.0,  # 30 seconds for writing request
+        pool=30.0,  # 30 seconds for connection pool
+    )
+
+    if config.cloud_mode_enabled:
+        # Use HTTP transport to proxy endpoint
+        proxy_base_url = f"{config.cloud_host}/proxy"
+        logger.info(f"Creating HTTP client for proxy at: {proxy_base_url}")
+        return AsyncClient(base_url=proxy_base_url, timeout=timeout)
     else:
-        # Use ASGI transport for local API
-        logger.debug("Creating ASGI client for local Basic Memory API")
-        return AsyncClient(transport=ASGITransport(app=fastapi_app), base_url="http://test")
-
-
-# Create shared async client
-client = create_client()
+        # Default: use ASGI transport for local API (development mode)
+        logger.info("Creating ASGI client for local Basic Memory API")
+        return AsyncClient(
+            transport=ASGITransport(app=fastapi_app), base_url="http://test", timeout=timeout
+        )

src/basic_memory/mcp/project_context.py

@@ -0,0 +1,141 @@
+"""Project context utilities for Basic Memory MCP server.
+
+Provides project lookup utilities for MCP tools.
+Handles project validation and context management in one place.
+"""
+
+import os
+from typing import Optional, List
+from httpx import AsyncClient
+from httpx._types import (
+    HeaderTypes,
+)
+from loguru import logger
+from fastmcp import Context
+
+from basic_memory.config import ConfigManager
+from basic_memory.mcp.tools.utils import call_get
+from basic_memory.schemas.project_info import ProjectItem, ProjectList
+from basic_memory.utils import generate_permalink
+
+
+async def resolve_project_parameter(project: Optional[str] = None) -> Optional[str]:
+    """Resolve project parameter using three-tier hierarchy.
+
+    if config.cloud_mode:
+        project is required
+    else:
+        Resolution order:
+        1. Single Project Mode  (--project cli arg, or BASIC_MEMORY_MCP_PROJECT env var) - highest priority
+        2. Explicit project parameter - medium priority
+        3. Default project if default_project_mode=true - lowest priority
+
+    Args:
+        project: Optional explicit project parameter
+
+    Returns:
+        Resolved project name or None if no resolution possible
+    """
+
+    config = ConfigManager().config
+    # if cloud_mode, project is required
+    if config.cloud_mode:
+        if project:
+            logger.debug(f"project: {project}, cloud_mode: {config.cloud_mode}")
+            return project
+        else:
+            raise ValueError("No project specified. Project is required for cloud mode.")
+
+    # Priority 1: CLI constraint overrides everything (--project arg sets env var)
+    constrained_project = os.environ.get("BASIC_MEMORY_MCP_PROJECT")
+    if constrained_project:
+        logger.debug(f"Using CLI constrained project: {constrained_project}")
+        return constrained_project
+
+    # Priority 2: Explicit project parameter
+    if project:
+        logger.debug(f"Using explicit project parameter: {project}")
+        return project
+
+    # Priority 3: Default project mode
+    if config.default_project_mode:
+        logger.debug(f"Using default project from config: {config.default_project}")
+        return config.default_project
+
+    # No resolution possible
+    return None
+
+
+async def get_project_names(client: AsyncClient, headers: HeaderTypes | None = None) -> List[str]:
+    response = await call_get(client, "/projects/projects", headers=headers)
+    project_list = ProjectList.model_validate(response.json())
+    return [project.name for project in project_list.projects]
+
+
+async def get_active_project(
+    client: AsyncClient,
+    project: Optional[str] = None,
+    context: Optional[Context] = None,
+    headers: HeaderTypes | None = None,
+) -> ProjectItem:
+    """Get and validate project, setting it in context if available.
+
+    Args:
+        client: HTTP client for API calls
+        project: Optional project name (resolved using hierarchy)
+        context: Optional FastMCP context to cache the result
+
+    Returns:
+        The validated project item
+
+    Raises:
+        ValueError: If no project can be resolved
+        HTTPError: If project doesn't exist or is inaccessible
+    """
+    resolved_project = await resolve_project_parameter(project)
+    if not resolved_project:
+        project_names = await get_project_names(client, headers)
+        raise ValueError(
+            "No project specified. "
+            "Either set 'default_project_mode=true' in config, or use 'project' argument.\n"
+            f"Available projects: {project_names}"
+        )
+
+    project = resolved_project
+
+    # Check if already cached in context
+    if context:
+        cached_project = context.get_state("active_project")
+        if cached_project and cached_project.name == project:
+            logger.debug(f"Using cached project from context: {project}")
+            return cached_project
+
+    # Validate project exists by calling API
+    logger.debug(f"Validating project: {project}")
+    permalink = generate_permalink(project)
+    response = await call_get(client, f"/{permalink}/project/item", headers=headers)
+    active_project = ProjectItem.model_validate(response.json())
+
+    # Cache in context if available
+    if context:
+        context.set_state("active_project", active_project)
+        logger.debug(f"Cached project in context: {project}")
+
+    logger.debug(f"Validated project: {active_project.name}")
+    return active_project
+
+
+def add_project_metadata(result: str, project_name: str) -> str:
+    """Add project context as metadata footer for assistant session tracking.
+
+    Provides clear project context to help the assistant remember which
+    project is being used throughout the conversation session.
+
+    Args:
+        result: The tool result string
+        project_name: The project name that was used
+
+    Returns:
+        Result with project session tracking metadata
+    """
+    return f"{result}\n\n[Session: Using project '{project_name}']"

src/basic_memory/mcp/project_session.py

@@ -1,120 +0,0 @@
-"""Project session management for Basic Memory MCP server.
-
-Provides simple in-memory project context for MCP tools, allowing users to switch
-between projects during a conversation without restarting the server.
-"""
-
-from dataclasses import dataclass
-from typing import Optional
-from loguru import logger
-
-from basic_memory.config import ProjectConfig, get_project_config, ConfigManager
-
-
-@dataclass
-class ProjectSession:
-    """Simple in-memory project context for MCP session.
-
-    This class manages the current project context that tools use when no explicit
-    project is specified. It's initialized with the default project from config
-    and can be changed during the conversation.
-    """
-
-    current_project: Optional[str] = None
-    default_project: Optional[str] = None
-
-    def initialize(self, default_project: str) -> "ProjectSession":
-        """Set the default project from config on startup.
-
-        Args:
-            default_project: The project name from configuration
-        """
-        self.default_project = default_project
-        self.current_project = default_project
-        logger.info(f"Initialized project session with default project: {default_project}")
-        return self
-
-    def get_current_project(self) -> str:
-        """Get the currently active project name.
-
-        Returns:
-            The current project name, falling back to default, then 'main'
-        """
-        return self.current_project or self.default_project or "main"
-
-    def set_current_project(self, project_name: str) -> None:
-        """Set the current project context.
-
-        Args:
-            project_name: The project to switch to
-        """
-        previous = self.current_project
-        self.current_project = project_name
-        logger.info(f"Switched project context: {previous} -> {project_name}")
-
-    def get_default_project(self) -> str:
-        """Get the default project name from startup.
-
-        Returns:
-            The default project name, or 'main' if not set
-        """
-        return self.default_project or "main"  # pragma: no cover
-
-    def reset_to_default(self) -> None:  # pragma: no cover
-        """Reset current project back to the default project."""
-        self.current_project = self.default_project  # pragma: no cover
-        logger.info(f"Reset project context to default: {self.default_project}")  # pragma: no cover
-
-    def refresh_from_config(self) -> None:
-        """Refresh session state from current configuration.
-
-        This method reloads the default project from config and reinitializes
-        the session. This should be called when the default project is changed
-        via CLI or API to ensure MCP session stays in sync.
-        """
-        # Reload config to get latest default project
-        current_config = ConfigManager().config
-        new_default = current_config.default_project
-
-        # Reinitialize with new default
-        self.initialize(new_default)
-        logger.info(f"Refreshed project session from config, new default: {new_default}")
-
-
-# Global session instance
-session = ProjectSession()
-
-
-def get_active_project(project_override: Optional[str] = None) -> ProjectConfig:
-    """Get the active project name for a tool call.
-
-    This is the main function tools should use to determine which project
-    to operate on.
-
-    Args:
-        project_override: Optional explicit project name from tool parameter
-
-    Returns:
-        The project name to use (override takes precedence over session context)
-    """
-    if project_override:  # pragma: no cover
-        project = get_project_config(project_override)
-        session.set_current_project(project_override)
-        return project
-
-    current_project = session.get_current_project()
-    active_project = get_project_config(current_project)
-    return active_project
-
-
-def add_project_metadata(result: str, project_name: str) -> str:
-    """Add project context as metadata footer for LLM awareness.
-
-    Args:
-        result: The tool result string
-        project_name: The project name that was used
-
-    Returns:
-        Result with project metadata footer
-    """
-    return f"{result}\n\n<!-- Project: {project_name} -->"  # pragma: no cover

src/basic_memory/mcp/prompts/ai_assistant_guide.py

@@ -1,5 +1,6 @@
 from pathlib import Path
 
+from basic_memory.config import ConfigManager
 from basic_memory.mcp.server import mcp
 from loguru import logger
 
@@ -12,14 +13,58 @@ from loguru import logger
 def ai_assistant_guide() -> str:
     """Return a concise guide on Basic Memory tools and how to use them.
 
-    Args:
-        focus: Optional area to focus on ("writing", "context", "search", etc.)
+    Dynamically adapts instructions based on configuration:
+    - Default project mode: Simplified instructions with automatic project
+    - Regular mode: Project discovery and selection guidance
+    - CLI constraint mode: Single project constraint information
 
     Returns:
         A focused guide on Basic Memory usage.
     """
     logger.info("Loading AI assistant guide resource")
+
+    # Load base guide content
     guide_doc = Path(__file__).parent.parent / "resources" / "ai_assistant_guide.md"
     content = guide_doc.read_text(encoding="utf-8")
-    logger.info(f"Loaded AI assistant guide ({len(content)} chars)")
-    return content
+
+    # Check configuration for mode-specific instructions
+    config = ConfigManager().config
+
+    # Add mode-specific header
+    mode_info = ""
+    if config.default_project_mode:
+        mode_info = f"""
+# 🎯 Default Project Mode Active
+
+**Current Configuration**: All operations automatically use project '{config.default_project}'
+
+**Simplified Usage**: You don't need to specify the project parameter in tool calls.
+- `write_note(title="Note", content="...", folder="docs")` ✅
+- Project parameter is optional and will default to '{config.default_project}'
+- To use a different project, explicitly specify: `project="other-project"`
+
+────────────────────────────────────────
+
+"""
+    else:
+        mode_info = """
+# 🔧 Multi-Project Mode Active
+
+**Current Configuration**: Project parameter required for all operations
+
+**Project Discovery Required**: Use these tools to select a project:
+- `list_memory_projects()` - See all available projects
+- `recent_activity()` - Get project activity and recommendations
+- Remember the user's project choice throughout the conversation
+
+────────────────────────────────────────
+
+"""
+
+    # Prepend mode info to the guide
+    enhanced_content = mode_info + content
+
+    logger.info(
+        f"Loaded AI assistant guide ({len(enhanced_content)} chars) with mode: {'default_project' if config.default_project_mode else 'multi_project'}"
+    )
+    return enhanced_content

src/basic_memory/mcp/prompts/continue_conversation.py

@@ -10,7 +10,7 @@ from loguru import logger
 from pydantic import Field
 
 from basic_memory.config import get_project_config
-from basic_memory.mcp.async_client import client
+from basic_memory.mcp.async_client import get_client
 from basic_memory.mcp.server import mcp
 from basic_memory.mcp.tools.utils import call_post
 from basic_memory.schemas.base import TimeFrame
@@ -18,7 +18,7 @@ from basic_memory.schemas.prompt import ContinueConversationRequest
 
 
 @mcp.prompt(
-    name="Continue Conversation",
+    name="continue_conversation",
     description="Continue a previous conversation",
 )
 async def continue_conversation(
@@ -42,20 +42,21 @@ async def continue_conversation(
     """
     logger.info(f"Continuing session, topic: {topic}, timeframe: {timeframe}")
 
-    # Create request model
-    request = ContinueConversationRequest(  # pyright: ignore [reportCallIssue]
-        topic=topic, timeframe=timeframe
-    )
+    async with get_client() as client:
+        # Create request model
+        request = ContinueConversationRequest(  # pyright: ignore [reportCallIssue]
+            topic=topic, timeframe=timeframe
+        )
 
-    project_url = get_project_config().project_url
+        project_url = get_project_config().project_url
 
-    # Call the prompt API endpoint
-    response = await call_post(
-        client,
-        f"{project_url}/prompt/continue-conversation",
-        json=request.model_dump(exclude_none=True),
-    )
+        # Call the prompt API endpoint
+        response = await call_post(
+            client,
+            f"{project_url}/prompt/continue-conversation",
+            json=request.model_dump(exclude_none=True),
+        )
 
-    # Extract the rendered prompt from the response
-    result = response.json()
-    return result["prompt"]
+        # Extract the rendered prompt from the response
+        result = response.json()
+        return result["prompt"]