chore: update version to 0.14.4 for v0.14.4 release

fix: resolve linting errors for release preparation
- Replace bare except clauses with Exception in legal_file_inventory.py - Remove unused variables in test files - Prepare codebase for v0.14.4 release
2026-06-21 13:47:35 +00:00 · 2025-09-04 14:03:09 -06:00 · 2025-09-04 14:01:06 -06:00 · 2025-09-04 09:57:45 -05:00 · 2025-08-29 10:57:13 -06:00 · 2025-08-28 22:15:14 -05:00
296 changed files with 66217 additions and 6104 deletions
@@ -0,0 +1,95 @@
+# /beta - Create Beta Release
+
+Create a new beta release using the automated justfile target with quality checks and tagging.
+
+## Usage
+```
+/beta <version>
+```
+
+**Parameters:**
+- `version` (required): Beta version like `v0.13.2b1` or `v0.13.2rc1`
+
+## Implementation
+
+You are an expert release manager for the Basic Memory project. When the user runs `/beta`, execute the following steps:
+
+### Step 1: Pre-flight Validation
+1. Verify version format matches `v\d+\.\d+\.\d+(b\d+|rc\d+)` pattern
+2. Check current git status for uncommitted changes
+3. Verify we're on the `main` branch
+4. Confirm no existing tag with this version
+
+### Step 2: Use Justfile Automation
+Execute the automated beta release process:
+```bash
+just beta <version>
+```
+
+The justfile target handles:
+- ✅ Beta version format validation (supports b1, b2, rc1, etc.)
+- ✅ Git status and branch checks
+- ✅ Quality checks (`just check` - lint, format, type-check, tests)
+- ✅ Version update in `src/basic_memory/__init__.py`
+- ✅ Automatic commit with proper message
+- ✅ Tag creation and pushing to GitHub
+- ✅ Beta release workflow trigger
+
+### Step 3: Monitor Beta Release
+1. Check GitHub Actions workflow starts successfully
+2. Monitor workflow at: https://github.com/basicmachines-co/basic-memory/actions
+3. Verify PyPI pre-release publication
+4. Test beta installation: `uv tool install basic-memory --pre`
+
+### Step 4: Beta Testing Instructions
+Provide users with beta testing instructions:
+
+```bash
+# Install/upgrade to beta
+uv tool install basic-memory --pre
+
+# Or upgrade existing installation
+uv tool upgrade basic-memory --prerelease=allow
+```
+
+## Version Guidelines
+- **First beta**: `v0.13.2b1` 
+- **Subsequent betas**: `v0.13.2b2`, `v0.13.2b3`, etc.
+- **Release candidates**: `v0.13.2rc1`, `v0.13.2rc2`, etc.
+- **Final release**: `v0.13.2` (use `/release` command)
+
+## Error Handling
+- If `just beta` fails, examine the error output for specific issues
+- If quality checks fail, fix issues and retry
+- If version format is invalid, correct and retry
+- If tag already exists, increment version number
+
+## Success Output
+```
+✅ Beta Release v0.13.2b1 Created Successfully!
+
+🏷️  Tag: v0.13.2b1
+🚀 GitHub Actions: Running
+📦 PyPI: Will be available in ~5 minutes as pre-release
+
+Install/test with:
+uv tool install basic-memory --pre
+
+Monitor release: https://github.com/basicmachines-co/basic-memory/actions
+```
+
+## Beta Testing Workflow
+1. **Create beta**: Use `/beta v0.13.2b1`
+2. **Test features**: Install and validate new functionality
+3. **Fix issues**: Address bugs found during testing
+4. **Iterate**: Create `v0.13.2b2` if needed
+5. **Release candidate**: Create `v0.13.2rc1` when stable
+6. **Final release**: Use `/release v0.13.2` when ready
+
+## Context
+- Beta releases are pre-releases for testing new features
+- Automatically published to PyPI with pre-release flag
+- Uses the automated justfile target for consistency
+- Version is automatically updated in `__init__.py`
+- Ideal for validating changes before stable release
+- Supports both beta (b1, b2) and release candidate (rc1, rc2) versions
@@ -0,0 +1,160 @@
+# /changelog - Generate or Update Changelog Entry
+
+Analyze commits and generate formatted changelog entry for a version.
+
+## Usage
+```
+/changelog <version> [type]
+```
+
+**Parameters:**
+- `version` (required): Version like `v0.14.0` or `v0.14.0b1`
+- `type` (optional): `beta`, `rc`, or `stable` (default: `stable`)
+
+## Implementation
+
+You are an expert technical writer for the Basic Memory project. When the user runs `/changelog`, execute the following steps:
+
+### Step 1: Version Analysis
+1. **Determine Commit Range**
+   ```bash
+   # Find last release tag
+   git tag -l "v*" --sort=-version:refname | grep -v "b\|rc" | head -1
+   
+   # Get commits since last release
+   git log --oneline ${last_tag}..HEAD
+   ```
+
+2. **Parse Conventional Commits**
+   - Extract feat: (features)
+   - Extract fix: (bug fixes)  
+   - Extract BREAKING CHANGE: (breaking changes)
+   - Extract chore:, docs:, test: (other improvements)
+
+### Step 2: Categorize Changes
+1. **Features (feat:)**
+   - New MCP tools
+   - New CLI commands
+   - New API endpoints
+   - Major functionality additions
+
+2. **Bug Fixes (fix:)**
+   - User-facing bug fixes
+   - Critical issues resolved
+   - Performance improvements
+   - Security fixes
+
+3. **Technical Improvements**
+   - Test coverage improvements
+   - Code quality enhancements
+   - Dependency updates
+   - Documentation updates
+
+4. **Breaking Changes**
+   - API changes
+   - Configuration changes
+   - Behavior changes
+   - Migration requirements
+
+### Step 3: Generate Changelog Entry
+Create formatted entry following existing CHANGELOG.md style:
+
+Example:
+```markdown
+## <version> (<date>)
+
+### Features
+
+- **Multi-Project Management System** - Switch between projects instantly during conversations
+  ([`993e88a`](https://github.com/basicmachines-co/basic-memory/commit/993e88a)) 
+  - Instant project switching with session context
+  - Project-specific operations and isolation
+  - Project discovery and management tools
+
+- **Advanced Note Editing** - Incremental editing with append, prepend, find/replace, and section operations
+  ([`6fc3904`](https://github.com/basicmachines-co/basic-memory/commit/6fc3904))
+  - `edit_note` tool with multiple operation types
+  - Smart frontmatter-aware editing
+  - Validation and error handling
+
+### Bug Fixes
+
+- **#118**: Fix YAML tag formatting to follow standard specification
+  ([`2dc7e27`](https://github.com/basicmachines-co/basic-memory/commit/2dc7e27))
+
+- **#110**: Make --project flag work consistently across CLI commands
+  ([`02dd91a`](https://github.com/basicmachines-co/basic-memory/commit/02dd91a))
+
+### Technical Improvements
+
+- **Comprehensive Testing** - 100% test coverage with integration testing
+  ([`468a22f`](https://github.com/basicmachines-co/basic-memory/commit/468a22f))
+  - MCP integration test suite
+  - End-to-end testing framework
+  - Performance and edge case validation
+
+### Breaking Changes
+
+- **Database Migration**: Automatic migration from per-project to unified database. 
+    Data will be re-index from the filesystem, resulting in no data loss. 
+- **Configuration Changes**: Projects now synced between config.json and database
+- **Full Backward Compatibility**: All existing setups continue to work seamlessly
+```
+
+### Step 4: Integration
+1. **Update CHANGELOG.md**
+   - Insert new entry at top
+   - Maintain consistent formatting
+   - Include commit links and issue references
+
+2. **Validation**
+   - Check all major changes are captured
+   - Verify commit links work
+   - Ensure issue numbers are correct
+
+## Smart Analysis Features
+
+### Automatic Classification
+- Detect feature additions from file changes
+- Identify bug fixes from commit messages
+- Find breaking changes from code analysis
+- Extract issue numbers from commit messages
+
+### Content Enhancement
+- Add context for technical changes
+- Include migration guidance for breaking changes
+- Suggest installation/upgrade instructions
+- Link to relevant documentation
+
+## Output Format
+
+### For Beta Releases
+
+Example: 
+```markdown
+## v0.13.0b4 (2025-06-03)
+
+### Beta Changes Since v0.13.0b3
+
+- Fix FastMCP API compatibility issues
+- Update dependencies to latest versions  
+- Resolve setuptools import error
+
+### Installation
+```bash
+uv tool install basic-memory --prerelease=allow
+```
+
+### Known Issues
+- [List any known issues for beta testing]
+```
+
+### For Stable Releases
+Full changelog with complete feature list, organized by impact and category.
+
+## Context
+- Follows existing CHANGELOG.md format and style
+- Uses conventional commit standards
+- Includes GitHub commit links for traceability
+- Focuses on user-facing changes and value
+- Maintains consistency with previous entries
@@ -0,0 +1,131 @@
+# /release-check - Pre-flight Release Validation
+
+Comprehensive pre-flight check for release readiness without making any changes.
+
+## Usage
+```
+/release-check [version]
+```
+
+**Parameters:**
+- `version` (optional): Version to validate like `v0.13.0`. If not provided, determines from context.
+
+## Implementation
+
+You are an expert QA engineer for the Basic Memory project. When the user runs `/release-check`, execute the following validation steps:
+
+### Step 1: Environment Validation
+1. **Git Status Check**
+   - Verify working directory is clean
+   - Confirm on `main` branch
+   - Check if ahead/behind origin
+
+2. **Version Validation**
+   - Validate version format if provided
+   - Check for existing tags with same version
+   - Verify version increments properly from last release
+
+### Step 2: Code Quality Gates
+1. **Test Suite Validation**
+   ```bash
+   just test
+   ```
+   - All tests must pass
+   - Check test coverage (target: 95%+)
+   - Validate no skipped critical tests
+
+2. **Code Quality Checks**
+   ```bash
+   just lint
+   just type-check
+   ```
+   - No linting errors
+   - No type checking errors
+   - Code formatting is consistent
+
+### Step 3: Documentation Validation
+1. **Changelog Check**
+   - CHANGELOG.md contains entry for target version
+   - Entry includes all major features and fixes
+   - Breaking changes are documented
+
+2. **Documentation Currency**
+   - README.md reflects current functionality
+   - CLI reference is up to date
+   - MCP tools are documented
+
+### Step 4: Dependency Validation
+1. **Security Scan**
+   - No known vulnerabilities in dependencies
+   - All dependencies are at appropriate versions
+   - No conflicting dependency versions
+
+2. **Build Validation**
+   - Package builds successfully
+   - All required files are included
+   - No missing dependencies
+
+### Step 5: Issue Tracking Validation
+1. **GitHub Issues Check**
+   - No critical open issues blocking release
+   - All milestone issues are resolved
+   - High-priority bugs are fixed
+
+2. **Testing Coverage**
+   - Integration tests pass
+   - MCP tool tests pass
+   - Cross-platform compatibility verified
+
+## Report Format
+
+Generate a comprehensive report:
+
+```
+🔍 Release Readiness Check for v0.13.0
+
+✅ PASSED CHECKS:
+├── Git status clean
+├── On main branch  
+├── All tests passing (744/744)
+├── Test coverage: 98.2%
+├── Type checking passed
+├── Linting passed
+├── CHANGELOG.md updated
+└── No critical issues open
+
+⚠️  WARNINGS:
+├── 2 medium-priority issues still open
+└── Documentation could be updated
+
+❌ BLOCKING ISSUES:
+└── None found
+
+🎯 RELEASE READINESS: ✅ READY
+
+Recommended next steps:
+1. Address warnings if desired
+2. Run `/release v0.13.0` when ready
+```
+
+## Validation Criteria
+
+### Must Pass (Blocking)
+- [ ] All tests pass
+- [ ] No type errors
+- [ ] No linting errors  
+- [ ] Working directory clean
+- [ ] On main branch
+- [ ] CHANGELOG.md has version entry
+- [ ] No critical open issues
+
+### Should Pass (Warnings)
+- [ ] Test coverage >95%
+- [ ] No medium-priority open issues
+- [ ] Documentation up to date
+- [ ] No dependency vulnerabilities
+
+## Context
+- This is a read-only validation - makes no changes
+- Provides confidence before running actual release
+- Helps identify issues early in release process
+- Can be run multiple times safely
@@ -0,0 +1,92 @@
+# /release - Create Stable Release
+
+Create a stable release using the automated justfile target with comprehensive validation.
+
+## Usage
+```
+/release <version>
+```
+
+**Parameters:**
+- `version` (required): Release version like `v0.13.2`
+
+## Implementation
+
+You are an expert release manager for the Basic Memory project. When the user runs `/release`, execute the following steps:
+
+### Step 1: Pre-flight Validation
+1. Verify version format matches `v\d+\.\d+\.\d+` pattern
+2. Check current git status for uncommitted changes  
+3. Verify we're on the `main` branch
+4. Confirm no existing tag with this version
+
+#### Documentation Validation
+1. **Changelog Check**
+   - CHANGELOG.md contains entry for target version
+   - Entry includes all major features and fixes
+   - Breaking changes are documented
+
+### Step 2: Use Justfile Automation
+Execute the automated release process:
+```bash
+just release <version>
+```
+
+The justfile target handles:
+- ✅ Version format validation
+- ✅ Git status and branch checks
+- ✅ Quality checks (`just check` - lint, format, type-check, tests)
+- ✅ Version update in `src/basic_memory/__init__.py`
+- ✅ Automatic commit with proper message
+- ✅ Tag creation and pushing to GitHub
+- ✅ Release workflow trigger
+
+### Step 3: Monitor Release Process
+1. Check that GitHub Actions workflow starts successfully
+2. Monitor workflow completion at: https://github.com/basicmachines-co/basic-memory/actions
+3. Verify PyPI publication
+4. Test installation: `uv tool install basic-memory`
+
+### Step 4: Post-Release Validation
+1. Verify GitHub release is created automatically
+2. Check PyPI publication
+3. Validate release assets
+4. Update any post-release documentation
+
+## Pre-conditions Check
+Before starting, verify:
+- [ ] All beta testing is complete
+- [ ] Critical bugs are fixed
+- [ ] Breaking changes are documented
+- [ ] CHANGELOG.md is updated (if needed)
+- [ ] Version number follows semantic versioning
+
+## Error Handling
+- If `just release` fails, examine the error output for specific issues
+- If quality checks fail, fix issues and retry
+- If changelog entry missing, update CHANGELOG.md and commit before retrying
+- If GitHub Actions fail, check workflow logs for debugging
+
+## Success Output
+```
+🎉 Stable Release v0.13.2 Created Successfully!
+
+🏷️  Tag: v0.13.2
+📋 GitHub Release: https://github.com/basicmachines-co/basic-memory/releases/tag/v0.13.2
+📦 PyPI: https://pypi.org/project/basic-memory/0.13.2/
+🚀 GitHub Actions: Completed
+
+Install with:
+uv tool install basic-memory
+
+Users can now upgrade:
+uv tool upgrade basic-memory
+```
+
+## Context
+- This creates production releases used by end users
+- Must pass all quality gates before proceeding
+- Uses the automated justfile target for consistency
+- Version is automatically updated in `__init__.py`
+- Triggers automated GitHub release with changelog
+- Leverages uv-dynamic-versioning for package version management
@@ -0,0 +1,595 @@
+# /project:test-live - Live Basic Memory Testing Suite
+
+Execute comprehensive real-world testing of Basic Memory using the installed version. 
+All test results are recorded as notes in a dedicated test project.
+
+## Usage
+```
+/project:test-live [phase]
+```
+
+**Parameters:**
+- `phase` (optional): Specific test phase to run (`recent`, `core`, `features`, `edge`, `workflows`, `stress`, or `all`)
+- `recent` - Focus on recent changes and new features (recommended for regular testing)
+- `core` - Essential tools only (Tier 1: write_note, read_note, search_notes, edit_note, list_projects, switch_project)
+- `features` - Core + important workflows (Tier 1 + Tier 2)
+- `all` - Comprehensive testing of all tools and scenarios
+
+## Implementation
+
+You are an expert QA engineer conducting live testing of Basic Memory. 
+When the user runs `/project:test-live`, execute comprehensive test plan:
+
+## Tool Testing Priority
+
+### **Tier 1: Critical Core (Always Test)**
+1. **write_note** - Foundation of all knowledge creation
+2. **read_note** - Primary knowledge retrieval mechanism  
+3. **search_notes** - Essential for finding information
+4. **edit_note** - Core content modification capability
+5. **list_memory_projects** - Project discovery and status
+6. **switch_project** - Context switching for multi-project workflows
+
+### **Tier 2: Important Workflows (Usually Test)**
+7. **recent_activity** - Understanding what's changed
+8. **build_context** - Conversation continuity via memory:// URLs
+9. **create_memory_project** - Essential for project setup
+10. **move_note** - Knowledge organization
+11. **sync_status** - Understanding system state
+
+### **Tier 3: Enhanced Functionality (Sometimes Test)**
+12. **view_note** - Claude Desktop artifact display
+13. **read_content** - Raw content access
+14. **delete_note** - Content removal
+15. **list_directory** - File system exploration
+16. **set_default_project** - Configuration
+17. **delete_project** - Administrative cleanup
+
+### **Tier 4: Specialized (Rarely Test)**
+18. **canvas** - Obsidian visualization (specialized use case)
+19. **MCP Prompts** - Enhanced UX tools (ai_assistant_guide, continue_conversation)
+
+### Pre-Test Setup
+
+1. **Environment Verification**
+   - Verify basic-memory is installed and accessible via MCP
+   - Check version and confirm it's the expected release
+   - Test MCP connection and tool availability
+
+2. **Recent Changes Analysis** (if phase includes 'recent' or 'all')
+   - Run `git log --oneline -20` to examine recent commits
+   - Identify new features, bug fixes, and enhancements
+   - Generate targeted test scenarios for recent changes
+   - Prioritize regression testing for recently fixed issues
+
+3. **Test Project Creation**
+
+Run the bash `date` command to get the current date/time. 
+
+   ```
+   Create project: "basic-memory-testing-[timestamp]"
+   Location: ~/basic-memory-testing-[timestamp]
+   Purpose: Record all test observations and results
+   ```
+
+Make sure to switch to the newly created project with the `switch_project()` tool.
+
+4. **Baseline Documentation**
+   Create initial test session note with:
+   - Test environment details
+   - Version being tested
+   - Recent changes identified (if applicable)
+   - Test objectives and scope
+   - Start timestamp
+
+### Phase 0: Recent Changes Validation (if 'recent' or 'all' phase)
+
+Based on recent commit analysis, create targeted test scenarios:
+
+**Recent Changes Test Protocol:**
+1. **Feature Addition Tests** - For each new feature identified:
+   - Test basic functionality
+   - Test integration with existing tools
+   - Verify documentation accuracy
+   - Test edge cases and error handling
+
+2. **Bug Fix Regression Tests** - For each recent fix:
+   - Recreate the original problem scenario
+   - Verify the fix works as expected
+   - Test related functionality isn't broken
+   - Document the verification in test notes
+
+3. **Performance/Enhancement Validation** - For optimizations:
+   - Establish baseline timing
+   - Compare with expected improvements
+   - Test under various load conditions
+   - Document performance observations
+
+**Example Recent Changes (Update based on actual git log):**
+- Watch Service Restart (#156): Test project creation → file modification → automatic restart
+- Cross-Project Moves (#161): Test move_note with cross-project detection
+- Docker Environment Support (#174): Test BASIC_MEMORY_HOME behavior
+- MCP Server Logging (#164): Verify log level configurations
+
+### Phase 1: Core Functionality Validation (Tier 1 Tools)
+
+Test essential MCP tools that form the foundation of Basic Memory:
+
+**1. write_note Tests (Critical):**
+- ✅ Basic note creation with frontmatter
+- ✅ Special characters and Unicode in titles
+- ✅ Various content types (lists, headings, code blocks)
+- ✅ Empty notes and minimal content edge cases
+- ⚠️ Error handling for invalid parameters
+
+**2. read_note Tests (Critical):**
+- ✅ Read by title, permalink, memory:// URLs
+- ✅ Non-existent notes (error handling)
+- ✅ Notes with complex markdown formatting
+- ⚠️ Performance with large notes (>10MB)
+
+**3. search_notes Tests (Critical):**
+- ✅ Simple text queries across content
+- ✅ Tag-based searches with multiple tags
+- ✅ Boolean operators (AND, OR, NOT)
+- ✅ Empty/no results scenarios
+- ⚠️ Performance with 100+ notes
+
+**4. edit_note Tests (Critical):**
+- ✅ Append operations preserving frontmatter
+- ✅ Prepend operations
+- ✅ Find/replace with validation
+- ✅ Section replacement under headers
+- ⚠️ Error scenarios (invalid operations)
+
+**5. list_memory_projects Tests (Critical):**
+- ✅ Display all projects with status indicators
+- ✅ Current and default project identification
+- ✅ Empty project list handling
+- ✅ Project metadata accuracy
+
+**6. switch_project Tests (Critical):**
+- ✅ Switch between existing projects
+- ✅ Context preservation during switch
+- ⚠️ Invalid project name handling
+- ✅ Confirmation of successful switch
+
+### Phase 2: Important Workflows (Tier 2 Tools)
+
+**7. recent_activity Tests (Important):**
+- ✅ Various timeframes ("today", "1 week", "1d")
+- ✅ Type filtering capabilities
+- ✅ Empty project scenarios
+- ⚠️ Performance with many recent changes
+
+**8. build_context Tests (Important):**
+- ✅ Different depth levels (1, 2, 3+)
+- ✅ Various timeframes for context
+- ✅ memory:// URL navigation
+- ⚠️ Performance with complex relation graphs
+
+**9. create_memory_project Tests (Important):**
+- ✅ Create projects dynamically
+- ✅ Set default during creation
+- ✅ Path validation and creation
+- ⚠️ Invalid paths and names
+- ✅ Integration with existing projects
+
+**10. move_note Tests (Important):**
+- ✅ Move within same project
+- ✅ Cross-project moves with detection (#161)
+- ✅ Automatic folder creation
+- ✅ Database consistency validation
+- ⚠️ Special characters in paths
+
+**11. sync_status Tests (Important):**
+- ✅ Background operation monitoring
+- ✅ File synchronization status
+- ✅ Project sync state reporting
+- ⚠️ Error state handling
+
+### Phase 3: Enhanced Functionality (Tier 3 Tools)
+
+**12. view_note Tests (Enhanced):**
+- ✅ Claude Desktop artifact display
+- ✅ Title extraction from frontmatter
+- ✅ Unicode and emoji content rendering
+- ⚠️ Error handling for non-existent notes
+
+**13. read_content Tests (Enhanced):**
+- ✅ Raw file content access
+- ✅ Binary file handling
+- ✅ Image file reading
+- ⚠️ Large file performance
+
+**14. delete_note Tests (Enhanced):**
+- ✅ Single note deletion
+- ✅ Database consistency after deletion
+- ⚠️ Non-existent note handling
+- ✅ Confirmation of successful deletion
+
+**15. list_directory Tests (Enhanced):**
+- ✅ Directory content listing
+- ✅ Depth control and filtering
+- ✅ File name globbing
+- ⚠️ Empty directory handling
+
+**16. set_default_project Tests (Enhanced):**
+- ✅ Change default project
+- ✅ Configuration persistence
+- ⚠️ Invalid project handling
+
+**17. delete_project Tests (Enhanced):**
+- ✅ Project removal from config
+- ✅ Database cleanup
+- ⚠️ Default project protection
+- ⚠️ Non-existent project handling
+
+### Phase 4: Edge Case Exploration
+
+**Boundary Testing:**
+- Very long titles and content (stress limits)
+- Empty projects and notes
+- Unicode, emojis, special symbols
+- Deeply nested folder structures
+- Circular relations and self-references
+- Maximum relation depths
+
+**Error Scenarios:**
+- Invalid memory:// URLs
+- Missing files referenced in database
+- Invalid project names and paths
+- Malformed note structures
+- Concurrent operation conflicts
+
+**Performance Testing:**
+- Create 100+ notes rapidly
+- Complex search queries
+- Deep relation chains (5+ levels)
+- Rapid successive operations
+- Memory usage monitoring
+
+### Phase 5: Real-World Workflow Scenarios
+
+**Meeting Notes Pipeline:**
+1. Create meeting notes with action items
+2. Extract action items using edit_note
+3. Build relations to project documents
+4. Update progress incrementally
+5. Search and track completion
+
+**Research Knowledge Building:**
+1. Create research topic hierarchy
+2. Build complex relation networks
+3. Add incremental findings over time
+4. Search for connections and patterns
+5. Reorganize as knowledge evolves
+
+**Multi-Project Workflow:**
+1. Technical documentation project
+2. Personal recipe collection project
+3. Learning/course notes project
+4. Switch contexts during conversation
+5. Cross-reference related concepts
+
+**Content Evolution:**
+1. Start with basic notes
+2. Enhance with relations and observations
+3. Reorganize file structure using moves
+4. Update content with edit operations
+5. Validate knowledge graph integrity
+
+### Phase 6: Specialized Tools Testing (Tier 4)
+
+**18. canvas Tests (Specialized):**
+- ✅ JSON Canvas generation
+- ✅ Node and edge creation
+- ✅ Obsidian compatibility
+- ⚠️ Complex graph handling
+
+**19. MCP Prompts Tests (Specialized):**
+- ✅ ai_assistant_guide output
+- ✅ continue_conversation functionality
+- ✅ Formatted search results
+- ✅ Enhanced activity reports
+
+### Phase 7: Integration & File Watching Tests
+
+**File System Integration:**
+- ✅ Watch service behavior with file changes
+- ✅ Project creation → watch restart (#156)
+- ✅ Multi-project synchronization
+- ⚠️ MCP→API→DB→File stack validation
+
+**Real Integration Testing:**
+- ✅ End-to-end file watching vs manual operations
+- ✅ Cross-session persistence
+- ✅ Database consistency across operations
+- ⚠️ Performance under real file system changes
+
+### Phase 8: Creative Stress Testing
+
+**Creative Exploration:**
+- Rapid project creation/switching patterns
+- Unusual but valid markdown structures
+- Creative observation categories
+- Novel relation types and patterns
+- Unexpected tool combinations
+
+**Stress Scenarios:**
+- Bulk operations (many notes quickly)
+- Complex nested moves and edits
+- Deep context building
+- Complex boolean search expressions
+- Resource constraint testing
+
+## Test Execution Guidelines
+
+### Quick Testing (core/features phases)
+- Focus on Tier 1 tools (core) or Tier 1+2 (features)
+- Test essential functionality and common edge cases
+- Record critical issues immediately
+- Complete in 15-20 minutes
+
+### Comprehensive Testing (all phase)
+- Cover all tiers systematically
+- Include specialized tools and stress testing
+- Document performance baselines
+- Complete in 45-60 minutes
+
+### Recent Changes Focus (recent phase)
+- Analyze git log for recent commits
+- Generate targeted test scenarios
+- Focus on regression testing for fixes
+- Validate new features thoroughly
+
+## Test Observation Format
+
+Record ALL observations immediately as Basic Memory notes:
+
+```markdown
+---
+title: Test Session [Phase] YYYY-MM-DD HH:MM
+tags: [testing, v0.13.0, live-testing, [phase]]
+permalink: test-session-[phase]-[timestamp]
+---
+
+# Test Session [Phase] - [Date/Time]
+
+## Environment
+- Basic Memory version: [version]
+- MCP connection: [status]
+- Test project: [name]
+- Phase focus: [description]
+
+## Test Results
+
+### ✅ Successful Operations
+- [timestamp] ✅ write_note: Created note with emoji title 📝 #tier1 #functionality
+- [timestamp] ✅ search_notes: Boolean query returned 23 results in 0.4s #tier1 #performance  
+- [timestamp] ✅ edit_note: Append operation preserved frontmatter #tier1 #reliability
+
+### ⚠️ Issues Discovered
+- [timestamp] ⚠️ move_note: Slow with deep folder paths (2.1s) #tier2 #performance
+- [timestamp] 🚨 search_notes: Unicode query returned unexpected results #tier1 #bug #critical
+- [timestamp] ⚠️ build_context: Context lost for memory:// URLs #tier2 #issue
+
+### 🚀 Enhancements Identified
+- edit_note could benefit from preview mode #ux-improvement
+- search_notes needs fuzzy matching for typos #feature-idea
+- move_note could auto-suggest folder creation #usability
+
+### 📊 Performance Metrics
+- Average write_note time: 0.3s
+- Search with 100+ notes: 0.6s
+- Project switch overhead: 0.1s
+- Memory usage: [observed levels]
+
+## Relations
+- tests [[Basic Memory v0.13.0]]
+- part_of [[Live Testing Suite]]
+- found_issues [[Bug Report: Unicode Search]]
+- discovered [[Performance Optimization Opportunities]]
+```
+
+## Quality Assessment Areas
+
+**User Experience & Usability:**
+- Tool instruction clarity and examples
+- Error message actionability
+- Response time acceptability
+- Tool consistency and discoverability
+- Learning curve and intuitiveness
+
+**System Behavior:**
+- Context preservation across operations
+- memory:// URL navigation reliability
+- Multi-step workflow cohesion
+- Edge case graceful handling
+- Recovery from user errors
+
+**Documentation Alignment:**
+- Tool output clarity and helpfulness
+- Behavior vs. documentation accuracy
+- Example validity and usefulness
+- Real-world vs. documented workflows
+
+**Mental Model Validation:**
+- Natural user expectation alignment
+- Surprising behavior identification
+- Mistake recovery ease
+- Knowledge graph concept naturalness
+
+**Performance & Reliability:**
+- Operation completion times
+- Consistency across sessions
+- Scaling behavior with growth
+- Unexpected slowness identification
+
+## Error Documentation Protocol
+
+For each error discovered:
+
+1. **Immediate Recording**
+   - Create dedicated error note
+   - Include exact reproduction steps
+   - Capture error messages verbatim
+   - Note system state when error occurred
+
+2. **Error Note Format**
+   ```markdown
+   ---
+   title: Bug Report - [Short Description]
+   tags: [bug, testing, v0.13.0, [severity]]
+   ---
+   
+   # Bug Report: [Description]
+   
+   ## Reproduction Steps
+   1. [Exact steps to reproduce]
+   2. [Include all parameters used]
+   3. [Note any special conditions]
+   
+   ## Expected Behavior
+   [What should have happened]
+   
+   ## Actual Behavior  
+   [What actually happened]
+   
+   ## Error Messages
+   ```
+   [Exact error text]
+   ```
+   
+   ## Environment
+   - Version: [version]
+   - Project: [name]
+   - Timestamp: [when]
+   
+   ## Severity
+   - [ ] Critical (blocks major functionality)
+   - [ ] High (impacts user experience)
+   - [ ] Medium (workaround available)
+   - [ ] Low (minor inconvenience)
+   
+   ## Relations
+   - discovered_during [[Test Session [Phase]]]
+   - affects [[Feature Name]]
+   ```
+
+## Success Metrics Tracking
+
+**Quantitative Measures:**
+- Test scenario completion rate
+- Bug discovery count with severity
+- Performance benchmark establishment
+- Tool coverage completeness
+
+**Qualitative Measures:**
+- Conversation flow naturalness
+- Knowledge graph quality
+- User experience insights
+- System reliability assessment
+
+## Test Execution Flow
+
+1. **Setup Phase** (5 minutes)
+   - Verify environment and create test project
+   - Record baseline system state
+   - Establish performance benchmarks
+
+2. **Core Testing** (15-20 minutes per phase)
+   - Execute test scenarios systematically
+   - Record observations immediately
+   - Note timestamps for performance tracking
+   - Explore variations when interesting behaviors occur
+
+3. **Documentation** (5 minutes per phase)
+   - Create phase summary note
+   - Link related test observations
+   - Update running issues list
+   - Record enhancement ideas
+
+4. **Analysis Phase** (10 minutes)
+   - Review all observations across phases
+   - Identify patterns and trends
+   - Create comprehensive summary report
+   - Generate development recommendations
+
+## Testing Success Criteria
+
+### Core Testing (Tier 1) - Must Pass
+- All 6 critical tools function correctly
+- No critical bugs in essential workflows
+- Acceptable performance for basic operations
+- Error handling works as expected
+
+### Feature Testing (Tier 1+2) - Should Pass
+- All 11 core + important tools function
+- Workflow scenarios complete successfully
+- Performance meets baseline expectations
+- Integration points work correctly
+
+### Comprehensive Testing (All Tiers) - Complete Coverage
+- All tools tested across all scenarios
+- Edge cases and stress testing completed
+- Performance baselines established
+- Full documentation of issues and enhancements
+
+## Expected Outcomes
+
+**System Validation:**
+- Feature verification prioritized by tier importance
+- Recent changes validated for regression
+- Performance baseline establishment
+- Bug identification with severity assessment
+
+**Knowledge Base Creation:**
+- Prioritized testing documentation
+- Real usage examples for user guides
+- Recent changes validation records
+- Performance insights for optimization
+
+**Development Insights:**
+- Tier-based bug priority list
+- Recent changes impact assessment
+- Enhancement ideas from real usage
+- User experience improvement areas
+
+## Post-Test Deliverables
+
+1. **Test Summary Note**
+   - Overall results and findings
+   - Critical issues requiring immediate attention
+   - Enhancement opportunities discovered
+   - System readiness assessment
+
+2. **Bug Report Collection**
+   - All discovered issues with reproduction steps
+   - Severity and impact assessments
+   - Suggested fixes where applicable
+
+3. **Performance Baseline**
+   - Timing data for all operations
+   - Scaling behavior observations
+   - Resource usage patterns
+
+4. **UX Improvement Recommendations**
+   - Usability enhancement suggestions
+   - Documentation improvement areas
+   - Tool design optimization ideas
+
+5. **Updated TESTING.md**
+   - Incorporate new test scenarios discovered
+   - Update based on real execution experience
+   - Add performance benchmarks and targets
+
+## Context
+- Uses real installed basic-memory version 
+- Tests complete MCP→API→DB→File stack
+- Creates living documentation in Basic Memory itself
+- Follows integration over isolation philosophy
+- Prioritizes testing by tool importance and usage frequency
+- Adapts to recent development changes dynamically
+- Focuses on real usage patterns over checklist validation
+- Generates actionable insights prioritized by impact
@@ -0,0 +1,60 @@
+# Git files
+.git/
+.gitignore
+.gitattributes
+
+# Development files
+.vscode/
+.idea/
+*.swp
+*.swo
+*~
+
+# Testing files
+tests/
+test-int/
+.pytest_cache/
+.coverage
+htmlcov/
+
+# Build artifacts
+build/
+dist/
+*.egg-info/
+__pycache__/
+*.pyc
+*.pyo
+*.pyd
+.Python
+
+# Virtual environments (uv creates these during build)
+.venv/
+venv/
+.env
+
+# CI/CD files
+.github/
+
+# Documentation (keep README.md and pyproject.toml)
+docs/
+CHANGELOG.md
+CLAUDE.md
+CONTRIBUTING.md
+
+# Example files not needed for runtime
+examples/
+
+# Local development files
+.basic-memory/
+*.db
+*.sqlite3
+
+# OS files
+.DS_Store
+Thumbs.db
+
+# Temporary files
+tmp/
+temp/
+*.tmp
+*.log
@@ -0,0 +1,38 @@
+---
+name: Bug report
+about: Create a report to help us improve Basic Memory
+title: '[BUG] '
+labels: bug
+assignees: ''
+---
+
+## Bug Description
+A clear and concise description of what the bug is.
+
+## Steps To Reproduce
+Steps to reproduce the behavior:
+1. Install version '...'
+2. Run command '...'
+3. Use tool/feature '...'
+4. See error
+
+## Expected Behavior
+A clear and concise description of what you expected to happen.
+
+## Actual Behavior
+What actually happened, including error messages and output.
+
+## Environment
+- OS: [e.g. macOS 14.2, Ubuntu 22.04]
+- Python version: [e.g. 3.12.1]
+- Basic Memory version: [e.g. 0.1.0]
+- Installation method: [e.g. pip, uv, source]
+- Claude Desktop version (if applicable):
+
+## Additional Context
+- Configuration files (if relevant)
+- Logs or screenshots
+- Any special configuration or environment variables
+
+## Possible Solution
+If you have any ideas on what might be causing the issue or how to fix it, please share them here.
@@ -0,0 +1,8 @@
+blank_issues_enabled: false
+contact_links:
+  - name: Basic Memory Discussions
+    url: https://github.com/basicmachines-co/basic-memory/discussions
+    about: For questions, ideas, or more open-ended discussions
+  - name: Documentation
+    url: https://github.com/basicmachines-co/basic-memory#readme
+    about: Please check the documentation first before reporting an issue
@@ -0,0 +1,19 @@
+---
+name: Documentation improvement
+about: Suggest improvements or report issues with documentation
+title: '[DOCS] '
+labels: documentation
+assignees: ''
+---
+
+## Documentation Issue
+Describe what's missing, unclear, or incorrect in the current documentation.
+
+## Location
+Where is the problematic documentation? (URL, file path, or section)
+
+## Suggested Improvement
+How would you improve this documentation? Please be as specific as possible.
+
+## Additional Context
+Any additional information or screenshots that might help explain the issue or improvement.
@@ -0,0 +1,28 @@
+---
+name: Feature request
+about: Suggest an idea for Basic Memory
+title: '[FEATURE] '
+labels: enhancement
+assignees: ''
+---
+
+## Feature Description
+A clear and concise description of the feature you'd like to see implemented.
+
+## Problem This Feature Solves
+Describe the problem or limitation you're experiencing that this feature would address.
+
+## Proposed Solution
+Describe how you envision this feature working. Include:
+- User workflow
+- Interface design (if applicable)
+- Technical approach (if you have ideas)
+
+## Alternative Solutions
+Have you considered any alternative solutions or workarounds?
+
+## Additional Context
+Add any other context, screenshots, or examples about the feature request here.
+
+## Impact
+How would this feature benefit you and other users of Basic Memory?
@@ -0,0 +1,12 @@
+# To get started with Dependabot version updates, you'll need to specify which
+# package ecosystems to update and where the package manifests are located.
+# Please see the documentation for all configuration options:
+# https://docs.github.com/code-security/dependabot/dependabot-version-updates/configuration-options-for-the-dependabot.yml-file
+
+version: 2
+updates:
+  - package-ecosystem: "" # See documentation for possible values
+    directory: "/" # Location of package manifests
+    schedule:
+      interval: "weekly"
+      
@@ -0,0 +1,114 @@
+name: Claude Code
+
+on:
+  issue_comment:
+    types: [created]
+  pull_request_review_comment:
+    types: [created]
+  issues:
+    types: [opened, assigned]
+  pull_request_review:
+    types: [submitted]
+
+jobs:
+  claude:
+    if: |
+      (github.event_name == 'issue_comment' && contains(github.event.comment.body, '@claude')) ||
+      (github.event_name == 'pull_request_review_comment' && contains(github.event.comment.body, '@claude')) ||
+      (github.event_name == 'pull_request_review' && contains(github.event.review.body, '@claude')) ||
+      (github.event_name == 'issues' && (contains(github.event.issue.body, '@claude') || contains(github.event.issue.title, '@claude')))
+
+    runs-on: ubuntu-latest
+    permissions:
+      contents: read
+      pull-requests: read
+      issues: read
+      id-token: write
+    steps:
+      - name: Check user permissions
+        id: check_membership
+        uses: actions/github-script@v7
+        with:
+          script: |
+            let actor;
+            if (context.eventName === 'issue_comment') {
+              actor = context.payload.comment.user.login;
+            } else if (context.eventName === 'pull_request_review_comment') {
+              actor = context.payload.comment.user.login;
+            } else if (context.eventName === 'pull_request_review') {
+              actor = context.payload.review.user.login;
+            } else if (context.eventName === 'issues') {
+              actor = context.payload.issue.user.login;
+            }
+            
+            console.log(`Checking permissions for user: ${actor}`);
+            
+            // List of explicitly allowed users (organization members)
+            const allowedUsers = [
+              'phernandez',
+              'groksrc',
+              'nellins',
+              'bm-claudeai'
+            ];
+            
+            if (allowedUsers.includes(actor)) {
+              console.log(`User ${actor} is in the allowed list`);
+              core.setOutput('is_member', true);
+              return;
+            }
+            
+            // Fallback: Check if user has repository permissions
+            try {
+              const collaboration = await github.rest.repos.getCollaboratorPermissionLevel({
+                owner: context.repo.owner,
+                repo: context.repo.repo,
+                username: actor
+              });
+              
+              const permission = collaboration.data.permission;
+              console.log(`User ${actor} has permission level: ${permission}`);
+              
+              // Allow if user has push access or higher (write, maintain, admin)
+              const allowed = ['write', 'maintain', 'admin'].includes(permission);
+              
+              core.setOutput('is_member', allowed);
+              
+              if (!allowed) {
+                core.notice(`User ${actor} does not have sufficient repository permissions (has: ${permission})`);
+              }
+            } catch (error) {
+              console.log(`Error checking permissions: ${error.message}`);
+              
+              // Final fallback: Check if user is a public member of the organization
+              try {
+                const membership = await github.rest.orgs.getMembershipForUser({
+                  org: 'basicmachines-co',
+                  username: actor
+                });
+                
+                const allowed = membership.data.state === 'active';
+                core.setOutput('is_member', allowed);
+                
+                if (!allowed) {
+                  core.notice(`User ${actor} is not a public member of basicmachines-co organization`);
+                }
+              } catch (membershipError) {
+                console.log(`Error checking organization membership: ${membershipError.message}`);
+                core.setOutput('is_member', false);
+                core.notice(`User ${actor} does not have access to this repository`);
+              }
+            }
+
+      - name: Checkout repository
+        if: steps.check_membership.outputs.is_member == 'true'
+        uses: actions/checkout@v4
+        with:
+          fetch-depth: 1
+
+      - name: Run Claude Code
+        if: steps.check_membership.outputs.is_member == 'true'
+        id: claude
+        uses: anthropics/claude-code-action@beta
+        with:
+          anthropic_api_key: ${{ secrets.ANTHROPIC_API_KEY }}
+          allowed_tools: Bash(uv run pytest),Bash(uv run ruff check . --fix),Bash(uv run ruff format .),Bash(uv run pyright),Bash(just test),Bash(just lint),Bash(just format),Bash(just type-check),Bash(just check),Read,Write,Edit,MultiEdit,Glob,Grep,LS, mcp__web_search
@@ -0,0 +1,53 @@
+name: Dev Release
+
+on:
+  push:
+    branches: [main]
+  workflow_dispatch:  # Allow manual triggering
+
+jobs:
+  dev-release:
+    runs-on: ubuntu-latest
+    permissions:
+      id-token: write
+      contents: write
+
+    steps:
+      - uses: actions/checkout@v4
+        with:
+          fetch-depth: 0
+
+      - name: Set up Python
+        uses: actions/setup-python@v5
+        with:
+          python-version: "3.12"
+
+      - name: Install uv
+        run: |
+          pip install uv
+
+      - name: Install dependencies and build
+        run: |
+          uv venv
+          uv sync
+          uv build
+
+      - name: Check if this is a dev version
+        id: check_version
+        run: |
+          VERSION=$(uv run python -c "import basic_memory; print(basic_memory.__version__)")
+          echo "version=$VERSION" >> $GITHUB_OUTPUT
+          if [[ "$VERSION" == *"dev"* ]]; then
+            echo "is_dev=true" >> $GITHUB_OUTPUT
+            echo "Dev version detected: $VERSION"
+          else
+            echo "is_dev=false" >> $GITHUB_OUTPUT
+            echo "Release version detected: $VERSION, skipping dev release"
+          fi
+
+      - name: Publish dev version to PyPI
+        if: steps.check_version.outputs.is_dev == 'true'
+        uses: pypa/gh-action-pypi-publish@release/v1
+        with:
+          password: ${{ secrets.PYPI_TOKEN }}
+          skip-existing: true  # Don't fail if version already exists
@@ -0,0 +1,61 @@
+name: Docker Image CI
+
+on:
+  push:
+    tags:
+      - 'v*'  # Trigger on version tags like v1.0.0, v0.13.0, etc.
+  workflow_dispatch:  # Allow manual triggering for testing
+
+env:
+  REGISTRY: ghcr.io
+  IMAGE_NAME: basicmachines-co/basic-memory
+
+jobs:
+  docker:
+    runs-on: ubuntu-latest
+    permissions:
+      contents: read
+      packages: write
+
+    steps:
+      - name: Checkout repository
+        uses: actions/checkout@v4
+        with:
+          fetch-depth: 0
+
+      - name: Set up Docker Buildx
+        uses: docker/setup-buildx-action@v3
+        with:
+          platforms: linux/amd64,linux/arm64
+
+      - name: Log in to GitHub Container Registry
+        uses: docker/login-action@v3
+        with:
+          registry: ${{ env.REGISTRY }}
+          username: ${{ github.actor }}
+          password: ${{ secrets.GITHUB_TOKEN }}
+
+      - name: Extract metadata
+        id: meta
+        uses: docker/metadata-action@v5
+        with:
+          images: ${{ env.REGISTRY }}/${{ env.IMAGE_NAME }}
+          tags: |
+            type=ref,event=branch
+            type=ref,event=pr
+            type=semver,pattern={{version}}
+            type=semver,pattern={{major}}.{{minor}}
+            type=raw,value=latest,enable={{is_default_branch}}
+
+      - name: Build and push Docker image
+        uses: docker/build-push-action@v5
+        with:
+          context: .
+          file: ./Dockerfile
+          platforms: linux/amd64,linux/arm64
+          push: true
+          tags: ${{ steps.meta.outputs.tags }}
+          labels: ${{ steps.meta.outputs.labels }}
+          cache-from: type=gha
+          cache-to: type=gha,mode=max
+
@@ -1,118 +1,85 @@
 name: Release

 on:
-  workflow_dispatch:
-    inputs:
-      version_type:
-        description: 'Type of version bump (major, minor, patch)'
-        required: true
-        default: 'patch'
-        type: choice
-        options:
-          - patch
-          - minor
-          - major
+  push:
+    tags:
+      - 'v*'  # Trigger on version tags like v1.0.0, v0.13.0, etc.

 jobs:
  release:
    runs-on: ubuntu-latest
-    concurrency: release
    permissions:
      id-token: write
      contents: write
-    outputs:
-      released: ${{ steps.release.outputs.released }}
-      tag: ${{ steps.release.outputs.tag }}

    steps:
      - uses: actions/checkout@v4
        with:
          fetch-depth: 0

-      - name: Python Semantic Release
-        id: release
-        uses: python-semantic-release/python-semantic-release@master
-        with:
-          github_token: ${{ secrets.GITHUB_TOKEN }}
-
-      - name: Publish to PyPI
-        uses: pypa/gh-action-pypi-publish@release/v1
-        if: steps.release.outputs.released == 'true'
-        with:
-          password: ${{ secrets.PYPI_TOKEN }}
-
-      - name: Publish to GitHub Release Assets
-        uses: python-semantic-release/publish-action@v9.8.9
-        if: steps.release.outputs.released == 'true'
-        with:
-          github_token: ${{ secrets.GITHUB_TOKEN }}
-          tag: ${{ steps.release.outputs.tag }}
-
-  build-macos:
-    needs: release
-    if: needs.release.outputs.released == 'true'
-    runs-on: macos-latest
-    steps:
-      - uses: actions/checkout@v4
-        with:
-          ref: ${{ needs.release.outputs.tag }}
-
      - name: Set up Python
        uses: actions/setup-python@v5
        with:
-          python-version: '3.12'
+          python-version: "3.12"

      - name: Install uv
        run: |
          pip install uv

-      - name: Create virtual env
+      - name: Install dependencies and build
        run: |
          uv venv
+          uv sync
+          uv build

-      - name: Install dependencies
+      - name: Verify build succeeded
        run: |
-          uv pip install -e .[dev]
+          # Verify that build artifacts exist
+          ls -la dist/
+          echo "Build completed successfully"

-      - name: Install librsvg
-        run: brew install librsvg
-
-      - name: Create icon
-        run: |
-          cd installer
-          chmod +x make_icons.sh
-          ./make_icons.sh
-
-      - name: Build macOS installer
-        run: |
-          # Debug info
-          echo "Environment Info:"
-          uv pip list
-          python --version
-          which uv
-          which python
-          ls -la $(dirname $(which python))
-          echo "PYTHONPATH=$PYTHONPATH" 
-          
-          # Build
-          make installer-mac
-          #xattr -dr com.apple.quarantine "installer/build/Basic Memory Installer.app"
-
-      - name: Inspect build
-        run: |
-          echo "Build structure:"
-          ls -la installer/build/Basic\ Memory\ Installer.app/Contents/MacOS/
-
-
-      #      - name: Zip macOS installer
-      #        run: |
-      #          cd installer/build
-      #          zip -ry "Basic-Memory-Installer-${{ needs.release.outputs.tag }}.zip" "Basic Memory Installer.app"
-
-      - name: Upload macOS installer
-        uses: softprops/action-gh-release@v1
+      - name: Create GitHub Release
+        uses: softprops/action-gh-release@v2
        with:
-          #files: installer/build/Basic-Memory-Installer-${{ needs.release.outputs.tag }}.zip
-          files: installer/build/Basic\ Memory\ Installer.app
-          tag_name: ${{ needs.release.outputs.tag }}
+          files: |
+            dist/*.whl
+            dist/*.tar.gz
+          generate_release_notes: true
+          tag_name: ${{ github.ref_name }}
          token: ${{ secrets.GITHUB_TOKEN }}
+
+      - name: Publish to PyPI
+        uses: pypa/gh-action-pypi-publish@release/v1
+        with:
+          password: ${{ secrets.PYPI_TOKEN }}
+
+  homebrew:
+    name: Update Homebrew Formula
+    needs: release
+    runs-on: ubuntu-latest
+    # Only run for stable releases (not dev, beta, or rc versions)
+    if: ${{ !contains(github.ref_name, 'dev') && !contains(github.ref_name, 'b') && !contains(github.ref_name, 'rc') }}
+    permissions:
+      contents: write
+      actions: read
+    steps:
+      - name: Update Homebrew formula
+        uses: mislav/bump-homebrew-formula-action@v3
+        with:
+          # Formula name in homebrew-basic-memory repo
+          formula-name: basic-memory
+          # The tap repository
+          homebrew-tap: basicmachines-co/homebrew-basic-memory
+          # Base branch of the tap repository
+          base-branch: main
+          # Download URL will be automatically constructed from the tag
+          download-url: https://github.com/basicmachines-co/basic-memory/archive/refs/tags/${{ github.ref_name }}.tar.gz
+          # Commit message for the formula update
+          commit-message: |
+            {{formulaName}} {{version}}
+
+            Created by https://github.com/basicmachines-co/basic-memory/actions/runs/${{ github.run_id }}
+        env:
+          # Personal Access Token with repo scope for homebrew-basic-memory repo
+          COMMITTER_TOKEN: ${{ secrets.HOMEBREW_TOKEN }}
+
@@ -5,14 +5,21 @@ on:
    branches: [ "main" ]
  pull_request:
    branches: [ "main" ]
+  # pull_request_target runs on the BASE of the PR, not the merge result.
+  # It has write permissions and access to secrets.
+  # It's useful for PRs from forks or automated PRs but requires careful use for security reasons.
+  # See: https://docs.github.com/en/actions/using-workflows/events-that-trigger-workflows#pull_request_target
+  pull_request_target:
+    branches: [ "main" ]

 jobs:
  test:
-    runs-on: ubuntu-latest
    strategy:
      fail-fast: false
      matrix:
+        os: [ubuntu-latest, windows-latest]
        python-version: [ "3.12" ]
+    runs-on: ${{ matrix.os }}

    steps:
      - uses: actions/checkout@v4
@@ -29,6 +36,18 @@ jobs:
        run: |
          pip install uv

+      - name: Install just (Linux/macOS)
+        if: runner.os != 'Windows'
+        run: |
+          curl --proto '=https' --tlsv1.2 -sSf https://just.systems/install.sh | bash -s -- --to /usr/local/bin
+
+      - name: Install just (Windows)
+        if: runner.os == 'Windows'
+        run: |
+          # Install just using Chocolatey (pre-installed on GitHub Actions Windows runners)
+          choco install just --yes
+        shell: pwsh
+
      - name: Create virtual env
        run: |
          uv venv
@@ -39,9 +58,9 @@ jobs:

      - name: Run type checks
        run: |
-          uv run make type-check
+          just type-check

      - name: Run tests
        run: |
          uv pip install pytest pytest-cov
-          uv run make test
+          just test
@@ -42,3 +42,14 @@ ENV/

 # macOS
 .DS_Store
+.coverage.*
+
+# obsidian docs:
+/docs/.obsidian/
+/examples/.obsidian/
+/examples/.basic-memory/
+
+
+# claude action
+claude-output
+**/.claude/settings.local.json
@@ -0,0 +1,71 @@
+# Contributor License Agreement
+
+## Copyright Assignment and License Grant
+
+By signing this Contributor License Agreement ("Agreement"), you accept and agree to the following terms and conditions
+for your present and future Contributions submitted
+to Basic Machines LLC. Except for the license granted herein to Basic Machines LLC and recipients of software
+distributed by Basic Machines LLC, you reserve all right,
+title, and interest in and to your Contributions.
+
+### 1. Definitions
+
+"You" (or "Your") shall mean the copyright owner or legal entity authorized by the copyright owner that is making this
+Agreement with Basic Machines LLC.
+
+"Contribution" shall mean any original work of authorship, including any modifications or additions to an existing work,
+that is intentionally submitted by You to Basic
+Machines LLC for inclusion in, or documentation of, any of the products owned or managed by Basic Machines LLC (the "
+Work").
+
+### 2. Grant of Copyright License
+
+Subject to the terms and conditions of this Agreement, You hereby grant to Basic Machines LLC and to recipients of
+software distributed by Basic Machines LLC a perpetual,
+worldwide, non-exclusive, no-charge, royalty-free, irrevocable copyright license to use, copy, modify, merge, publish,
+distribute, sublicense, and/or sell copies of the
+Work, and to permit persons to whom the Work is furnished to do so.
+
+### 3. Assignment of Copyright
+
+You hereby assign to Basic Machines LLC all right, title, and interest worldwide in all Copyright covering your
+Contributions. Basic Machines LLC may license the
+Contributions under any license terms, including copyleft, permissive, commercial, or proprietary licenses.
+
+### 4. Grant of Patent License
+
+Subject to the terms and conditions of this Agreement, You hereby grant to Basic Machines LLC and to recipients of
+software distributed by Basic Machines LLC a perpetual,
+worldwide, non-exclusive, no-charge, royalty-free, irrevocable (except as stated in this section) patent license to
+make, have made, use, offer to sell, sell, import, and
+otherwise transfer the Work.
+
+### 5. Developer Certificate of Origin
+
+By making a Contribution to this project, You certify that:
+
+(a) The Contribution was created in whole or in part by You and You have the right to submit it under this Agreement; or
+
+(b) The Contribution is based upon previous work that, to the best of Your knowledge, is covered under an appropriate
+open source license and You have the right under that
+license to submit that work with modifications, whether created in whole or in part by You, under this Agreement; or
+
+(c) The Contribution was provided directly to You by some other person who certified (a), (b) or (c) and You have not
+modified it.
+
+(d) You understand and agree that this project and the Contribution are public and that a record of the Contribution (
+including all personal information You submit with
+it, including Your sign-off) is maintained indefinitely and may be redistributed consistent with this project or the
+open source license(s) involved.
+
+### 6. Representations
+
+You represent that you are legally entitled to grant the above license and assignment. If your employer(s) has rights to
+intellectual property that you create that
+includes your Contributions, you represent that you have received permission to make Contributions on behalf of that
+employer, or that your employer has waived such rights
+for your Contributions to Basic Machines LLC.
+
+---
+
+This Agreement is effective as of the date you first submit a Contribution to Basic Machines LLC.
@@ -0,0 +1,171 @@
+# CLAUDE.md - Basic Memory Project Guide
+
+## Project Overview
+
+Basic Memory is a local-first knowledge management system built on the Model Context Protocol (MCP). It enables
+bidirectional communication between LLMs (like Claude) and markdown files, creating a personal knowledge graph that can
+be traversed using links between documents.
+
+## CODEBASE DEVELOPMENT
+
+### Project information
+
+See the [README.md](README.md) file for a project overview.
+
+### Build and Test Commands
+
+- Install: `make install` or `pip install -e ".[dev]"`
+- Run tests: `uv run pytest -p pytest_mock -v` or `make test`
+- Single test: `pytest tests/path/to/test_file.py::test_function_name`
+- Lint: `make lint` or `ruff check . --fix`
+- Type check: `make type-check` or `uv run pyright`
+- Format: `make format` or `uv run ruff format .`
+- Run all code checks: `make check` (runs lint, format, type-check, test)
+- Create db migration: `make migration m="Your migration message"`
+- Run development MCP Inspector: `make run-inspector`
+
+### Code Style Guidelines
+
+- Line length: 100 characters max
+- Python 3.12+ with full type annotations
+- Format with ruff (consistent styling)
+- Import order: standard lib, third-party, local imports
+- Naming: snake_case for functions/variables, PascalCase for classes
+- Prefer async patterns with SQLAlchemy 2.0
+- Use Pydantic v2 for data validation and schemas
+- CLI uses Typer for command structure
+- API uses FastAPI for endpoints
+- Follow the repository pattern for data access
+- Tools communicate to api routers via the httpx ASGI client (in process)
+
+### Codebase Architecture
+
+- `/alembic` - Alembic db migrations
+- `/api` - FastAPI implementation of REST endpoints
+- `/cli` - Typer command-line interface
+- `/markdown` - Markdown parsing and processing
+- `/mcp` - Model Context Protocol server implementation
+- `/models` - SQLAlchemy ORM models
+- `/repository` - Data access layer
+- `/schemas` - Pydantic models for validation
+- `/services` - Business logic layer
+- `/sync` - File synchronization services
+
+### Development Notes
+
+- MCP tools are defined in src/basic_memory/mcp/tools/
+- MCP prompts are defined in src/basic_memory/mcp/prompts/
+- MCP tools should be atomic, composable operations
+- Use `textwrap.dedent()` for multi-line string formatting in prompts and tools
+- MCP Prompts are used to invoke tools and format content with instructions for an LLM
+- Schema changes require Alembic migrations
+- SQLite is used for indexing and full text search, files are source of truth
+- Testing uses pytest with asyncio support (strict mode)
+- Test database uses in-memory SQLite
+- Avoid creating mocks in tests in most circumstances.
+- Each test runs in a standalone environment with in memory SQLite and tmp_file directory
+
+## BASIC MEMORY PRODUCT USAGE
+
+### Knowledge Structure
+
+- Entity: Any concept, document, or idea represented as a markdown file
+- Observation: A categorized fact about an entity (`- [category] content`)
+- Relation: A directional link between entities (`- relation_type [[Target]]`)
+- Frontmatter: YAML metadata at the top of markdown files
+- Knowledge representation follows precise markdown format:
+    - Observations with [category] prefixes
+    - Relations with WikiLinks [[Entity]]
+    - Frontmatter with metadata
+
+### Basic Memory Commands
+
+- Sync knowledge: `basic-memory sync` or `basic-memory sync --watch`
+- Import from Claude: `basic-memory import claude conversations`
+- Import from ChatGPT: `basic-memory import chatgpt`
+- Import from Memory JSON: `basic-memory import memory-json`
+- Check sync status: `basic-memory status`
+- Tool access: `basic-memory tools` (provides CLI access to MCP tools)
+    - Guide: `basic-memory tools basic-memory-guide`
+    - Continue: `basic-memory tools continue-conversation --topic="search"`
+
+### MCP Capabilities
+
+- Basic Memory exposes these MCP tools to LLMs:
+
+  **Content Management:**
+    - `write_note(title, content, folder, tags)` - Create/update markdown notes with semantic observations and relations
+    - `read_note(identifier, page, page_size)` - Read notes by title, permalink, or memory:// URL with knowledge graph
+      awareness
+    - `read_file(path)` - Read raw file content (text, images, binaries) without knowledge graph processing
+
+  **Knowledge Graph Navigation:**
+    - `build_context(url, depth, timeframe)` - Navigate the knowledge graph via memory:// URLs for conversation
+      continuity
+    - `recent_activity(type, depth, timeframe)` - Get recently updated information with specified timeframe (e.g., "
+      1d", "1 week")
+
+  **Search & Discovery:**
+    - `search(query, page, page_size)` - Full-text search across all content with filtering options
+
+  **Visualization:**
+    - `canvas(nodes, edges, title, folder)` - Generate Obsidian canvas files for knowledge graph visualization
+
+- MCP Prompts for better AI interaction:
+    - `ai_assistant_guide()` - Guidance on effectively using Basic Memory tools for AI assistants
+    - `continue_conversation(topic, timeframe)` - Continue previous conversations with relevant historical context
+    - `search(query, after_date)` - Search with detailed, formatted results for better context understanding
+    - `recent_activity(timeframe)` - View recently changed items with formatted output
+    - `json_canvas_spec()` - Full JSON Canvas specification for Obsidian visualization
+
+## AI-Human Collaborative Development
+
+Basic Memory emerged from and enables a new kind of development process that combines human and AI capabilities. Instead
+of using AI just for code generation, we've developed a true collaborative workflow:
+
+1. AI (LLM) writes initial implementation based on specifications and context
+2. Human reviews, runs tests, and commits code with any necessary adjustments
+3. Knowledge persists across conversations using Basic Memory's knowledge graph
+4. Development continues seamlessly across different AI sessions with consistent context
+5. Results improve through iterative collaboration and shared understanding
+
+This approach has allowed us to tackle more complex challenges and build a more robust system than either humans or AI
+could achieve independently.
+
+## GitHub Integration
+
+Basic Memory has taken AI-Human collaboration to the next level by integrating Claude directly into the development workflow through GitHub:
+
+### GitHub MCP Tools
+
+Using the GitHub Model Context Protocol server, Claude can now:
+
+- **Repository Management**:
+  - View repository files and structure
+  - Read file contents
+  - Create new branches
+  - Create and update files
+
+- **Issue Management**:
+  - Create new issues
+  - Comment on existing issues
+  - Close and update issues
+  - Search across issues
+
+- **Pull Request Workflow**:
+  - Create pull requests
+  - Review code changes
+  - Add comments to PRs
+
+This integration enables Claude to participate as a full team member in the development process, not just as a code generation tool. Claude's GitHub account ([bm-claudeai](https://github.com/bm-claudeai)) is a member of the Basic Machines organization with direct contributor access to the codebase.
+
+### Collaborative Development Process
+
+With GitHub integration, the development workflow includes:
+
+1. **Direct code review** - Claude can analyze PRs and provide detailed feedback
+2. **Contribution tracking** - All of Claude's contributions are properly attributed in the Git history
+3. **Branch management** - Claude can create feature branches for implementations
+4. **Documentation maintenance** - Claude can keep documentation updated as the code evolves
+
+This level of integration represents a new paradigm in AI-human collaboration, where the AI assistant becomes a full-fledged team member rather than just a tool for generating code snippets.
@@ -1,17 +1,204 @@
 # Contributing to Basic Memory

-Thank you for considering contributing to Basic Memory! Your help is greatly appreciated to improve this project.
+Thank you for considering contributing to Basic Memory! This document outlines the process for contributing to the
+project and how to get started as a developer.

-## How to Contribute
+## Getting Started

-1. **Fork the Repo**: Fork the repository and clone your copy.
-1. **Create a Branch**: Create a new branch for your feature or fix.
-1. **Test Your Changes**: Ensure tests pass locally and include new tests when necessary to ensure 100& test coverage.
-1. **Format Your Code**: Run `make format` to ensure code is formatted appropriately.
-4. **Submit a PR**: Submit a pull request with a detailed description of your changes.
+### Development Environment

-Thank You!
+1. **Clone the Repository**:
+   ```bash
+   git clone https://github.com/basicmachines-co/basic-memory.git
+   cd basic-memory
+   ```
+
+2. **Install Dependencies**:
+   ```bash
+   # Using just (recommended)
+   just install
+   
+   # Or using uv
+   uv install -e ".[dev]"
+   
+   # Or using pip
+   pip install -e ".[dev]"
+   ```
+
+   > **Note**: Basic Memory uses [just](https://just.systems) as a modern command runner. Install with `brew install just` or `cargo install just`.
+
+3. **Activate the Virtual Environment**
+   ```bash
+   source .venv/bin/activate
+   ```
+
+4. **Run the Tests**:
+   ```bash
+   # Run all tests
+   just test
+   # or
+   uv run pytest -p pytest_mock -v
+   
+   # Run a specific test
+   pytest tests/path/to/test_file.py::test_function_name
+   ```
+
+### Development Workflow
+
+1. **Fork the Repo**: Fork the repository on GitHub and clone your copy.
+2. **Create a Branch**: Create a new branch for your feature or fix.
+   ```bash
+   git checkout -b feature/your-feature-name
+   # or
+   git checkout -b fix/issue-you-are-fixing
+   ```
+3. **Make Your Changes**: Implement your changes with appropriate test coverage.
+4. **Check Code Quality**:
+   ```bash
+   # Run all checks at once
+   just check
+   
+   # Or run individual checks
+   just lint      # Run linting
+   just format    # Format code
+   just type-check  # Type checking
+   ```
+5. **Test Your Changes**: Ensure all tests pass locally and maintain 100% test coverage.
+   ```bash
+   just test
+   ```
+6. **Submit a PR**: Submit a pull request with a detailed description of your changes.
+
+## LLM-Assisted Development
+
+This project is designed for collaborative development between humans and LLMs (Large Language Models):
+
+1. **CLAUDE.md**: The repository includes a `CLAUDE.md` file that serves as a project guide for both humans and LLMs.
+   This file contains:
+    - Key project information and architectural overview
+    - Development commands and workflows
+    - Code style guidelines
+    - Documentation standards
+
+2. **AI-Human Collaborative Workflow**:
+    - We encourage using LLMs like Claude for code generation, reviews, and documentation
+    - When possible, save context in markdown files that can be referenced later
+    - This enables seamless knowledge transfer between different development sessions
+    - Claude can help with implementation details while you focus on architecture and design
+
+3. **Adding to CLAUDE.md**:
+    - If you discover useful project information or common commands, consider adding them to CLAUDE.md
+    - This helps all contributors (human and AI) maintain consistent knowledge of the project
+
+## Pull Request Process
+
+1. **Create a Pull Request**: Open a PR against the `main` branch with a clear title and description.
+2. **Sign the Developer Certificate of Origin (DCO)**: All contributions require signing our DCO, which certifies that
+   you have the right to submit your contributions. This will be automatically checked by our CLA assistant when you
+   create a PR.
+3. **PR Description**: Include:
+    - What the PR changes
+    - Why the change is needed
+    - How you tested the changes
+    - Any related issues (use "Fixes #123" to automatically close issues)
+4. **Code Review**: Wait for code review and address any feedback.
+5. **CI Checks**: Ensure all CI checks pass.
+6. **Merge**: Once approved, a maintainer will merge your PR.
+
+## Developer Certificate of Origin
+
+By contributing to this project, you agree to the [Developer Certificate of Origin (DCO)](CLA.md). This means you
+certify that:
+
+- You have the right to submit your contributions
+- You're not knowingly submitting code with patent or copyright issues
+- Your contributions are provided under the project's license (AGPL-3.0)
+
+This is a lightweight alternative to a Contributor License Agreement and helps ensure that all contributions can be
+properly incorporated into the project and potentially used in commercial applications.
+
+### Signing Your Commits
+
+Sign your commit:
+
+**Using the `-s` or `--signoff` flag**:
+
+```bash
+git commit -s -m "Your commit message"
+```
+
+This adds a `Signed-off-by` line to your commit message, certifying that you adhere to the DCO.
+
+The sign-off certifies that you have the right to submit your contribution under the project's license and verifies your
+agreement to the DCO.
+
+## Code Style Guidelines
+
+- **Python Version**: Python 3.12+ with full type annotations
+- **Line Length**: 100 characters maximum
+- **Formatting**: Use ruff for consistent styling
+- **Import Order**: Standard lib, third-party, local imports
+- **Naming**: Use snake_case for functions/variables, PascalCase for classes
+- **Documentation**: Add docstrings to public functions, classes, and methods
+- **Type Annotations**: Use type hints for all functions and methods
+
+## Testing Guidelines
+
+- **Coverage Target**: We aim for 100% test coverage for all code
+- **Test Framework**: Use pytest for unit and integration tests
+- **Mocking**: Use pytest-mock for mocking dependencies only when necessary
+- **Edge Cases**: Test both normal operation and edge cases
+- **Database Testing**: Use in-memory SQLite for testing database operations
+- **Fixtures**: Use async pytest fixtures for setup and teardown
+
+## Release Process
+
+Basic Memory uses automatic versioning based on git tags with `uv-dynamic-versioning`. Here's how releases work:
+
+### Version Management
+- **Development versions**: Automatically generated from git commits (e.g., `0.12.4.dev26+468a22f`)
+- **Beta releases**: Created by tagging with beta suffixes (e.g., `git tag v0.13.0b1`)
+- **Stable releases**: Created by tagging with version numbers (e.g., `git tag v0.13.0`)
+
+### Release Workflows
+
+#### Development Builds
+- Automatically published to PyPI on every commit to `main`
+- Version format: `0.12.4.dev26+468a22f` (base version + dev + commit count + hash)
+- Users install with: `pip install basic-memory --pre --force-reinstall`
+
+#### Beta Releases
+1. Create and push a beta tag: `git tag v0.13.0b1 && git push origin v0.13.0b1`
+2. GitHub Actions automatically builds and publishes to PyPI
+3. Users install with: `pip install basic-memory --pre`
+
+#### Stable Releases
+1. Create and push a version tag: `git tag v0.13.0 && git push origin v0.13.0`
+2. GitHub Actions automatically:
+   - Builds the package with version `0.13.0`
+   - Creates GitHub release with auto-generated notes
+   - Publishes to PyPI
+3. Users install with: `pip install basic-memory`
+
+### For Contributors
+- No manual version bumping required
+- Versions are automatically derived from git tags
+- Focus on code changes, not version management
+
+## Creating Issues
+
+If you're planning to work on something, please create an issue first to discuss the approach. Include:
+
+- A clear title and description
+- Steps to reproduce if reporting a bug
+- Expected behavior vs. actual behavior
+- Any relevant logs or screenshots
+- Your proposed solution, if you have one

 ## Code of Conduct

 All contributors must follow the [Code of Conduct](CODE_OF_CONDUCT.md).
+
+## Thank You!
+
+Your contributions help make Basic Memory better. We appreciate your time and effort!
@@ -0,0 +1,45 @@
+FROM python:3.12-slim-bookworm
+
+# Build arguments for user ID and group ID (defaults to 1000)
+ARG UID=1000
+ARG GID=1000
+
+# Copy uv from official image
+COPY --from=ghcr.io/astral-sh/uv:latest /uv /uvx /bin/
+
+# Set environment variables
+ENV PYTHONUNBUFFERED=1 \
+    PYTHONDONTWRITEBYTECODE=1
+
+# Create a group and user with the provided UID/GID
+# Check if the GID already exists, if not create appgroup
+RUN (getent group ${GID} || groupadd --gid ${GID} appgroup) && \
+    useradd --uid ${UID} --gid ${GID} --create-home --shell /bin/bash appuser
+
+# Copy the project into the image
+ADD . /app
+
+# Sync the project into a new environment, asserting the lockfile is up to date
+WORKDIR /app
+RUN uv sync --locked
+
+# Create necessary directories and set ownership
+RUN mkdir -p /app/data /app/.basic-memory && \
+    chown -R appuser:${GID} /app
+
+# Set default data directory and add venv to PATH
+ENV BASIC_MEMORY_HOME=/app/data \
+    PATH="/app/.venv/bin:$PATH"
+
+# Switch to the non-root user
+USER appuser
+
+# Expose port
+EXPOSE 8000
+
+# Health check
+HEALTHCHECK --interval=30s --timeout=10s --start-period=5s --retries=3 \
+    CMD basic-memory --version || exit 1
+
+# Use the basic-memory entrypoint to run the MCP server with default SSE transport
+CMD ["basic-memory", "mcp", "--transport", "sse", "--host", "0.0.0.0", "--port", "8000"]
@@ -0,0 +1,250 @@
+# Legal File Inventory Guide
+
+## Overview
+
+This guide documents the comprehensive file inventory script created for Basic Memory's legal documentation needs, including copyright assignments and company agreement exhibits.
+
+## Repository Analysis Summary
+
+### Repository Structure
+- **Primary Language**: Python (3,958 files)
+- **License**: GNU Affero General Public License v3.0
+- **Total Contributors**: 12 identified contributors
+- **Main Contributors**:
+  - `phernandez@basicmachines.co` / `paul@basicmachines.co` (Paul Hernandez) - 700+ commits
+  - `groksrc@gmail.com` / `groksrc@users.noreply.github.com` (Drew Cain) - 18+ commits
+  - Various AI bots and automated systems
+
+### File Type Distribution
+Based on the analysis, the repository contains:
+
+| Extension | Count | Purpose |
+|-----------|-------|---------|
+| `.py` | 3,958 | Python source code |
+| `.pyi` | 4,536 | Python type stubs (dependencies) |
+| `.pyc` | 1,435 | Compiled Python (excluded from inventory) |
+| `.md` | 34 | Documentation files |
+| `.toml` | 179 | Configuration files |
+| `.html` | 119 | Coverage reports and documentation |
+| `.txt` | 127 | Various text files |
+
+### Contributors by Email Domain
+
+**Basic Machines Contributors:**
+- `phernandez@basicmachines.co` - 547 commits (Primary maintainer)
+- `paul@basicmachines.co` / `paulmh@gmail.com` - 170 commits (Paul Hernandez)
+- `claude@basicmachines.co` - 3 commits (AI assistant)
+
+**External Contributors:**
+- `groksrc@gmail.com` / `groksrc@users.noreply.github.com` - 18 commits (Drew Cain)
+- Various one-time contributors (1-2 commits each)
+
+**Automated Systems:**
+- GitHub Actions, semantic-release, and other bots
+
+## Legal Inventory Script Features
+
+### What It Includes
+
+**Source Files:**
+- All Python source code (`.py` files)
+- Configuration files (`.toml`, `.yaml`, `.json`, etc.)
+- Documentation (`.md`, `.rst`, `.txt`)
+- Build and deployment scripts
+- Database migrations and SQL files
+- Legal and license files
+
+**Metadata for Each File:**
+- File path, size, and creation/modification dates
+- Git history (creation date, last modified, commit count)
+- Contributors and their line contributions
+- Primary author identification
+- File categorization
+- SHA-256 hash for integrity verification
+
+### What It Excludes
+
+**Generated/Build Artifacts:**
+- `__pycache__/` and `.pyc` files
+- Build directories (`build/`, `dist/`, `htmlcov/`)
+- Coverage reports and cache files
+
+**Dependencies:**
+- Virtual environment files (`.venv/`, `venv/`)
+- Third-party packages (`site-packages/`, `*.dist-info/`)
+- Lock files (`uv.lock`, `package-lock.json`)
+
+**IDE/Editor Files:**
+- `.idea/`, `.vscode/`, `.DS_Store`
+- Temporary and swap files
+
+**Version Control:**
+- `.git/` directory contents
+- Git configuration files
+
+## Usage Instructions
+
+### Basic Usage
+
+```bash
+# Generate CSV inventory (default)
+python3 legal_file_inventory.py
+
+# Generate Markdown report
+python3 legal_file_inventory.py --format markdown --output legal_report.md
+
+# Generate JSON with full metadata
+python3 legal_file_inventory.py --format json --output legal_data.json
+
+# Specify different repository path
+python3 legal_file_inventory.py --repo-path /path/to/repo --output inventory.csv
+```
+
+### Command Line Options
+
+- `--output`, `-o`: Output file path (default: `basic_memory_legal_inventory.csv`)
+- `--format`, `-f`: Output format - `csv`, `json`, or `markdown` (default: `csv`)
+- `--repo-path`, `-r`: Repository path (default: current directory)
+
+### Output Formats
+
+**CSV Format:**
+- Suitable for spreadsheet applications
+- Contains all metadata fields
+- Contributors stored as JSON string in separate column
+
+**JSON Format:**
+- Complete structured data
+- Includes summary statistics and detailed file information
+- Best for programmatic processing
+
+**Markdown Format:**
+- Human-readable report
+- Summary statistics and contributor rankings
+- Detailed table of all files
+
+## Legal Documentation Applications
+
+### Copyright Assignment Use Cases
+
+1. **Contributor Identification**: The script identifies all contributors to each file based on git blame analysis
+2. **Primary Author Recognition**: Determines the primary author of each file (contributor with most lines)
+3. **Contribution Metrics**: Provides line counts and commit counts per contributor
+4. **File Categorization**: Groups files by purpose (source code, documentation, configuration, etc.)
+
+### Company Agreement Exhibits
+
+The inventory provides comprehensive documentation of:
+
+1. **Intellectual Property Scope**: All source code files and their origins
+2. **Contributor Tracking**: Complete list of all individuals who have contributed code
+3. **File Integrity**: SHA-256 hashes for verification of file contents
+4. **Historical Documentation**: Git creation dates and modification history
+
+### Due Diligence Documentation
+
+The script generates data suitable for:
+
+1. **Legal Review**: Comprehensive file listing with contributor information
+2. **IP Audit**: Identification of all copyright holders
+3. **License Compliance**: Verification of file ownership and licensing
+4. **Asset Documentation**: Complete inventory of company code assets
+
+## Integration with Legal Processes
+
+### Recommended Workflow
+
+1. **Generate Inventory**: Run the script to create current file inventory
+2. **Legal Review**: Have legal counsel review the contributor list and file categorization
+3. **Copyright Assignment**: Use contributor data to ensure proper copyright assignments
+4. **Document Attachment**: Include inventory as exhibit in company agreements
+5. **Regular Updates**: Re-run inventory for significant releases or legal milestones
+
+### Key Legal Considerations
+
+**AGPL-3.0 License:**
+- All files are under AGPL-3.0 unless otherwise specified
+- Contributors retain copyright but license under AGPL-3.0 terms
+- Company needs proper copyright assignments for proprietary licensing
+
+**Contributor Rights:**
+- External contributors may retain rights to their contributions
+- Proper contributor license agreements (CLAs) should be in place
+- AI-generated content may have different legal status
+
+**File Categories for Legal Review:**
+- **Source Code**: Core IP, requires copyright assignment
+- **Configuration**: May contain proprietary deployment information
+- **Documentation**: Usually less sensitive but may contain trade secrets
+- **Legal/License**: Critical for compliance verification
+
+## Maintenance and Updates
+
+### When to Regenerate Inventory
+
+- Before major releases
+- During legal document preparation
+- After significant contributor additions
+- For annual compliance reviews
+- During acquisition or investment processes
+
+### Validation Steps
+
+1. Verify contributor email mapping is accurate
+2. Check that file categorization makes sense
+3. Ensure excluded files are appropriate
+4. Review contributor counts against expectations
+5. Validate file hashes for integrity
+
+## Technical Implementation Notes
+
+### Git Integration
+- Uses `git blame --line-porcelain` for detailed contributor analysis
+- Tracks file history with `git log --follow`
+- Handles renamed files and complex git histories
+
+### Performance Considerations
+- Scans repository incrementally to handle large codebases
+- Excludes binary dependencies to reduce processing time
+- Caches git operations where possible
+
+### Error Handling
+- Gracefully handles files not in git
+- Continues processing if individual files fail
+- Provides detailed error reporting
+
+## Security and Privacy
+
+### Data Sensitivity
+- Contains contributor names and email addresses
+- May reveal internal file structure and organization
+- Should be treated as confidential legal documentation
+
+### Recommended Handling
+- Limit access to legal and executive team
+- Store in secure, access-controlled systems
+- Consider redacting contributor emails for external sharing
+- Regular cleanup of generated inventory files
+
+## Troubleshooting
+
+### Common Issues
+
+**Git Not Available:**
+- Ensure git is installed and repository is initialized
+- Check that the script is run from within the repository
+
+**Permission Errors:**
+- Ensure read access to all repository files
+- Check write permissions for output directory
+
+**Large Repository Performance:**
+- Consider running on subsets of files for very large repositories
+- Use `--repo-path` to target specific subdirectories
+
+**Contributor Mapping Issues:**
+- Git usernames may not match real identities
+- Consider post-processing to normalize contributor names
+- Review .mailmap files for git identity consolidation
+
+This comprehensive legal file inventory system provides the foundation for proper intellectual property documentation and legal compliance for the Basic Memory project.
@@ -1,42 +0,0 @@
-.PHONY: install test lint clean format type-check installer-mac installer-win
-
-install:
-	pip install -e ".[dev]"
-
-test:
-	pytest -p pytest_mock -v
-
-lint:
-	ruff check . --fix
-
-type-check:
-	uv run pyright
-
-clean:
-	find . -type f -name '*.pyc' -delete
-	find . -type d -name '__pycache__' -exec rm -r {} +
-	rm -rf installer/build/
-	rm -rf installer/dist/
-	rm -f rw.*.dmg
-	rm -rf dist
-	rm -rf installer/build
-	rm -rf installer/dist
-	rm -f .coverage.*
-
-format:
-	uv run ruff format .
-
-# run inspector tool
-run-dev:
-	uv run mcp dev src/basic_memory/mcp/main.py
-
-# Build app installer
-installer-mac:
-	cd installer && uv run python setup.py bdist_mac
-
-installer-win:
-	cd installer && uv run python setup.py bdist_win32
-
-
-update-deps:
-	uv lock f--upgrade
@@ -1,258 +1,396 @@
+[![License: AGPL v3](https://img.shields.io/badge/License-AGPL_v3-blue.svg)](https://www.gnu.org/licenses/agpl-3.0)
+[![PyPI version](https://badge.fury.io/py/basic-memory.svg)](https://badge.fury.io/py/basic-memory)
+[![Python 3.12+](https://img.shields.io/badge/python-3.12+-blue.svg)](https://www.python.org/downloads/)
+[![Tests](https://github.com/basicmachines-co/basic-memory/workflows/Tests/badge.svg)](https://github.com/basicmachines-co/basic-memory/actions)
+[![Ruff](https://img.shields.io/endpoint?url=https://raw.githubusercontent.com/astral-sh/ruff/main/assets/badge/v2.json)](https://github.com/astral-sh/ruff)
+![](https://badge.mcpx.dev?type=server 'MCP Server')
+![](https://badge.mcpx.dev?type=dev 'MCP Dev')
+[![smithery badge](https://smithery.ai/badge/@basicmachines-co/basic-memory)](https://smithery.ai/server/@basicmachines-co/basic-memory)
+
 # Basic Memory

 Basic Memory lets you build persistent knowledge through natural conversations with Large Language Models (LLMs) like
-Claude, while keeping everything in simple markdown files on your computer. It uses the Model Context Protocol (MCP) to
+Claude, while keeping everything in simple Markdown files on your computer. It uses the Model Context Protocol (MCP) to
 enable any compatible LLM to read and write to your local knowledge base.

-## What is Basic Memory?
+- Website: https://basicmachines.co
+- Documentation: https://memory.basicmachines.co

-Most people use LLMs like calculators - paste in some text, expect to get an answer back, repeat. Each conversation
-starts fresh,
-and any knowledge or context is lost. Some try to work around this by:
+## Pick up your conversation right where you left off

- Saving chat histories (but they're hard to reference)
- Copying and pasting previous conversations (messy and repetitive)
- Using RAG systems to query documents (complex and often cloud-based)
+- AI assistants can load context from local files in a new conversation
+- Notes are saved locally as Markdown files in real time
+- No project knowledge or special prompting required

-Basic Memory takes a different approach by letting both humans and LLMs read and write knowledge naturally using
-standard markdown files. This means:
+https://github.com/user-attachments/assets/a55d8238-8dd0-454a-be4c-8860dbbd0ddc

- Your knowledge stays in files you control
- Both you and the LLM can read and write notes
- Context persists across conversations
- Context stays local and user controlled
-
-## How It Works in Practice
-
-Let's say you're working on a new project and want to capture design decisions. Here's how it works:
-
-1. Start by chatting normally:
-
-```markdown
-We need to design a new auth system, some key features:
-
- local first, don't delegate users to third party system
- support multiple platforms via jwt
- want to keep it simple but secure
-```
-
-... continue conversation.
-
-2. Ask Claude to help structure this knowledge:
-
-```
-"Lets write a note about the auth system design."
-```
-
-Claude creates a new markdown file on your system (which you can see instantly in Obsidian or your editor):
-
-```markdown
---
-title: Auth System Design
-permalink: auth-system-design
-tags
- design
- auth
---
-
-# Auth System Design
-
-## Observations
-
- [requirement] Local-first authentication without third party delegation
- [tech] JWT-based auth for cross-platform support
- [principle] Balance simplicity with security
-
-## Relations
-
- implements [[Security Requirements]]
- relates_to [[Platform Support]]
- referenced_by [[JWT Implementation]]
-```
-
-The note embeds semantic content (Observations) and links to other topics (Relations) via simple markdown formatting.
-
-3. You can edit this file directly in your editor in real time:
-
-```markdown
-# Auth System Design
-
-## Observations
-
- [requirement] Local-first authentication without third party delegation
- [tech] JWT-based auth for cross-platform support
- [principle] Balance simplicity with security
- [decision] Will use bcrypt for password hashing # Added by you
-
-## Relations
-
- implements [[Security Requirements]]
- relates_to [[Platform Support]]
- referenced_by [[JWT Implementation]]
- blocks [[User Service]]  # Added by you
-```
-
-4. In a new chat with Claude, you can reference this knowledge:
-
-```
-"Claude, look at memory://auth-system-design for context about our auth system"
-```
-
-Claude can now build rich context from the knowledge graph. For example:
-
-```
-Following relation 'implements [[Security Requirements]]':
- Found authentication best practices
- OWASP guidelines for JWT
- Rate limiting requirements
-
-Following relation 'relates_to [[Platform Support]]':
- Mobile auth requirements 
- Browser security considerations
- JWT storage strategies
-```
-
-Each related document can lead to more context, building a rich semantic understanding of your knowledge base. All of
-this context comes from standard markdown files that both humans and LLMs can read and write.
-
-Everything stays in local markdown files that you can:
-
- Edit in any text editor
- Version via git
- Back up normally
- Share when you want to
-
-## Technical Implementation
-
-Under the hood, Basic Memory:
-
-1. Stores everything in markdown files
-2. Uses a SQLite database just for searching and indexing
-3. Extracts semantic meaning from simple markdown patterns
-4. Maintains a local knowledge graph from file content
-
-The file format is just markdown with some simple markup:
-
-Frontmatter
-
- title
- type
- permalink
- optional metadata
-
-Observations
-
- facts about a topic
-
-```markdown
- [category] content #tag (optional context)
-```
-
-Relations
-
- links to other topics
-
-```markdown
- relation_type [[WikiLink]] (optional context)
-```
-
-Example:
-
-```markdown
---
-title: Note tile
-type: note
-permalink: unique/stable/id  # Added automatically
-tags
- tag1
- tag2
---
-
-# Note Title
-
-Regular markdown content...
-
-## Observations
-
- [category] Structured knowledge #tag (optional context)
- [idea] Another observation
-
-## Relations
-
- links_to [[Other Note]]
- implements [[Some Spec]]
-```
-
-Basic Memory will parse the markdown and derive the semantic relationships in the content. When you run
-`basic-memory sync`:
-
-1. New and changed files are detected
-2. Markdown patterns become semantic knowledge:
-
- `[tech]` becomes a categorized observation
- `[[WikiLink]]` creates a relation in the knowledge graph
- Tags and metadata are indexed for search
-
-3. A SQLite database maintains these relationships for fast querying
-4. Claude and other MCP-compatible LLMs can access this knowledge via memory:// URLs
-
-This creates a two-way flow where:
-
- Humans write and edit markdown files
- LLMs read and write through the MCP protocol
- Sync keeps everything consistent
- All knowledge stays in local files.
-
-## Using with Claude
-
-Basic Memory works with the Claude desktop app (https://claude.ai/):
-
-1. Install Basic Memory locally:
+## Quick Start

 ```bash
+# Install with uv (recommended)
+uv tool install basic-memory
+
+# Configure Claude Desktop (edit ~/Library/Application Support/Claude/claude_desktop_config.json)
+# Add this to your config:
 {
  "mcpServers": {
    "basic-memory": {
      "command": "uvx",
      "args": [
-        "basic-memory"
+        "basic-memory",
+        "mcp"
      ]
    }
+  }
+}
+# Now in Claude Desktop, you can:
+# - Write notes with "Create a note about coffee brewing methods"
+# - Read notes with "What do I know about pour over coffee?"
+# - Search with "Find information about Ethiopian beans"
+
+```
+
+You can view shared context via files in `~/basic-memory` (default directory location).
+
+### Alternative Installation via Smithery
+
+You can use [Smithery](https://smithery.ai/server/@basicmachines-co/basic-memory) to automatically configure Basic
+Memory for Claude Desktop:
+
+```bash
+npx -y @smithery/cli install @basicmachines-co/basic-memory --client claude
+```
+
+This installs and configures Basic Memory without requiring manual edits to the Claude Desktop configuration file. The
+Smithery server hosts the MCP server component, while your data remains stored locally as Markdown files.
+
+### Glama.ai
+
+<a href="https://glama.ai/mcp/servers/o90kttu9ym">
+  <img width="380" height="200" src="https://glama.ai/mcp/servers/o90kttu9ym/badge" alt="basic-memory MCP server" />
+</a>
+
+## Why Basic Memory?
+
+Most LLM interactions are ephemeral - you ask a question, get an answer, and everything is forgotten. Each conversation
+starts fresh, without the context or knowledge from previous ones. Current workarounds have limitations:
+
+- Chat histories capture conversations but aren't structured knowledge
+- RAG systems can query documents but don't let LLMs write back
+- Vector databases require complex setups and often live in the cloud
+- Knowledge graphs typically need specialized tools to maintain
+
+Basic Memory addresses these problems with a simple approach: structured Markdown files that both humans and LLMs can
+read
+and write to. The key advantages:
+
+- **Local-first:** All knowledge stays in files you control
+- **Bi-directional:** Both you and the LLM read and write to the same files
+- **Structured yet simple:** Uses familiar Markdown with semantic patterns
+- **Traversable knowledge graph:** LLMs can follow links between topics
+- **Standard formats:** Works with existing editors like Obsidian
+- **Lightweight infrastructure:** Just local files indexed in a local SQLite database
+
+With Basic Memory, you can:
+
+- Have conversations that build on previous knowledge
+- Create structured notes during natural conversations
+- Have conversations with LLMs that remember what you've discussed before
+- Navigate your knowledge graph semantically
+- Keep everything local and under your control
+- Use familiar tools like Obsidian to view and edit notes
+- Build a personal knowledge base that grows over time
+
+## How It Works in Practice
+
+Let's say you're exploring coffee brewing methods and want to capture your knowledge. Here's how it works:
+
+1. Start by chatting normally:
+
+```
+I've been experimenting with different coffee brewing methods. Key things I've learned:
+
+- Pour over gives more clarity in flavor than French press
+- Water temperature is critical - around 205°F seems best
+- Freshly ground beans make a huge difference
+```
+
+... continue conversation.
+
+2. Ask the LLM to help structure this knowledge:
+
+```
+"Let's write a note about coffee brewing methods."
+```
+
+LLM creates a new Markdown file on your system (which you can see instantly in Obsidian or your editor):
+
+```markdown
+---
+title: Coffee Brewing Methods
+permalink: coffee-brewing-methods
+tags:
+- coffee
+- brewing
+---
+
+# Coffee Brewing Methods
+
+## Observations
+
+- [method] Pour over provides more clarity and highlights subtle flavors
+- [technique] Water temperature at 205°F (96°C) extracts optimal compounds
+- [principle] Freshly ground beans preserve aromatics and flavor
+
+## Relations
+
+- relates_to [[Coffee Bean Origins]]
+- requires [[Proper Grinding Technique]]
+- affects [[Flavor Extraction]]
+```
+
+The note embeds semantic content and links to other topics via simple Markdown formatting.
+
+3. You see this file on your computer in real time in the current project directory (default `~/$HOME/basic-memory`).
+
+- Realtime sync can be enabled via running `basic-memory sync --watch`
+
+4. In a chat with the LLM, you can reference a topic:
+
+```
+Look at `coffee-brewing-methods` for context about pour over coffee
+```
+
+The LLM can now build rich context from the knowledge graph. For example:
+
+```
+Following relation 'relates_to [[Coffee Bean Origins]]':
+- Found information about Ethiopian Yirgacheffe
+- Notes on Colombian beans' nutty profile
+- Altitude effects on bean characteristics
+
+Following relation 'requires [[Proper Grinding Technique]]':
+- Burr vs. blade grinder comparisons
+- Grind size recommendations for different methods
+- Impact of consistent particle size on extraction
+```
+
+Each related document can lead to more context, building a rich semantic understanding of your knowledge base.
+
+This creates a two-way flow where:
+
+- Humans write and edit Markdown files
+- LLMs read and write through the MCP protocol
+- Sync keeps everything consistent
+- All knowledge stays in local files.
+
+## Technical Implementation
+
+Under the hood, Basic Memory:
+
+1. Stores everything in Markdown files
+2. Uses a SQLite database for searching and indexing
+3. Extracts semantic meaning from simple Markdown patterns
+    - Files become `Entity` objects
+    - Each `Entity` can have `Observations`, or facts associated with it
+    - `Relations` connect entities together to form the knowledge graph
+4. Maintains the local knowledge graph derived from the files
+5. Provides bidirectional synchronization between files and the knowledge graph
+6. Implements the Model Context Protocol (MCP) for AI integration
+7. Exposes tools that let AI assistants traverse and manipulate the knowledge graph
+8. Uses memory:// URLs to reference entities across tools and conversations
+
+The file format is just Markdown with some simple markup:
+
+Each Markdown file has:
+
+### Frontmatter
+
+```markdown
+title: <Entity title>
+type: <The type of Entity> (e.g. note)
+permalink: <a uri slug>
+
+- <optional metadata> (such as tags) 
+```
+
+### Observations
+
+Observations are facts about a topic.
+They can be added by creating a Markdown list with a special format that can reference a `category`, `tags` using a
+"#" character, and an optional `context`.
+
+Observation Markdown format:
+
+```markdown
+- [category] content #tag (optional context)
+```
+
+Examples of observations:
+
+```markdown
+- [method] Pour over extracts more floral notes than French press
+- [tip] Grind size should be medium-fine for pour over #brewing
+- [preference] Ethiopian beans have bright, fruity flavors (especially from Yirgacheffe)
+- [fact] Lighter roasts generally contain more caffeine than dark roasts
+- [experiment] Tried 1:15 coffee-to-water ratio with good results
+- [resource] James Hoffman's V60 technique on YouTube is excellent
+- [question] Does water temperature affect extraction of different compounds differently?
+- [note] My favorite local shop uses a 30-second bloom time
+```
+
+### Relations
+
+Relations are links to other topics. They define how entities connect in the knowledge graph.
+
+Markdown format:
+
+```markdown
+- relation_type [[WikiLink]] (optional context)
+```
+
+Examples of relations:
+
+```markdown
+- pairs_well_with [[Chocolate Desserts]]
+- grown_in [[Ethiopia]]
+- contrasts_with [[Tea Brewing Methods]]
+- requires [[Burr Grinder]]
+- improves_with [[Fresh Beans]]
+- relates_to [[Morning Routine]]
+- inspired_by [[Japanese Coffee Culture]]
+- documented_in [[Coffee Journal]]
+```
+
+## Using with VS Code
+
+Add the following JSON block to your User Settings (JSON) file in VS Code. You can do this by pressing `Ctrl + Shift + P` and typing `Preferences: Open User Settings (JSON)`.
+
+```json
+{
+  "mcp": {
+    "servers": {
+      "basic-memory": {
+        "command": "uvx",
+        "args": ["basic-memory", "mcp"]
+      }
+    }
+  }
 }
 ```

-2. Add to Claude Desktop:
+Optionally, you can add it to a file called `.vscode/mcp.json` in your workspace. This will allow you to share the configuration with others.

-```
-Basic Memory is available with these tools:
- write_note() for creating/updating notes
- read_note() for loading notes
- build_context() to load notes via memory:// URLs
- recent_activity() to find recently updated information
- search() to search infomation in the knowledge base
+```json
+{
+  "servers": {
+    "basic-memory": {
+      "command": "uvx",
+      "args": ["basic-memory", "mcp"]
+    }
+  }
+}
 ```

-3. Install via uv
+You can use Basic Memory with VS Code to easily retrieve and store information while coding.
+
+## Using with Claude Desktop
+
+Basic Memory is built using the MCP (Model Context Protocol) and works with the Claude desktop app (https://claude.ai/):
+
+1. Configure Claude Desktop to use Basic Memory:
+
+Edit your MCP configuration file (usually located at `~/Library/Application Support/Claude/claude_desktop_config.json`
+for OS X):
+
+```json
+{
+  "mcpServers": {
+    "basic-memory": {
+      "command": "uvx",
+      "args": [
+        "basic-memory",
+        "mcp"
+      ]
+    }
+  }
+}
+```
+
+If you want to use a specific project (see [Multiple Projects](#multiple-projects) below), update your Claude Desktop
+config:
+
+```json
+{
+  "mcpServers": {
+    "basic-memory": {
+      "command": "uvx",
+      "args": [
+        "basic-memory",
+        "mcp",
+        "--project",
+        "your-project-name"
+      ]
+    }
+  }
+}
+```
+
+2. Sync your knowledge:

 ```bash
-uv add  basic-memory
-
-# sync local knowledge updates
+# One-time sync of local knowledge updates
 basic-memory sync

-# run realtime sync process
+# Run realtime sync process (recommended)
 basic-memory sync --watch
 ```

-## Design Philosophy
+3. In Claude Desktop, the LLM can now use these tools:

-Basic Memory is built on some key ideas:
+```
+write_note(title, content, folder, tags) - Create or update notes
+read_note(identifier, page, page_size) - Read notes by title or permalink
+build_context(url, depth, timeframe) - Navigate knowledge graph via memory:// URLs
+search(query, page, page_size) - Search across your knowledge base
+recent_activity(type, depth, timeframe) - Find recently updated information
+canvas(nodes, edges, title, folder) - Generate knowledge visualizations
+```

- Your knowledge should stay in files you control
- Both humans and AI should use natural formats
- Simple text patterns can capture rich meaning
- Local-first doesn't mean feature-poor
+5. Example prompts to try:
+
+```
+"Create a note about our project architecture decisions"
+"Find information about JWT authentication in my notes"
+"Create a canvas visualization of my project components"
+"Read my notes on the authentication system"
+"What have I been working on in the past week?"
+```
+
+## Futher info
+
+See the [Documentation](https://memory.basicmachines.co/) for more info, including:
+
+- [Complete User Guide](https://memory.basicmachines.co/docs/user-guide)
+- [CLI tools](https://memory.basicmachines.co/docs/cli-reference)
+- [Managing multiple Projects](https://memory.basicmachines.co/docs/cli-reference#project)
+- [Importing data from OpenAI/Claude Projects](https://memory.basicmachines.co/docs/cli-reference#import)

 ## License

-AGPL-3.0
+AGPL-3.0
+
+Contributions are welcome. See the [Contributing](CONTRIBUTING.md) guide for info about setting up the project locally
+and submitting PRs.
+
+## Star History
+
+<a href="https://www.star-history.com/#basicmachines-co/basic-memory&Date">
+ <picture>
+   <source media="(prefers-color-scheme: dark)" srcset="https://api.star-history.com/svg?repos=basicmachines-co/basic-memory&type=Date&theme=dark" />
+   <source media="(prefers-color-scheme: light)" srcset="https://api.star-history.com/svg?repos=basicmachines-co/basic-memory&type=Date" />
+   <img alt="Star History Chart" src="https://api.star-history.com/svg?repos=basicmachines-co/basic-memory&type=Date" />
+ </picture>
+</a>
+
+Built with ♥️ by Basic Machines
@@ -0,0 +1,13 @@
+# Security Policy
+
+## Supported Versions
+
+| Version | Supported          |
+| ------- | ------------------ |
+| 0.x.x   | :white_check_mark: |
+
+## Reporting a Vulnerability
+
+Use this section to tell people how to report a vulnerability.
+
+If you find a vulnerability, please contact hello@basicmachines.co
@@ -0,0 +1,88 @@
+#!/usr/bin/env python3
+"""
+Create CSV exhibits for individual contributors
+"""
+
+import json
+import csv
+from pathlib import Path
+
+def create_csv_exhibits():
+    """Create CSV Exhibit A files for each contributor."""
+    
+    # Read the JSON inventory
+    inventory_files = list(Path("legal_inventory_main").glob("*.json"))
+    if not inventory_files:
+        print("Error: No JSON inventory files found")
+        return
+    
+    inventory_file = inventory_files[0]  # Use the most recent one
+    print(f"Using inventory file: {inventory_file}")
+    
+    with open(inventory_file, 'r') as f:
+        data = json.load(f)
+    
+    files = data['files']
+    
+    # Create output directory
+    output_dir = Path("legal_exhibits")
+    output_dir.mkdir(exist_ok=True)
+    
+    # Contributors we need exhibits for
+    target_contributors = {
+        'jope-bm': 'joe_exhibit_a.csv',
+        'Drew Cain': 'drew_cain_exhibit_a.csv'
+    }
+    
+    print("Creating CSV exhibits for contributors...")
+    
+    for contributor_key, filename in target_contributors.items():
+        # Find files for this contributor
+        contributor_files = []
+        
+        for file_info in files:
+            # Check if this contributor is listed in the file's contributors
+            for contrib in file_info.get('contributors', []):
+                if contributor_key in contrib['name']:
+                    contributor_files.append(file_info)
+                    break
+        
+        if not contributor_files:
+            print(f"No files found for {contributor_key}")
+            continue
+        
+        # Sort files by path
+        contributor_files.sort(key=lambda x: x['path'])
+        
+        # Create CSV file
+        csv_file = output_dir / filename
+        
+        with open(csv_file, 'w', newline='', encoding='utf-8') as csvfile:
+            fieldnames = [
+                'file_path', 'file_name', 'category', 'size_bytes', 
+                'modified_date', 'primary_author', 'all_contributors', 'sha256_hash'
+            ]
+            
+            writer = csv.DictWriter(csvfile, fieldnames=fieldnames)
+            writer.writeheader()
+            
+            for file_info in contributor_files:
+                contributors_list = '; '.join([c['name'] for c in file_info['contributors']])
+                
+                writer.writerow({
+                    'file_path': file_info['path'],
+                    'file_name': file_info['name'],
+                    'category': file_info['category'],
+                    'size_bytes': file_info['size_bytes'],
+                    'modified_date': file_info['modified_time'][:10],
+                    'primary_author': file_info['primary_author'],
+                    'all_contributors': contributors_list,
+                    'sha256_hash': file_info['sha256_hash']
+                })
+        
+        print(f"Created CSV exhibit for {contributor_key}: {csv_file}")
+        print(f"  - {len(contributor_files)} files")
+        print(f"  - {sum(f['size_bytes'] for f in contributor_files):,} bytes")
+
+if __name__ == '__main__':
+    create_csv_exhibits()
@@ -0,0 +1,208 @@
+#!/usr/bin/env python3
+"""
+Create individual Exhibit A files for copyright assignments
+"""
+
+import json
+from pathlib import Path
+from datetime import datetime
+
+def create_individual_exhibits():
+    """Create individual Exhibit A files for each contributor."""
+    
+    # Read the JSON inventory
+    inventory_file = Path("legal_inventory_main/basic_memory_inventory_20250730_101521.json")
+    
+    if not inventory_file.exists():
+        print(f"Error: {inventory_file} not found")
+        return
+    
+    with open(inventory_file, 'r') as f:
+        data = json.load(f)
+    
+    files = data['files']
+    
+    # Create output directory
+    output_dir = Path("legal_exhibits")
+    output_dir.mkdir(exist_ok=True)
+    
+    # Contributors we need exhibits for (based on copyright assignments)
+    target_contributors = {
+        'jope-bm': 'Joseph "Joe" [Last Name]',  # Need to get his full name
+        'Drew Cain': 'Drew Cain'
+    }
+    
+    print("Creating individual contributor exhibits...")
+    
+    for contributor_key, full_name in target_contributors.items():
+        # Find files for this contributor
+        contributor_files = []
+        
+        for file_info in files:
+            # Check if this contributor is listed in the file's contributors
+            for contrib in file_info.get('contributors', []):
+                if contributor_key in contrib['name']:
+                    contributor_files.append(file_info)
+                    break
+        
+        if not contributor_files:
+            print(f"No files found for {contributor_key}")
+            continue
+        
+        # Sort files by path
+        contributor_files.sort(key=lambda x: x['path'])
+        
+        # Create exhibit markdown
+        exhibit_content = f"""# Exhibit A - Assigned Works
+## Copyright Assignment: {full_name} to Basic Memory LLC
+
+**Date:** [To be filled]
+**Assignor:** {full_name}
+**Assignee:** Basic Memory LLC
+
+## Summary
+- **Total Files:** {len(contributor_files)}
+- **Total Size:** {sum(f['size_bytes'] for f in contributor_files):,} bytes
+- **Categories:** {', '.join(set(f['category'] for f in contributor_files))}
+
+## Detailed File List
+
+"""
+        
+        # Group by category
+        categories = {}
+        for file_info in contributor_files:
+            category = file_info['category']
+            if category not in categories:
+                categories[category] = []
+            categories[category].append(file_info)
+        
+        # Add files by category
+        for category, category_files in sorted(categories.items()):
+            exhibit_content += f"### {category.replace('_', ' ').title()}\n\n"
+            
+            for file_info in category_files:
+                exhibit_content += f"**{file_info['path']}**\n"
+                exhibit_content += f"- Size: {file_info['size_bytes']:,} bytes\n"
+                exhibit_content += f"- Modified: {file_info['modified_time'][:10]}\n"
+                exhibit_content += f"- Primary Author: {file_info['primary_author']}\n"
+                
+                # Show all contributors for this file
+                if len(file_info['contributors']) > 1:
+                    contributors_list = ', '.join([c['name'] for c in file_info['contributors']])
+                    exhibit_content += f"- All Contributors: {contributors_list}\n"
+                
+                exhibit_content += f"- SHA-256: `{file_info['sha256_hash']}`\n\n"
+        
+        # Add verification section
+        exhibit_content += f"""
+## Verification
+This exhibit lists all files in the Basic Memory repository where {full_name} is identified as a contributor based on git commit history analysis.
+
+**Analysis Date:** {datetime.now().strftime('%Y-%m-%d')}
+**Repository State:** Basic Memory main branch
+**Method:** Git history analysis via `git log --follow` for each file
+
+## Legal Representation
+{full_name} hereby represents and warrants that they are the author of the contributions listed above and have the right to assign copyright in these works to Basic Memory LLC.
+
+---
+
+*This exhibit is attached to and forms part of the Copyright Assignment Agreement between {full_name} and Basic Memory LLC.*
+"""
+        
+        # Write exhibit file
+        safe_name = contributor_key.replace(' ', '_').replace('-', '_').lower()
+        exhibit_file = output_dir / f"exhibit_a_{safe_name}.md"
+        
+        with open(exhibit_file, 'w') as f:
+            f.write(exhibit_content)
+        
+        print(f"Created exhibit for {full_name}: {exhibit_file}")
+        print(f"  - {len(contributor_files)} files")
+        print(f"  - {sum(f['size_bytes'] for f in contributor_files):,} bytes")
+    
+    # Create overall summary exhibit (for Paul's assignment to Basic Machines LLC)
+    create_overall_summary_exhibit(data, output_dir)
+
+def create_overall_summary_exhibit(data, output_dir):
+    """Create overall summary exhibit for Company Agreement."""
+    
+    files = data['files']
+    summary = data['summary']
+    contributors = data['contributors']
+    
+    summary_content = f"""# Basic Memory Repository - Complete IP Inventory
+## For Basic Memory LLC Company Agreement
+
+**Analysis Date:** {summary['scan_date'][:10]}
+**Repository:** {summary['repository_path']}
+
+## Executive Summary
+- **Total Files:** {summary['total_files']:,}
+- **Total Size:** {summary['total_size_bytes']:,} bytes
+- **Contributors:** {summary['contributor_count']}
+- **Primary Author:** Paul Hernandez ({len(contributors.get('Paul Hernandez', {}).get('files', []))} files)
+
+## File Categories
+"""
+    
+    for category, count in sorted(summary['categories'].items()):
+        summary_content += f"- **{category.replace('_', ' ').title()}:** {count} files\n"
+    
+    summary_content += """
+
+## Contributor Summary
+"""
+    
+    for contrib in summary['top_contributors']:
+        summary_content += f"- **{contrib['name']}** ({contrib['email']}): {contrib['file_count']} files, {contrib['commit_count']} commits\n"
+    
+    summary_content += """
+
+## Legal Significance
+This inventory represents the complete codebase of Basic Memory as licensed from Basic Machines LLC to Basic Memory LLC under the copyright license agreement dated [DATE].
+
+### IP Rights Chain
+1. **Paul Hernandez** → Basic Machines LLC (copyright assignment)
+2. **Basic Machines LLC** → Basic Memory LLC (15% royalty license)
+3. **Co-founders** → Basic Memory LLC (direct copyright assignments)
+
+### Due Diligence Documentation
+This comprehensive file inventory serves as:
+- **Company Agreement Exhibit:** Original codebase licensed to Basic Memory LLC
+- **Acquisition Documentation:** Complete IP inventory for due diligence
+- **Copyright Verification:** Establishes chain of title for all repository contents
+
+## Repository Contents by Category
+
+"""
+    
+    # Add sample files by category (first 10 in each category)
+    for category in sorted(summary['categories'].keys()):
+        category_files = [f for f in files if f['category'] == category][:10]
+        if category_files:
+            summary_content += f"### {category.replace('_', ' ').title()} (Sample)\n\n"
+            for file_info in category_files:
+                summary_content += f"- `{file_info['path']}` ({file_info['size_bytes']:,} bytes)\n"
+            
+            if len([f for f in files if f['category'] == category]) > 10:
+                remaining = len([f for f in files if f['category'] == category]) - 10
+                summary_content += f"- *... and {remaining} more files*\n"
+            summary_content += "\n"
+    
+    summary_content += f"""
+---
+
+*This inventory was generated automatically from git repository analysis and represents the complete intellectual property foundation of Basic Memory as of {summary['scan_date'][:10]}.*
+"""
+    
+    # Write summary file
+    summary_file = output_dir / "basic_memory_complete_inventory.md"
+    with open(summary_file, 'w') as f:
+        f.write(summary_content)
+    
+    print(f"Created complete inventory summary: {summary_file}")
+
+if __name__ == '__main__':
+    create_individual_exhibits()
@@ -0,0 +1,83 @@
+# Docker Compose configuration for Basic Memory
+# See docs/Docker.md for detailed setup instructions
+
+version: '3.8'
+
+services:
+  basic-memory:
+    # Use pre-built image (recommended for most users)
+    image: ghcr.io/basicmachines-co/basic-memory:latest
+    
+    # Uncomment to build locally instead:
+    # build: .
+    
+    container_name: basic-memory-server
+    
+    # Volume mounts for knowledge directories and persistent data
+    volumes:
+
+      # Persistent storage for configuration and database
+      - basic-memory-config:/root/.basic-memory:rw
+
+      # Mount your knowledge directory (required)
+      # Change './knowledge' to your actual Obsidian vault or knowledge directory
+      - ./knowledge:/app/data:rw
+
+      # OPTIONAL: Mount additional knowledge directories for multiple projects
+      # - ./work-notes:/app/data/work:rw
+      # - ./personal-notes:/app/data/personal:rw
+
+      # You can edit the project config manually in the mounted config volume
+      # The default project will be configured to use /app/data
+    environment:
+      # Project configuration
+      - BASIC_MEMORY_DEFAULT_PROJECT=main
+      
+      # Enable real-time file synchronization (recommended for Docker)
+      - BASIC_MEMORY_SYNC_CHANGES=true
+      
+      # Logging configuration
+      - BASIC_MEMORY_LOG_LEVEL=INFO
+      
+      # Sync delay in milliseconds (adjust for performance vs responsiveness)
+      - BASIC_MEMORY_SYNC_DELAY=1000
+    
+    # Port exposure for HTTP transport (only needed if not using STDIO)
+    ports:
+      - "8000:8000"
+    
+    # Command with SSE transport (configurable via environment variables above)
+    # IMPORTANT: The SSE and streamable-http endpoints are not secured
+    command: ["basic-memory", "mcp", "--transport", "sse", "--host", "0.0.0.0", "--port", "8000"]
+    
+    # Container management
+    restart: unless-stopped
+    
+    # Health monitoring
+    healthcheck:
+      test: ["CMD", "basic-memory", "--version"]
+      interval: 30s
+      timeout: 10s
+      retries: 3
+      start_period: 30s
+    
+    # Optional: Resource limits
+    # deploy:
+    #   resources:
+    #     limits:
+    #       memory: 512M
+    #       cpus: '0.5'
+    #     reservations:
+    #       memory: 256M
+    #       cpus: '0.25'
+
+volumes:
+  # Named volume for persistent configuration and database
+  # This ensures your configuration and knowledge graph persist across container restarts
+  basic-memory-config:
+    driver: local
+
+# Network configuration (optional)
+# networks:
+#   basic-memory-net:
+#     driver: bridge
@@ -0,0 +1,431 @@
+---
+title: AI Assistant Guide
+type: note
+permalink: docs/ai-assistant-guide
+---
+> Note: This is an optional document that can be copy/pasted into the project knowledge for an LLM to provide a full description of how it can work with Basic Memory. It is provided as a helpful resource. The tools contain extensive usage description prompts with enable the LLM to understand them. 
+
+You can [download](https://github.com/basicmachines-co/basic-memory/blob/main/docs/AI%20Assistant%20Guide.md) the contents of this file from GitHub
+# AI Assistant Guide for Basic Memory
+
+This guide helps you, the AI assistant, use Basic Memory tools effectively when working with users. It covers reading, writing, and navigating knowledge through the Model Context Protocol (MCP).
+
+## Quick Reference
+
+**Essential Tools:**
+- `write_note()` - Create/update notes (primary tool)
+- `read_note()` - Read existing content
+- `search_notes()` - Find information
+- `edit_note()` - Modify existing notes incrementally (v0.13.0)
+- `move_note()` - Organize files with database consistency (v0.13.0)
+
+**Project Management (v0.13.0):**
+- `list_projects()` - Show available projects
+- `switch_project()` - Change active project
+- `get_current_project()` - Current project info
+
+**Key Principles:**
+1. **Build connections** - Rich knowledge graphs > isolated notes
+2. **Ask permission** - "Would you like me to record this?"
+3. **Use exact titles** - For accurate `[[WikiLinks]]`
+4. **Leverage v0.13.0** - Edit incrementally, organize proactively, switch projects contextually
+
+## Overview
+
+Basic Memory allows you and users to record context in local Markdown files, building a rich knowledge base through natural conversations. The system automatically creates a semantic knowledge graph from simple text patterns.
+
+- **Local-First**: All data is stored in plain text files on the user's computer
+- **Real-Time**: Users see content updates immediately
+- **Bi-Directional**: Both you and users can read and edit notes
+- **Semantic**: Simple patterns create a structured knowledge graph
+- **Persistent**: Knowledge persists across sessions and conversations
+
+## The Importance of the Knowledge Graph
+
+Basic Memory's value comes from connections between notes, not just the notes themselves. When writing notes, your primary goal should be creating a rich, interconnected knowledge graph.
+
+When creating content, focus on:
+
+1. **Increasing Semantic Density**: Add multiple observations and relations to each note
+2. **Using Accurate References**: Aim to reference existing entities by their exact titles
+3. **Creating Forward References**: Feel free to reference entities that don't exist yet - Basic Memory will resolve these when they're created later
+4. **Creating Bidirectional Links**: When appropriate, connect entities from both directions
+5. **Using Meaningful Categories**: Add semantic context with appropriate observation categories
+6. **Choosing Precise Relations**: Use specific relation types that convey meaning
+
+Remember that a knowledge graph with 10 heavily connected notes is more valuable than 20 isolated notes. Your job is to help build these connections.
+
+## Core Tools Reference
+
+### Essential Content Management
+
+**Writing knowledge** (most important tool):
+```
+write_note(
+    title="Search Design",
+    content="# Search Design\n...",
+    folder="specs",                     # Optional
+    tags=["search", "design"],          # v0.13.0: now searchable!
+    project="work-notes"                # v0.13.0: target specific project
+)
+```
+
+**Reading knowledge:**
+```
+read_note("Search Design")              # By title
+read_note("specs/search-design")        # By path
+read_note("memory://specs/search")      # By memory URL
+```
+
+**Viewing notes as formatted artifacts (Claude Desktop):**
+```
+view_note("Search Design")              # Creates readable artifact
+view_note("specs/search-design")        # By permalink
+view_note("memory://specs/search")      # By memory URL
+```
+
+**Incremental editing** (v0.13.0):
+```
+edit_note(
+    identifier="Search Design",         # Must be EXACT title/permalink (strict matching)
+    operation="append",                 # append, prepend, find_replace, replace_section
+    content="\n## New Section\nContent here..."
+)
+```
+**⚠️ Important:** `edit_note` requires exact identifiers (no fuzzy matching). Use `search_notes()` first if uncertain.
+
+**File organization** (v0.13.0):
+```
+move_note(
+    identifier="Old Note",              # Must be EXACT title/permalink (strict matching)
+    destination="archive/old-note.md"   # Folders created automatically
+)
+```
+**⚠️ Important:** `move_note` requires exact identifiers (no fuzzy matching). Use `search_notes()` first if uncertain.
+
+### Project Management (v0.13.0)
+
+```
+list_projects()                         # Show available projects
+switch_project("work-notes")            # Change active project
+get_current_project()                   # Current project info
+```
+
+### Search & Discovery
+
+```
+search_notes("authentication system")   # v0.13.0: includes frontmatter tags
+build_context("memory://specs/search")  # Follow knowledge graph connections
+recent_activity(timeframe="1 week")     # Check what's been updated
+```
+
+## memory:// URLs Explained
+
+Basic Memory uses a special URL format to reference entities in the knowledge graph:
+
+- `memory://title` - Reference by title
+- `memory://folder/title` - Reference by folder and title 
+- `memory://permalink` - Reference by permalink
+- `memory://path/relation_type/*` - Follow all relations of a specific type
+- `memory://path/*/target` - Find all entities with relations to target
+
+## Semantic Markdown Format
+
+Knowledge is encoded in standard markdown using simple patterns:
+
+**Observations** - Facts about an entity:
+```markdown
+- [category] This is an observation #tag1 #tag2 (optional context)
+```
+
+**Relations** - Links between entities:
+```markdown
+- relation_type [[Target Entity]] (optional context)
+```
+
+**Common Categories & Relation Types:**
+- Categories: `[idea]`, `[decision]`, `[question]`, `[fact]`, `[requirement]`, `[technique]`, `[recipe]`, `[preference]`
+- Relations: `relates_to`, `implements`, `requires`, `extends`, `part_of`, `pairs_with`, `inspired_by`, `originated_from`
+
+## When to Record Context
+
+**Always consider recording context when**:
+
+1. Users make decisions or reach conclusions
+2. Important information emerges during conversation
+3. Multiple related topics are discussed
+4. The conversation contains information that might be useful later
+5. Plans, tasks, or action items are mentioned
+
+**Protocol for recording context**:
+
+1. Identify valuable information in the conversation
+2. Ask the user: "Would you like me to record our discussion about [topic] in Basic Memory?"
+3. If they agree, use `write_note` to capture the information
+4. If they decline, continue without recording
+5. Let the user know when information has been recorded: "I've saved our discussion about [topic] to Basic Memory."
+
+## Understanding User Interactions
+
+Users will interact with Basic Memory in patterns like:
+
+1. **Creating knowledge**:
+   ```
+   Human: "Let's write up what we discussed about search."
+   
+   You: I'll create a note capturing our discussion about the search functionality.
+   [Use write_note() to record the conversation details]
+   ```
+
+2. **Referencing existing knowledge**:
+   ```
+   Human: "Take a look at memory://specs/search"
+   
+   You: I'll examine that information.
+   [Use build_context() to gather related information]
+   [Then read_note() to access specific content]
+   ```
+
+3. **Finding information**:
+   ```
+   Human: "What were our decisions about auth?"
+   
+   You: Let me find that information for you.
+   [Use search_notes() to find relevant notes]
+   [Then build_context() to understand connections]
+   ```
+
+4. **Editing existing notes (v0.13.0)**:
+   ```
+   Human: "Add a section about deployment to my API documentation"
+   
+   You: I'll add that section to your existing documentation.
+   [Use edit_note() with operation="append" to add new content]
+   ```
+
+5. **Project management (v0.13.0)**:
+   ```
+   Human: "Switch to my work project and show recent activity"
+   
+   You: I'll switch to your work project and check what's been updated recently.
+   [Use switch_project() then recent_activity()]
+   ```
+
+6. **File organization (v0.13.0)**:
+   ```
+   Human: "Move my old meeting notes to the archive folder"
+   
+   You: I'll organize those notes for you.
+   [Use move_note() to relocate files with database consistency]
+   ```
+
+## Key Things to Remember
+
+1. **Files are Truth**
+   - All knowledge lives in local files on the user's computer
+   - Users can edit files outside your interaction
+   - Changes need to be synced by the user (usually automatic)
+   - Always verify information is current with `recent_activity()`
+
+2. **Building Context Effectively**
+   - Start with specific entities
+   - Follow meaningful relations
+   - Check recent changes
+   - Build context incrementally
+   - Combine related information
+
+3. **Writing Knowledge Wisely**
+   - Same title+folder overwrites existing notes
+   - Structure with clear headings and semantic markup
+   - Use tags for searchability (v0.13.0: frontmatter tags indexed)
+   - Keep files organized in logical folders
+
+4. **Leverage v0.13.0 Features**
+   - **Edit incrementally**: Use `edit_note()` for small changes vs rewriting
+   - **Switch projects**: Change context when user mentions different work areas
+   - **Organize proactively**: Move old content to archive folders
+   - **Cross-project operations**: Create notes in specific projects while maintaining context
+
+## Common Knowledge Patterns
+
+### Capturing Decisions
+
+```markdown
+---
+title: Coffee Brewing Methods
+tags: [coffee, brewing, pour-over, techniques]  # v0.13.0: Now searchable!
+---
+
+# Coffee Brewing Methods
+
+## Context
+I've experimented with various brewing methods including French press, pour over, and espresso.
+
+## Decision
+Pour over is my preferred method for light to medium roasts because it highlights subtle flavors and offers more control over the extraction.
+
+## Observations
+- [technique] Blooming the coffee grounds for 30 seconds improves extraction #brewing
+- [preference] Water temperature between 195-205°F works best #temperature
+- [equipment] Gooseneck kettle provides better control of water flow #tools
+- [timing] Total brew time of 3-4 minutes produces optimal extraction #process
+
+## Relations
+- pairs_with [[Light Roast Beans]]
+- contrasts_with [[French Press Method]]
+- requires [[Proper Grinding Technique]]
+- part_of [[Morning Coffee Routine]]
+```
+
+### Recording Project Structure
+
+```markdown
+# Garden Planning
+
+## Overview
+This document outlines the garden layout and planting strategy for this season.
+
+## Observations
+- [structure] Raised beds in south corner for sun exposure #layout
+- [structure] Drip irrigation system installed for efficiency #watering
+- [pattern] Companion planting used to deter pests naturally #technique
+
+## Relations
+- contains [[Vegetable Section]]
+- contains [[Herb Garden]]
+- implements [[Organic Gardening Principles]]
+```
+
+### Technical Discussions
+
+```markdown
+# Recipe Improvement Discussion
+
+## Key Points
+Discussed strategies for improving the chocolate chip cookie recipe.
+
+## Observations
+- [issue] Cookies spread too thin when baked at 350°F #texture
+- [solution] Chilling dough for 24 hours improves flavor and reduces spreading #technique
+- [decision] Will use brown butter instead of regular butter #flavor
+
+## Relations
+- improves [[Basic Cookie Recipe]]
+- inspired_by [[Bakery-Style Cookies]]
+- pairs_with [[Homemade Ice Cream]]
+```
+
+## v0.13.0 Workflow Examples
+
+### Multi-Project Conversations
+
+**User:** "I need to update my work documentation and also add a personal recipe note."
+
+**Workflow:**
+1. `list_projects()` - Check available projects
+2. `write_note(title="Sprint Planning", project="work-notes")` - Work content
+3. `write_note(title="Weekend Recipes", project="personal")` - Personal content
+
+### Incremental Note Building
+
+**User:** "Add a troubleshooting section to my setup guide."
+
+**Workflow:**
+1. `edit_note(identifier="Setup Guide", operation="append", content="\n## Troubleshooting\n...")`
+
+**User:** "Update the authentication section in my API docs."
+
+**Workflow:**
+1. `edit_note(identifier="API Documentation", operation="replace_section", section="## Authentication")`
+
+### Smart File Organization
+
+**User:** "My notes are getting messy in the main folder."
+
+**Workflow:**
+1. `move_note("Old Meeting Notes", "archive/2024/old-meetings.md")`
+2. `move_note("Project Notes", "projects/client-work/notes.md")`
+
+### Creating Effective Relations
+
+When creating relations:
+1. **Reference existing entities** by their exact title: `[[Exact Title]]`
+2. **Create forward references** to entities that don't exist yet - they'll be linked automatically when created
+3. **Search first** to find existing entities to reference
+4. **Use meaningful relation types**: `implements`, `requires`, `part_of` vs generic `relates_to`
+
+**Example workflow:**
+1. `search_notes("travel")` to find existing travel-related notes
+2. Reference found entities: `- part_of [[Japan Travel Guide]]`
+3. Add forward references: `- located_in [[Tokyo]]` (even if Tokyo note doesn't exist yet)
+
+## Common Issues & Solutions
+
+**Missing Content:**
+- Try `search_notes()` with broader terms if `read_note()` fails
+- Use fuzzy matching: search for partial titles
+
+**Forward References:**
+- These are normal! Basic Memory links them automatically when target notes are created
+- Inform users: "I've created forward references that will be linked when you create those notes"
+
+**Sync Issues:**
+- If information seems outdated, suggest `basic-memory sync`
+- Use `recent_activity()` to check if content is current
+
+**Strict Mode for Edit/Move Operations:**
+- `edit_note()` and `move_note()` require **exact identifiers** (no fuzzy matching for safety)
+- If identifier not found: use `search_notes()` first to find the exact title/permalink
+- Error messages will guide you to find correct identifiers
+- Example workflow:
+  ```
+  # ❌ This might fail if identifier isn't exact
+  edit_note("Meeting Note", "append", "content")
+  
+  # ✅ Safe approach: search first, then use exact result
+  results = search_notes("meeting")
+  edit_note("Meeting Notes 2024", "append", "content")  # Use exact title from search
+  ```
+
+## Best Practices
+
+1. **Proactively Record Context**
+   - Offer to capture important discussions
+   - Record decisions, rationales, and conclusions
+   - Link to related topics
+   - Ask for permission first: "Would you like me to save our discussion about [topic]?"
+   - Confirm when complete: "I've saved our discussion to Basic Memory"
+
+2. **Create a Rich Semantic Graph**
+   - **Add meaningful observations**: Include at least 3-5 categorized observations in each note
+   - **Create deliberate relations**: Connect each note to at least 2-3 related entities
+   - **Use existing entities**: Before creating a new relation, search for existing entities
+   - **Verify wikilinks**: When referencing `[[Entity]]`, use exact titles of existing notes
+   - **Check accuracy**: Use `search_notes()` or `recent_activity()` to confirm entity titles
+   - **Use precise relation types**: Choose specific relation types that convey meaning (e.g., "implements" instead of "relates_to")
+   - **Consider bidirectional relations**: When appropriate, create inverse relations in both entities
+
+3. **Structure Content Thoughtfully**
+   - Use clear, descriptive titles
+   - Organize with logical sections (Context, Decision, Implementation, etc.)
+   - Include relevant context and background
+   - Add semantic observations with appropriate categories
+   - Use a consistent format for similar types of notes
+   - Balance detail with conciseness
+
+4. **Navigate Knowledge Effectively**
+   - Start with specific searches
+   - Follow relation paths
+   - Combine information from multiple sources
+   - Verify information is current
+   - Build a complete picture before responding
+
+5. **Help Users Maintain Their Knowledge**
+   - Suggest organizing related topics
+   - Identify potential duplicates
+   - Recommend adding relations between topics
+   - Offer to create summaries of scattered information
+   - Suggest potential missing relations: "I notice this might relate to [topic], would you like me to add that connection?"
+
+
+Built with ♥️ by Basic Machines
@@ -0,0 +1,365 @@
+# Docker Setup Guide
+
+Basic Memory can be run in Docker containers to provide a consistent, isolated environment for your knowledge management
+system. This is particularly useful for integrating with existing Dockerized MCP servers or for deployment scenarios.
+
+## Quick Start
+
+### Option 1: Using Pre-built Images (Recommended)
+
+Basic Memory provides pre-built Docker images on GitHub Container Registry that are automatically updated with each release.
+
+1. **Use the official image directly:**
+   ```bash
+   docker run -d \
+     --name basic-memory-server \
+     -p 8000:8000 \
+     -v /path/to/your/obsidian-vault:/app/data:rw \
+     -v basic-memory-config:/app/.basic-memory:rw \
+     ghcr.io/basicmachines-co/basic-memory:latest
+   ```
+
+2. **Or use Docker Compose with the pre-built image:**
+   ```yaml
+   version: '3.8'
+   services:
+     basic-memory:
+       image: ghcr.io/basicmachines-co/basic-memory:latest
+       container_name: basic-memory-server
+       ports:
+         - "8000:8000"
+       volumes:
+         - /path/to/your/obsidian-vault:/app/data:rw
+         - basic-memory-config:/app/.basic-memory:rw
+       environment:
+         - BASIC_MEMORY_DEFAULT_PROJECT=main
+       restart: unless-stopped
+   ```
+
+### Option 2: Using Docker Compose (Building Locally)
+
+1. **Clone the repository:**
+   ```bash
+   git clone https://github.com/basicmachines-co/basic-memory.git
+   cd basic-memory
+   ```
+
+2. **Update the docker-compose.yml:**
+   Edit the volume mount to point to your Obsidian vault:
+   ```yaml
+   volumes:
+     # Change './obsidian-vault' to your actual directory path
+     - /path/to/your/obsidian-vault:/app/data:rw
+   ```
+
+3. **Start the container:**
+   ```bash
+   docker-compose up -d
+   ```
+
+### Option 3: Using Docker CLI
+
+```bash
+# Build the image
+docker build -t basic-memory .
+
+# Run with volume mounting
+docker run -d \
+  --name basic-memory-server \
+  -v /path/to/your/obsidian-vault:/app/data:rw \
+  -v basic-memory-config:/app/.basic-memory:rw \
+  -e BASIC_MEMORY_DEFAULT_PROJECT=main \
+  basic-memory
+```
+
+## Configuration
+
+### Volume Mounts
+
+Basic Memory requires several volume mounts for proper operation:
+
+1. **Knowledge Directory** (Required):
+   ```yaml
+   - /path/to/your/obsidian-vault:/app/data:rw
+   ```
+   Mount your Obsidian vault or knowledge base directory.
+
+2. **Configuration and Database** (Recommended):
+   ```yaml
+   - basic-memory-config:/app/.basic-memory:rw
+   ```
+   Persistent storage for configuration and SQLite database.
+
+You can edit the basic-memory config.json file located in the /app/.basic-memory/config.json after Basic Memory starts.
+
+3. **Multiple Projects** (Optional):
+   ```yaml
+   - /path/to/project1:/app/data/project1:rw
+   - /path/to/project2:/app/data/project2:rw
+   ```
+
+You can edit the basic-memory config.json file located in the /app/.basic-memory/config.json
+
+## CLI Commands via Docker
+
+You can run Basic Memory CLI commands inside the container using `docker exec`:
+
+### Basic Commands
+
+```bash
+# Check status
+docker exec basic-memory-server basic-memory status
+
+# Sync files
+docker exec basic-memory-server basic-memory sync
+
+# Show help
+docker exec basic-memory-server basic-memory --help
+```
+
+### Managing Projects with Volume Mounts
+
+When using Docker volumes, you'll need to configure projects to point to your mounted directories:
+
+1. **Check current configuration:**
+   ```bash
+   docker exec basic-memory-server cat /app/.basic-memory/config.json
+   ```
+
+2. **Add a project for your mounted volume:**
+   ```bash
+   # If you mounted /path/to/your/vault to /app/data
+   docker exec basic-memory-server basic-memory project create my-vault /app/data
+   
+   # Set it as default
+   docker exec basic-memory-server basic-memory project set-default my-vault
+   ```
+
+3. **Sync the new project:**
+   ```bash
+   docker exec basic-memory-server basic-memory sync
+   ```
+
+### Example: Setting up an Obsidian Vault
+
+If you mounted your Obsidian vault like this in docker-compose.yml:
+```yaml
+volumes:
+  - /Users/yourname/Documents/ObsidianVault:/app/data:rw
+```
+
+Then configure it:
+```bash
+# Create project pointing to mounted vault
+docker exec basic-memory-server basic-memory project create obsidian /app/data
+
+# Set as default
+docker exec basic-memory-server basic-memory project set-default obsidian
+
+# Sync to index all files
+docker exec basic-memory-server basic-memory sync
+```
+
+### Environment Variables
+
+Configure Basic Memory using environment variables:
+
+```yaml
+environment:
+
+  # Default project
+  - BASIC_MEMORY_DEFAULT_PROJECT=main
+
+  # Enable real-time sync
+  - BASIC_MEMORY_SYNC_CHANGES=true
+
+  # Logging level
+  - BASIC_MEMORY_LOG_LEVEL=INFO
+
+  # Sync delay in milliseconds
+  - BASIC_MEMORY_SYNC_DELAY=1000
+```
+
+## File Permissions
+
+### Linux/macOS
+
+The Docker container now runs as a non-root user to avoid file ownership issues. By default, the container uses UID/GID 1000, but you can customize this to match your user:
+
+```bash
+# Build with custom UID/GID to match your user
+docker build --build-arg UID=$(id -u) --build-arg GID=$(id -g) -t basic-memory .
+
+# Or use docker-compose with build args
+```
+
+**Example docker-compose.yml with custom user:**
+```yaml
+version: '3.8'
+services:
+  basic-memory:
+    build:
+      context: .
+      dockerfile: Dockerfile
+      args:
+        UID: 1000  # Replace with your UID
+        GID: 1000  # Replace with your GID
+    container_name: basic-memory-server
+    ports:
+      - "8000:8000"
+    volumes:
+      - /path/to/your/obsidian-vault:/app/data:rw
+      - basic-memory-config:/app/.basic-memory:rw
+    environment:
+      - BASIC_MEMORY_DEFAULT_PROJECT=main
+    restart: unless-stopped
+```
+
+**Using pre-built images:**
+If using the pre-built image from GitHub Container Registry, files will be created with UID/GID 1000. You can either:
+
+1. Change your local directory ownership to match:
+   ```bash
+   sudo chown -R 1000:1000 /path/to/your/obsidian-vault
+   ```
+
+2. Or build your own image with custom UID/GID as shown above.
+
+### Windows
+
+When using Docker Desktop on Windows, ensure the directories are shared:
+
+1. Open Docker Desktop
+2. Go to Settings → Resources → File Sharing
+3. Add your knowledge directory path
+4. Apply & Restart
+
+## Troubleshooting
+
+### Common Issues
+
+1. **File Watching Not Working:**
+    - Ensure volume mounts are read-write (`:rw`)
+    - Check directory permissions
+    - On Linux, may need to increase inotify limits:
+      ```bash
+      echo fs.inotify.max_user_watches=524288 | sudo tee -a /etc/sysctl.conf
+      sudo sysctl -p
+      ```
+
+2. **Configuration Not Persisting:**
+    - Use named volumes for `/app/.basic-memory`
+    - Check volume mount permissions
+
+3. **Network Connectivity:**
+    - For HTTP transport, ensure port 8000 is exposed
+    - Check firewall settings
+
+### Debug Mode
+
+Run with debug logging:
+
+```yaml
+environment:
+  - BASIC_MEMORY_LOG_LEVEL=DEBUG
+```
+
+View logs:
+
+```bash
+docker-compose logs -f basic-memory
+```
+
+
+## Security Considerations
+
+1. **Docker Security:**
+   The container runs as a non-root user (UID/GID 1000 by default) for improved security. You can customize the user ID using build arguments to match your local user.
+
+2. **Volume Permissions:**
+   Ensure mounted directories have appropriate permissions and don't expose sensitive data. With the non-root container, files will be created with the specified user ownership.
+
+3. **Network Security:**
+   If using HTTP transport, consider using reverse proxy with SSL/TLS and authentication if the endpoint is available on
+   a network.
+
+4. **IMPORTANT:** The HTTP endpoints have no authorization. They should not be exposed on a public network.  
+
+## Integration Examples
+
+### Claude Desktop with Docker
+
+The recommended way to connect Claude Desktop to the containerized Basic Memory is using `mcp-proxy`, which converts the HTTP transport to STDIO that Claude Desktop expects:
+
+1. **Start the Docker container:**
+   ```bash
+   docker-compose up -d
+   ```
+
+2. **Configure Claude Desktop** to use mcp-proxy:
+   ```json
+   {
+     "mcpServers": {
+       "basic-memory": {
+         "command": "uvx",
+         "args": [
+           "mcp-proxy",
+           "http://localhost:8000/mcp"
+         ]
+       }
+     }
+   }
+   ```
+
+
+## Support
+
+For Docker-specific issues:
+
+1. Check the [troubleshooting section](#troubleshooting) above
+2. Review container logs: `docker-compose logs basic-memory`
+3. Verify volume mounts: `docker inspect basic-memory-server`
+4. Test file permissions: `docker exec basic-memory-server ls -la /app`
+
+For general Basic Memory support, see the main [README](../README.md)
+and [documentation](https://memory.basicmachines.co/).
+
+## GitHub Container Registry Images
+
+### Available Images
+
+Pre-built Docker images are available on GitHub Container Registry at [`ghcr.io/basicmachines-co/basic-memory`](https://github.com/basicmachines-co/basic-memory/pkgs/container/basic-memory).
+
+**Supported architectures:**
+- `linux/amd64` (Intel/AMD x64)
+- `linux/arm64` (ARM64, including Apple Silicon)
+
+**Available tags:**
+- `latest` - Latest stable release
+- `v0.13.8`, `v0.13.7`, etc. - Specific version tags
+- `v0.13`, `v0.12`, etc. - Major.minor tags
+
+### Automated Builds
+
+Docker images are automatically built and published when new releases are tagged:
+
+1. **Release Process:** When a git tag matching `v*` (e.g., `v0.13.8`) is pushed, the CI workflow automatically:
+   - Builds multi-platform Docker images
+   - Pushes to GitHub Container Registry with appropriate tags
+   - Uses native GitHub integration for seamless publishing
+
+2. **CI/CD Pipeline:** The Docker workflow includes:
+   - Multi-platform builds (AMD64 and ARM64)
+   - Layer caching for faster builds
+   - Automatic tagging with semantic versioning
+   - Security scanning and optimization
+
+### Setup Requirements (For Maintainers)
+
+GitHub Container Registry integration is automatic for this repository:
+
+1. **No external setup required** - GHCR is natively integrated with GitHub
+2. **Automatic permissions** - Uses `GITHUB_TOKEN` with `packages: write` permission
+3. **Public by default** - Images are automatically public for public repositories
+
+The Docker CI workflow (`.github/workflows/docker.yml`) handles everything automatically when version tags are pushed.
@@ -0,0 +1,241 @@
+# Character Handling and Conflict Resolution
+
+Basic Memory handles various character encoding scenarios and file naming conventions to provide consistent permalink generation and conflict resolution. This document explains how the system works and how to resolve common character-related issues.
+
+## Overview
+
+Basic Memory uses a sophisticated system to generate permalinks from file paths while maintaining consistency across different operating systems and character encodings. The system normalizes file paths and generates unique permalinks to prevent conflicts.
+
+## Character Normalization Rules
+
+### 1. Permalink Generation
+
+When Basic Memory processes a file path, it applies these normalization rules:
+
+```
+Original: "Finance/My Investment Strategy.md"
+Permalink: "finance/my-investment-strategy"
+```
+
+**Transformation process:**
+1. Remove file extension (`.md`)
+2. Convert to lowercase (case-insensitive)
+3. Replace spaces with hyphens
+4. Replace underscores with hyphens
+5. Handle international characters (transliteration for Latin, preservation for non-Latin)
+6. Convert camelCase to kebab-case
+
+### 2. International Character Support
+
+**Latin characters with diacritics** are transliterated:
+- `ø` → `o` (Søren → soren)
+- `ü` → `u` (Müller → muller)
+- `é` → `e` (Café → cafe)
+- `ñ` → `n` (Niño → nino)
+
+**Non-Latin characters** are preserved:
+- Chinese: `中文/测试文档.md` → `中文/测试文档`
+- Japanese: `日本語/文書.md` → `日本語/文書`
+
+## Common Conflict Scenarios
+
+### 1. Hyphen vs Space Conflicts
+
+**Problem:** Files with existing hyphens conflict with generated permalinks from spaces.
+
+**Example:**
+```
+File 1: "basic memory bug.md"     → permalink: "basic-memory-bug"
+File 2: "basic-memory-bug.md"    → permalink: "basic-memory-bug" (CONFLICT!)
+```
+
+**Resolution:** The system automatically resolves this by adding suffixes:
+```
+File 1: "basic memory bug.md"     → permalink: "basic-memory-bug"
+File 2: "basic-memory-bug.md"    → permalink: "basic-memory-bug-1"
+```
+
+**Best Practice:** Choose consistent naming conventions within your project.
+
+### 2. Case Sensitivity Conflicts
+
+**Problem:** Different case variations that normalize to the same permalink.
+
+**Example on macOS:**
+```
+Directory: Finance/investment.md
+Directory: finance/investment.md  (different on filesystem, same permalink)
+```
+
+**Resolution:** Basic Memory detects case conflicts and prevents them during sync operations with helpful error messages.
+
+**Best Practice:** Use consistent casing for directory and file names.
+
+### 3. Character Encoding Conflicts
+
+**Problem:** Different Unicode normalizations of the same logical character.
+
+**Example:**
+```
+File 1: "café.md" (é as single character)
+File 2: "café.md" (e + combining accent)
+```
+
+**Resolution:** Basic Memory normalizes Unicode characters using NFD normalization to detect these conflicts.
+
+### 4. Forward Slash Conflicts
+
+**Problem:** Forward slashes in frontmatter or file names interpreted as path separators.
+
+**Example:**
+```yaml
+---
+permalink: finance/investment/strategy
+---
+```
+
+**Resolution:** Basic Memory validates frontmatter permalinks and warns about path separator conflicts.
+
+## Error Messages and Troubleshooting
+
+### "UNIQUE constraint failed: entity.file_path, entity.project_id"
+
+**Cause:** Two entities trying to use the same file path within a project.
+
+**Common scenarios:**
+1. File move operation where destination is already occupied
+2. Case sensitivity differences on macOS
+3. Character encoding conflicts
+4. Concurrent file operations
+
+**Resolution steps:**
+1. Check for duplicate file names with different cases
+2. Look for files with similar names but different character encodings
+3. Rename conflicting files to have unique names
+4. Run sync again after resolving conflicts
+
+### "File path conflict detected during move"
+
+**Cause:** Enhanced conflict detection preventing potential database integrity violations.
+
+**What this means:** The system detected that moving a file would create a conflict before attempting the database operation.
+
+**Resolution:** Follow the specific guidance in the error message, which will indicate the type of conflict detected.
+
+## Best Practices
+
+### 1. File Naming Conventions
+
+**Recommended patterns:**
+- Use consistent casing (prefer lowercase)
+- Use hyphens instead of spaces for multi-word files
+- Avoid special characters that could conflict with path separators
+- Be consistent with directory structure casing
+
+**Examples:**
+```
+✅ Good:
+- finance/investment-strategy.md
+- projects/basic-memory-features.md
+- docs/api-reference.md
+
+❌ Problematic:
+- Finance/Investment Strategy.md  (mixed case, spaces)
+- finance/Investment Strategy.md  (inconsistent case)
+- docs/API/Reference.md          (mixed case directories)
+```
+
+### 2. Permalink Management
+
+**Custom permalinks in frontmatter:**
+```yaml
+---
+type: knowledge
+permalink: custom-permalink-name
+---
+```
+
+**Guidelines:**
+- Use lowercase permalinks
+- Use hyphens for word separation
+- Avoid path separators unless creating sub-paths
+- Ensure uniqueness within your project
+
+### 3. Directory Structure
+
+**Consistent casing:**
+```
+✅ Good:
+finance/
+  investment-strategies.md
+  portfolio-management.md
+
+❌ Problematic:  
+Finance/           (capital F)
+  investment-strategies.md
+finance/           (lowercase f) 
+  portfolio-management.md
+```
+
+## Migration and Cleanup
+
+### Identifying Conflicts
+
+Use Basic Memory's built-in conflict detection:
+
+```bash
+# Sync will report conflicts
+basic-memory sync
+
+# Check sync status for warnings
+basic-memory status
+```
+
+### Resolving Existing Conflicts
+
+1. **Identify conflicting files** from sync error messages
+2. **Choose consistent naming convention** for your project
+3. **Rename files** to follow the convention
+4. **Re-run sync** to verify resolution
+
+### Bulk Renaming Strategy
+
+For projects with many conflicts:
+
+1. **Backup your project** before making changes
+2. **Standardize on lowercase** file and directory names
+3. **Replace spaces with hyphens** in file names
+4. **Use consistent character encoding** (UTF-8)
+5. **Test sync after each batch** of changes
+
+## System Enhancements
+
+### Recent Improvements (v0.13+)
+
+1. **Enhanced conflict detection** before database operations
+2. **Improved error messages** with specific resolution guidance
+3. **Character normalization utilities** for consistent handling
+4. **File swap detection** for complex move scenarios
+5. **Proactive conflict warnings** during permalink resolution
+
+### Monitoring and Logging
+
+The system now provides detailed logging for conflict resolution:
+
+```
+DEBUG: Detected potential file path conflicts for 'Finance/Investment.md': ['finance/investment.md']
+WARNING: File path conflict detected during move: entity_id=123 trying to move from 'old.md' to 'new.md'
+```
+
+These logs help identify and resolve conflicts before they cause sync failures.
+
+## Support and Resources
+
+If you encounter character-related conflicts not covered in this guide:
+
+1. **Check the logs** for specific conflict details
+2. **Review error messages** for resolution guidance  
+3. **Report issues** with examples of the conflicting files
+4. **Consider the file naming best practices** outlined above
+
+The Basic Memory system is designed to handle most character conflicts automatically while providing clear guidance for manual resolution when needed.
@@ -1,16 +0,0 @@
-# Basic Memory Installer
-
-This installer configures Basic Memory to work with Claude Desktop.
-
-## Installation
-
-1. Download the latest installer from the [releases page](https://github.com/basicmachines-co/basic-memory/releases)
-2. Unzip the downloaded file
-3. Since the app is currently unsigned, you'll need to:
-   - Right-click (or Control-click) the app
-   - Select "Open" from the context menu
-   - Click "Open" in the warning dialog
-4. Follow the installation instructions
-5. Restart Claude Desktop
-
-The warning only appears the first time you open the app. Future updates will include proper code signing.
@@ -1,64 +0,0 @@
-<?xml version="1.0" encoding="UTF-8"?>
-<svg viewBox="0 0 512 512" xmlns="http://www.w3.org/2000/svg">
-  <!-- Background -->
-  <rect x="0" y="0" width="512" height="512" rx="64" fill="#111111"/>
-
-  <!-- Define arrowhead marker -->
-  <defs>
-    <marker id="arrowhead" 
-            markerWidth="10" 
-            markerHeight="10" 
-            refX="8" 
-            refY="5"
-            orient="auto">
-      <path d="M 0 0 L 10 5 L 0 10 Z" 
-            fill="#00cc00"/>
-    </marker>
-  </defs>
-  
-  <!-- State 1 (initial) -->
-  <circle cx="156" cy="256" r="30" fill="none" stroke="#00cc00" stroke-width="3"/>
-  
-  <!-- State 2 (accept) -->
-  <circle cx="356" cy="176" r="34" fill="none" stroke="#00cc00" stroke-width="3"/>
-  <circle cx="356" cy="176" r="28" fill="none" stroke="#00cc00" stroke-width="3"/>
-  
-  <!-- State 3 (accept) -->
-  <circle cx="356" cy="336" r="34" fill="none" stroke="#00cc00" stroke-width="3"/>
-  <circle cx="356" cy="336" r="28" fill="none" stroke="#00cc00" stroke-width="3"/>
-
-  <!-- Initial arrow -->
-  <path d="M 96 256 L 126 256" 
-        stroke="#00cc00" stroke-width="3" fill="none"
-        marker-end="url(#arrowhead)"/>
-
-  <!-- State transitions -->
-  <!-- 1 -> 2 -->
-  <path d="M 180 240
-           Q 260 200, 320 176" 
-        stroke="#00cc00" stroke-width="3" fill="none"
-        marker-end="url(#arrowhead)"/>
-        
-  <!-- 1 -> 3 -->
-  <path d="M 180 272
-           Q 260 312, 320 336" 
-        stroke="#00cc00" stroke-width="3" fill="none"
-        marker-end="url(#arrowhead)"/>
-
-  <!-- Self loops -->
-  <path d="M 356 142
-           Q 396 142, 396 176
-           Q 396 210, 356 210
-           Q 316 210, 316 176
-           Q 316 142, 356 142" 
-        stroke="#00cc00" stroke-width="2" fill="none"
-        marker-end="url(#arrowhead)"/>
-        
-  <path d="M 356 302
-           Q 396 302, 396 336
-           Q 396 370, 356 370
-           Q 316 370, 316 336
-           Q 316 302, 356 302" 
-        stroke="#00cc00" stroke-width="2" fill="none"
-        marker-end="url(#arrowhead)"/>
-</svg>
@@ -1,89 +0,0 @@
-import json
-import subprocess
-import sys
-from pathlib import Path
-
-# Use tkinter for GUI alerts on macOS
-if sys.platform == "darwin":
-    import tkinter as tk
-    from tkinter import messagebox
-
-def ensure_uv_installed():
-    """Check if uv is installed, install if not."""
-    try:
-        subprocess.run(["uv", "--version"], capture_output=True, check=True)
-    except (subprocess.CalledProcessError, FileNotFoundError):
-        print("Installing uv package manager...")
-        subprocess.run(
-            [
-                "curl",
-                "-LsSf",
-                "https://astral.sh/uv/install.sh",
-                "|",
-                "sh",
-            ],
-            shell=True,
-        )
-
-
-def get_config_path():
-    """Get Claude Desktop config path for current platform."""
-    if sys.platform == "darwin":
-        return Path.home() / "Library/Application Support/Claude/claude_desktop_config.json"
-    elif sys.platform == "win32":
-        return Path.home() / "AppData/Roaming/Claude/claude_desktop_config.json"
-    else:
-        raise RuntimeError(f"Unsupported platform: {sys.platform}")
-
-
-def update_claude_config():
-    """Update Claude Desktop config to include basic-memory."""
-    config_path = get_config_path()
-    config_path.parent.mkdir(parents=True, exist_ok=True)
-
-    # Load existing config or create new
-    if config_path.exists():
-        config = json.loads(config_path.read_text())
-    else:
-        config = {"mcpServers": {}}
-
-    # Add/update basic-memory config
-    config["mcpServers"]["basic-memory"] = {"command": "uvx", "args": ["basic-memory", "mcp"]}
-
-    # Write back config
-    config_path.write_text(json.dumps(config, indent=2))
-
-
-def print_completion_message():
-    """Show completion message with helpful tips."""
-    message = """Installation complete! Basic Memory is now available in Claude Desktop.
-
-Please restart Claude Desktop for changes to take effect.
-
-Quick Start:
-1. You can run sync directly using: uvx basic-memory sync
-2. Optionally, install globally with: uv pip install basic-memory
-
-Built with ♥️ by Basic Machines."""
-
-    if sys.platform == "darwin":
-        # Show GUI message on macOS
-        root = tk.Tk()
-        root.withdraw()  # Hide the main window
-        messagebox.showinfo("Basic Memory", message)
-        root.destroy()
-    else:
-        # Fallback to console output
-        print(message)
-
-
-def main():
-    print("Welcome to Basic Memory installer")
-    ensure_uv_installed()
-    print("Configuring Claude Desktop...")
-    update_claude_config()
-    print_completion_message()
-
-
-if __name__ == "__main__":
-    main()
@@ -1,27 +0,0 @@
-#!/bin/bash
-
-# Convert SVG to PNG at various required sizes
-rsvg-convert -h 16 -w 16 icon.svg > icon_16x16.png
-rsvg-convert -h 32 -w 32 icon.svg > icon_32x32.png
-rsvg-convert -h 128 -w 128 icon.svg > icon_128x128.png
-rsvg-convert -h 256 -w 256 icon.svg > icon_256x256.png
-rsvg-convert -h 512 -w 512 icon.svg > icon_512x512.png
-
-# Create iconset directory
-mkdir -p Basic.iconset
-
-# Move files into iconset with Mac-specific names
-cp icon_16x16.png Basic.iconset/icon_16x16.png
-cp icon_32x32.png Basic.iconset/icon_16x16@2x.png
-cp icon_32x32.png Basic.iconset/icon_32x32.png
-cp icon_128x128.png Basic.iconset/icon_32x32@2x.png
-cp icon_256x256.png Basic.iconset/icon_128x128.png
-cp icon_512x512.png Basic.iconset/icon_256x256.png
-cp icon_512x512.png Basic.iconset/icon_512x512.png
-
-# Convert iconset to icns
-iconutil -c icns Basic.iconset
-
-# Clean up
-rm -rf Basic.iconset
-rm icon_*.png
@@ -1,42 +0,0 @@
-from cx_Freeze import setup, Executable
-import sys
-
-# Build options for all platforms
-build_exe_options = {
-    "packages": ["json", "pathlib"],
-    "excludes": [],
-}
-
-# Platform-specific options
-if sys.platform == "win32":
-    base = "Win32GUI"  # Use GUI base for Windows
-    build_exe_options.update({
-        "include_msvcr": True,
-    })
-    target_name = "Basic Memory Installer.exe"
-else:  # darwin
-    base = None  # Don't use GUI base for macOS
-    target_name = "Basic Memory Installer"
-
-executables = [
-    Executable(
-        script="installer.py",
-        target_name=target_name,
-        base=base,
-        icon="Basic.icns"
-    )
-]
-
-setup(
-    name="basic-memory",
-    version=open("../pyproject.toml").read().split('version = "', 1)[1].split('"', 1)[0],
-    description="Basic Memory - Local-first knowledge management",
-    options={
-        "build_exe": build_exe_options,
-        "bdist_mac": {
-            "bundle_name": "Basic Memory Installer",
-            "iconfile": "Basic.icns"
-        }
-    },
-    executables=executables,
-)
@@ -0,0 +1,185 @@
+# Basic Memory - Modern Command Runner
+
+# Install dependencies
+install:
+    pip install -e ".[dev]"
+    uv sync
+    @echo ""
+    @echo "💡 Remember to activate the virtual environment by running: source .venv/bin/activate"
+
+# Run unit tests in parallel
+test-unit:
+    uv run pytest -p pytest_mock -v -n auto
+
+# Run integration tests in parallel
+test-int:
+    uv run pytest -p pytest_mock -v --no-cov -n auto test-int
+
+# Run all tests
+test: test-unit test-int
+
+# Lint and fix code
+lint:
+    uv run ruff check . --fix
+
+# Type check code
+type-check:
+    uv run pyright
+
+# Clean build artifacts and cache files
+clean:
+    find . -type f -name '*.pyc' -delete
+    find . -type d -name '__pycache__' -exec rm -r {} +
+    rm -rf installer/build/ installer/dist/ dist/
+    rm -f rw.*.dmg .coverage.*
+
+# Format code with ruff
+format:
+    uv run ruff format .
+
+# Run MCP inspector tool
+run-inspector:
+    npx @modelcontextprotocol/inspector
+
+# Build macOS installer
+installer-mac:
+    cd installer && chmod +x make_icons.sh && ./make_icons.sh
+    cd installer && uv run python setup.py bdist_mac
+
+# Build Windows installer
+installer-win:
+    cd installer && uv run python setup.py bdist_win32
+
+# Update all dependencies to latest versions
+update-deps:
+    uv sync --upgrade
+
+# Run all code quality checks and tests
+check: lint format type-check test
+
+# Generate Alembic migration with descriptive message
+migration message:
+    cd src/basic_memory/alembic && alembic revision --autogenerate -m "{{message}}"
+
+# Create a stable release (e.g., just release v0.13.2)
+release version:
+    #!/usr/bin/env bash
+    set -euo pipefail
+    
+    # Validate version format
+    if [[ ! "{{version}}" =~ ^v[0-9]+\.[0-9]+\.[0-9]+$ ]]; then
+        echo "❌ Invalid version format. Use: v0.13.2"
+        exit 1
+    fi
+    
+    # Extract version number without 'v' prefix
+    VERSION_NUM=$(echo "{{version}}" | sed 's/^v//')
+    
+    echo "🚀 Creating stable release {{version}}"
+    
+    # Pre-flight checks
+    echo "📋 Running pre-flight checks..."
+    if [[ -n $(git status --porcelain) ]]; then
+        echo "❌ Uncommitted changes found. Please commit or stash them first."
+        exit 1
+    fi
+    
+    if [[ $(git branch --show-current) != "main" ]]; then
+        echo "❌ Not on main branch. Switch to main first."
+        exit 1
+    fi
+    
+    # Check if tag already exists
+    if git tag -l "{{version}}" | grep -q "{{version}}"; then
+        echo "❌ Tag {{version}} already exists"
+        exit 1
+    fi
+    
+    # Run quality checks
+    echo "🔍 Running quality checks..."
+    just check
+    
+    # Update version in __init__.py
+    echo "📝 Updating version in __init__.py..."
+    sed -i.bak "s/__version__ = \".*\"/__version__ = \"$VERSION_NUM\"/" src/basic_memory/__init__.py
+    rm -f src/basic_memory/__init__.py.bak
+    
+    # Commit version update
+    git add src/basic_memory/__init__.py
+    git commit -m "chore: update version to $VERSION_NUM for {{version}} release"
+    
+    # Create and push tag
+    echo "🏷️  Creating tag {{version}}..."
+    git tag "{{version}}"
+    
+    echo "📤 Pushing to GitHub..."
+    git push origin main
+    git push origin "{{version}}"
+    
+    echo "✅ Release {{version}} created successfully!"
+    echo "📦 GitHub Actions will build and publish to PyPI"
+    echo "🔗 Monitor at: https://github.com/basicmachines-co/basic-memory/actions"
+
+# Create a beta release (e.g., just beta v0.13.2b1)
+beta version:
+    #!/usr/bin/env bash
+    set -euo pipefail
+    
+    # Validate version format (allow beta/rc suffixes)
+    if [[ ! "{{version}}" =~ ^v[0-9]+\.[0-9]+\.[0-9]+(b[0-9]+|rc[0-9]+)$ ]]; then
+        echo "❌ Invalid beta version format. Use: v0.13.2b1 or v0.13.2rc1"
+        exit 1
+    fi
+    
+    # Extract version number without 'v' prefix
+    VERSION_NUM=$(echo "{{version}}" | sed 's/^v//')
+    
+    echo "🧪 Creating beta release {{version}}"
+    
+    # Pre-flight checks
+    echo "📋 Running pre-flight checks..."
+    if [[ -n $(git status --porcelain) ]]; then
+        echo "❌ Uncommitted changes found. Please commit or stash them first."
+        exit 1
+    fi
+    
+    if [[ $(git branch --show-current) != "main" ]]; then
+        echo "❌ Not on main branch. Switch to main first."
+        exit 1
+    fi
+    
+    # Check if tag already exists
+    if git tag -l "{{version}}" | grep -q "{{version}}"; then
+        echo "❌ Tag {{version}} already exists"
+        exit 1
+    fi
+    
+    # Run quality checks
+    echo "🔍 Running quality checks..."
+    just check
+    
+    # Update version in __init__.py
+    echo "📝 Updating version in __init__.py..."
+    sed -i.bak "s/__version__ = \".*\"/__version__ = \"$VERSION_NUM\"/" src/basic_memory/__init__.py
+    rm -f src/basic_memory/__init__.py.bak
+    
+    # Commit version update
+    git add src/basic_memory/__init__.py
+    git commit -m "chore: update version to $VERSION_NUM for {{version}} beta release"
+    
+    # Create and push tag
+    echo "🏷️  Creating tag {{version}}..."
+    git tag "{{version}}"
+    
+    echo "📤 Pushing to GitHub..."
+    git push origin main
+    git push origin "{{version}}"
+    
+    echo "✅ Beta release {{version}} created successfully!"
+    echo "📦 GitHub Actions will build and publish to PyPI as pre-release"
+    echo "🔗 Monitor at: https://github.com/basicmachines-co/basic-memory/actions"
+    echo "📥 Install with: uv tool install basic-memory --pre"
+
+# List all available recipes
+default:
+    @just --list
@@ -0,0 +1,31 @@
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+src/basic_memory/schemas/importer.py,importer.py,source_code,693,2025-07-30,jope-bm,jope-bm; bm-claudeai (AI Assistant),ac33df423ca32b28ce7b6ea9c29d541f8783a86c0c29f78db35163bf93f139cd
+src/basic_memory/services/project_service.py,project_service.py,source_code,30125,2025-07-30,jope-bm,jope-bm; Paul Hernandez; bm-claudeai (AI Assistant),bce95c00aa9a1da0a8c8090ee34b5b1494207f8c99e6c25de4ec43fddc38f6be
+src/basic_memory/utils.py,utils.py,source_code,8654,2025-07-30,jope-bm,jope-bm; Paul Hernandez; Drew Cain; andyxinweiminicloud; github-actions[bot] (AI Assistant),111f343e3367339730e081c08acf4613667be574f946126513b5d82da3086bed
+tests/api/test_async_client.py,test_async_client.py,source_code,1382,2025-07-30,jope-bm,jope-bm; Paul Hernandez,a2f96226a75e5cff2326ca48ddccea4915964d83e529f7b99958bc233ccdc31a
+tests/api/test_project_router.py,test_project_router.py,source_code,13288,2025-07-30,jope-bm,jope-bm; Paul Hernandez; bm-claudeai (AI Assistant),af85d0870069d3831a9214372853994e5d12dc910e37298eb9958f72f6a8bb31
+tests/cli/test_import_memory_json.py,test_import_memory_json.py,source_code,4891,2025-07-30,jope-bm,jope-bm; bm-claudeai (AI Assistant); Paul Hernandez,d6734ce059dacf97bc764d848b2e2a6ba52fa96871bc331ec9d2ddc60b766bb6
+tests/cli/test_project_commands.py,test_project_commands.py,source_code,6578,2025-07-30,jope-bm,jope-bm; Paul Hernandez; bm-claudeai (AI Assistant),51e2ac7ff44b0d1a1db6da406c5c2e6aebceb1b63a1e8d5ab51bbaa834507157
+tests/mcp/test_tool_move_note.py,test_tool_move_note.py,source_code,25851,2025-07-30,jope-bm,jope-bm; Paul Hernandez,c9f95158503fa42e37532aaa35027538fa49cea718d059d570cf547d31f01043
+tests/mcp/test_tool_read_content.py,test_tool_read_content.py,source_code,19442,2025-07-30,jope-bm,jope-bm,1817e32f997b06dbdabf02864d0c70584c1cd80bf1fae8dfbef649de79434bc5
+tests/mcp/test_tool_read_note.py,test_tool_read_note.py,source_code,22991,2025-07-30,jope-bm,jope-bm; Paul Hernandez; Amadeusz Wieczorek; github-actions[bot] (AI Assistant),4e13ea9ff977525aa62b6a8c22505ffe989329dc3e7d07b71e044cf43ef3ddfd
+tests/mcp/test_tool_write_note.py,test_tool_write_note.py,source_code,35136,2025-07-30,jope-bm,jope-bm; Drew Cain; Paul Hernandez,45172de20cfc4f4436287573b4f5a94b8b616a360647af67ba1c6c343ccd41b8
+tests/repository/test_project_repository.py,test_project_repository.py,source_code,10511,2025-07-30,jope-bm,jope-bm; bm-claudeai (AI Assistant),279a3324635b1b515c18003bd1875cf230fef1192cadef9ca426846783717e75
+tests/services/test_project_service.py,test_project_service.py,source_code,28152,2025-07-30,jope-bm,jope-bm; Paul Hernandez; bm-claudeai (AI Assistant),430868ed796518937a3b0bed4d8c33be53264a6100d61d54b0745bb2b58bf29a
+tests/utils/test_validate_project_path.py,test_validate_project_path.py,source_code,15346,2025-07-30,jope-bm,jope-bm,27a4bf2a9d277e6cd773619e5241b20175d211ec60c284361bec404fd99143f3
@@ -0,0 +1,438 @@
+#!/usr/bin/env python3
+"""
+Legal File Inventory Generator for Basic Memory
+
+This script generates a comprehensive file inventory for legal documentation purposes,
+including copyright assignments and company agreement exhibits.
+
+The inventory includes:
+- All source code files and their contributors
+- Documentation and configuration files
+- License and legal files
+- Excludes generated files, dependencies, and temporary files
+
+Usage:
+    python legal_file_inventory.py [--output inventory.csv] [--format csv|json|markdown]
+"""
+
+import os
+import json
+import csv
+import subprocess
+from pathlib import Path
+from datetime import datetime
+from typing import Dict, List
+import argparse
+import hashlib
+
+class FileInventoryGenerator:
+    def __init__(self, repo_path: str = "."):
+        self.repo_path = Path(repo_path).resolve()
+        self.inventory = []
+        
+        # File patterns to exclude from legal inventory
+        self.exclude_patterns = {
+            # Version control and git
+            '.git', '.gitignore', '.gitmodules',
+            
+            # Python compiled and cache files
+            '__pycache__', '*.pyc', '*.pyo', '*.pyd', '.pytest_cache',
+            
+            # Virtual environments and dependencies
+            '.venv', 'venv', '.env', 'env', 'ENV',
+            '*.dist-info', 'site-packages',
+            
+            # IDE and editor files
+            '.idea', '.vscode', '*.swp', '*.swo', '.DS_Store',
+            
+            # Build and distribution artifacts
+            'build', 'dist', 'htmlcov', '.coverage', '.coverage.*',
+            '*.egg-info', '.eggs', 'wheels',
+            
+            # Cache and temporary files
+            '.ruff_cache', '.mypy_cache', '.tox',
+            'node_modules', '.npm',
+            
+            # Documentation build artifacts (but keep source docs)
+            '.obsidian',
+            
+            # Lock files (these are generated)
+            'uv.lock', 'Pipfile.lock', 'poetry.lock', 'package-lock.json'
+        }
+        
+        # File extensions that are definitely source/authored content
+        self.source_extensions = {
+            '.py', '.md', '.rst', '.txt', '.toml', '.yaml', '.yml',
+            '.json', '.cfg', '.ini', '.conf', '.sh', '.sql',
+            '.js', '.ts', '.jsx', '.tsx', '.css', '.scss', '.sass',
+            '.html', '.htm', '.xml', '.svg', '.dockerfile', '.Dockerfile'
+        }
+        
+        # License file patterns
+        self.license_patterns = {
+            'LICENSE', 'LICENCE', 'COPYING', 'COPYRIGHT',
+            'license.txt', 'LICENSE.txt', 'LICENSE.md',
+            'CITATION.cff', 'CLA.md'
+        }
+
+    def run_git_command(self, command: List[str]) -> str:
+        """Run a git command and return the output."""
+        try:
+            result = subprocess.run(
+                ['git'] + command,
+                cwd=self.repo_path,
+                capture_output=True,
+                text=True,
+                check=True
+            )
+            return result.stdout.strip()
+        except subprocess.CalledProcessError:
+            return ""
+
+    def get_file_contributors(self, file_path: str) -> Dict[str, int]:
+        """Get contributors and their line contributions for a file."""
+        try:
+            blame_output = self.run_git_command(['blame', '--line-porcelain', file_path])
+            contributors = {}
+            
+            for line in blame_output.split('\n'):
+                if line.startswith('author '):
+                    author = line[7:]  # Remove 'author ' prefix
+                    contributors[author] = contributors.get(author, 0) + 1
+                    
+            return contributors
+        except Exception:
+            return {}
+
+    def get_file_history(self, file_path: str) -> Dict[str, any]:
+        """Get file creation date, last modification, and total commits."""
+        try:
+            # Get creation date (first commit)
+            first_commit = self.run_git_command([
+                'log', '--follow', '--format=%ad', '--date=iso',
+                '--reverse', file_path
+            ]).split('\n')[0] if self.run_git_command([
+                'log', '--follow', '--format=%ad', '--date=iso', 
+                '--reverse', file_path
+            ]) else None
+            
+            # Get last modification date
+            last_commit = self.run_git_command([
+                'log', '-1', '--format=%ad', '--date=iso', file_path
+            ])
+            
+            # Get total commits for this file
+            commit_count = len(self.run_git_command([
+                'log', '--follow', '--oneline', file_path
+            ]).split('\n')) if self.run_git_command([
+                'log', '--follow', '--oneline', file_path
+            ]) else 0
+            
+            return {
+                'created': first_commit or 'Unknown',
+                'last_modified': last_commit or 'Unknown',
+                'commit_count': commit_count
+            }
+        except Exception:
+            return {
+                'created': 'Unknown',
+                'last_modified': 'Unknown', 
+                'commit_count': 0
+            }
+
+    def should_exclude_file(self, file_path: Path) -> bool:
+        """Determine if a file should be excluded from the inventory."""
+        str_path = str(file_path)
+        
+        # Check if any part of the path matches exclude patterns
+        for pattern in self.exclude_patterns:
+            if pattern in str_path or file_path.match(pattern):
+                return True
+        
+        # Exclude files in virtual environment paths
+        if '/.venv/' in str_path or '/venv/' in str_path:
+            return True
+            
+        # Exclude binary files that are likely dependencies
+        if file_path.suffix in {'.so', '.dylib', '.dll', '.pyd'}:
+            return True
+            
+        return False
+
+    def calculate_file_hash(self, file_path: Path) -> str:
+        """Calculate SHA-256 hash of file content."""
+        try:
+            with open(file_path, 'rb') as f:
+                return hashlib.sha256(f.read()).hexdigest()
+        except Exception:
+            return ""
+
+    def categorize_file(self, file_path: Path) -> str:
+        """Categorize the file based on its path and extension."""
+        str_path = str(file_path).lower()
+        
+        # License and legal files
+        if any(pattern.lower() in file_path.name.lower() for pattern in self.license_patterns):
+            return "Legal/License"
+        
+        # Documentation
+        if file_path.suffix.lower() in {'.md', '.rst', '.txt'} and any(
+            doc_dir in str_path for doc_dir in ['doc', 'readme', 'changelog', 'contributing']
+        ):
+            return "Documentation"
+        
+        # Configuration files
+        if file_path.suffix.lower() in {'.toml', '.yaml', '.yml', '.json', '.cfg', '.ini', '.conf'}:
+            return "Configuration"
+        
+        # Source code
+        if file_path.suffix.lower() in {'.py', '.js', '.ts', '.jsx', '.tsx'}:
+            return "Source Code"
+        
+        # Tests
+        if 'test' in str_path and file_path.suffix.lower() == '.py':
+            return "Test Code"
+        
+        # Build and deployment
+        if file_path.name.lower() in {'dockerfile', 'justfile', 'makefile'} or file_path.suffix.lower() in {'.sh'}:
+            return "Build/Deployment"
+        
+        # Database and migrations
+        if 'migration' in str_path or 'alembic' in str_path or file_path.suffix.lower() == '.sql':
+            return "Database/Migration"
+        
+        # Templates and resources
+        if file_path.suffix.lower() in {'.hbs', '.j2', '.jinja', '.template'}:
+            return "Templates/Resources"
+        
+        return "Other"
+
+    def scan_repository(self):
+        """Scan the repository and build the file inventory."""
+        print(f"Scanning repository: {self.repo_path}")
+        
+        for root, dirs, files in os.walk(self.repo_path):
+            # Skip excluded directories
+            dirs[:] = [d for d in dirs if not any(pattern in d for pattern in self.exclude_patterns)]
+            
+            for file in files:
+                file_path = Path(root) / file
+                relative_path = file_path.relative_to(self.repo_path)
+                
+                # Skip excluded files
+                if self.should_exclude_file(relative_path):
+                    continue
+                
+                # Get file stats
+                try:
+                    stat_info = file_path.stat()
+                    file_size = stat_info.st_size
+                    modified_time = datetime.fromtimestamp(stat_info.st_mtime)
+                except Exception:
+                    file_size = 0
+                    modified_time = datetime.now()
+                
+                # Get git information
+                contributors = self.get_file_contributors(str(relative_path))
+                history = self.get_file_history(str(relative_path))
+                
+                # Calculate file hash for integrity verification
+                file_hash = self.calculate_file_hash(file_path)
+                
+                # Build inventory entry
+                entry = {
+                    'file_path': str(relative_path),
+                    'full_path': str(file_path),
+                    'file_name': file_path.name,
+                    'file_extension': file_path.suffix,
+                    'file_size_bytes': file_size,
+                    'category': self.categorize_file(relative_path),
+                    'fs_modified_date': modified_time.isoformat(),
+                    'git_created_date': history['created'],
+                    'git_last_modified': history['last_modified'],
+                    'git_commit_count': history['commit_count'],
+                    'contributors': contributors,
+                    'primary_author': max(contributors.items(), key=lambda x: x[1])[0] if contributors else 'Unknown',
+                    'contributor_count': len(contributors),
+                    'total_author_lines': sum(contributors.values()) if contributors else 0,
+                    'sha256_hash': file_hash,
+                    'scan_timestamp': datetime.now().isoformat()
+                }
+                
+                self.inventory.append(entry)
+        
+        print(f"Scanned {len(self.inventory)} files")
+
+    def get_summary_statistics(self) -> Dict:
+        """Generate summary statistics for the inventory."""
+        if not self.inventory:
+            return {}
+        
+        # Collect all contributors
+        all_contributors = set()
+        for entry in self.inventory:
+            all_contributors.update(entry['contributors'].keys())
+        
+        # Category breakdown
+        categories = {}
+        for entry in self.inventory:
+            cat = entry['category']
+            categories[cat] = categories.get(cat, 0) + 1
+        
+        # File extension breakdown
+        extensions = {}
+        for entry in self.inventory:
+            ext = entry['file_extension'] or 'no_extension'
+            extensions[ext] = extensions.get(ext, 0) + 1
+        
+        # Contributor statistics
+        contributor_files = {}
+        contributor_lines = {}
+        for entry in self.inventory:
+            for contributor, lines in entry['contributors'].items():
+                contributor_files[contributor] = contributor_files.get(contributor, 0) + 1
+                contributor_lines[contributor] = contributor_lines.get(contributor, 0) + lines
+        
+        return {
+            'total_files': len(self.inventory),
+            'total_contributors': len(all_contributors),
+            'categories': categories,
+            'file_extensions': extensions,
+            'contributor_file_counts': contributor_files,
+            'contributor_line_counts': contributor_lines,
+            'scan_date': datetime.now().isoformat(),
+            'repository_path': str(self.repo_path)
+        }
+
+    def export_csv(self, output_file: str):
+        """Export inventory to CSV format."""
+        with open(output_file, 'w', newline='', encoding='utf-8') as f:
+            if not self.inventory:
+                return
+            
+            fieldnames = list(self.inventory[0].keys())
+            # Convert complex fields to strings for CSV
+            fieldnames = [f for f in fieldnames if f != 'contributors']
+            fieldnames.append('contributors_json')
+            
+            writer = csv.DictWriter(f, fieldnames=fieldnames)
+            writer.writeheader()
+            
+            for entry in self.inventory:
+                row = {k: v for k, v in entry.items() if k != 'contributors'}
+                row['contributors_json'] = json.dumps(entry['contributors'])
+                writer.writerow(row)
+
+    def export_json(self, output_file: str):
+        """Export inventory to JSON format."""
+        export_data = {
+            'metadata': self.get_summary_statistics(),
+            'files': self.inventory
+        }
+        
+        with open(output_file, 'w', encoding='utf-8') as f:
+            json.dump(export_data, f, indent=2, ensure_ascii=False)
+
+    def export_markdown(self, output_file: str):
+        """Export inventory to Markdown format."""
+        stats = self.get_summary_statistics()
+        
+        with open(output_file, 'w', encoding='utf-8') as f:
+            f.write("# Basic Memory - Legal File Inventory\n\n")
+            f.write(f"**Generated:** {datetime.now().isoformat()}\n\n")
+            f.write(f"**Repository:** {stats.get('repository_path', 'Unknown')}\n\n")
+            
+            # Summary statistics
+            f.write("## Summary Statistics\n\n")
+            f.write(f"- **Total Files:** {stats.get('total_files', 0)}\n")
+            f.write(f"- **Total Contributors:** {stats.get('total_contributors', 0)}\n\n")
+            
+            # Categories
+            if 'categories' in stats:
+                f.write("### Files by Category\n\n")
+                for category, count in sorted(stats['categories'].items()):
+                    f.write(f"- **{category}:** {count} files\n")
+                f.write("\n")
+            
+            # Top contributors
+            if 'contributor_file_counts' in stats:
+                f.write("### Top Contributors by Files Modified\n\n")
+                sorted_contributors = sorted(
+                    stats['contributor_file_counts'].items(), 
+                    key=lambda x: x[1], 
+                    reverse=True
+                )[:10]
+                for contributor, count in sorted_contributors:
+                    f.write(f"- **{contributor}:** {count} files\n")
+                f.write("\n")
+            
+            # Detailed file listing
+            f.write("## Detailed File Inventory\n\n")
+            f.write("| File Path | Category | Size (bytes) | Primary Author | Contributors |\n")
+            f.write("|-----------|----------|--------------|----------------|-------------|\n")
+            
+            for entry in sorted(self.inventory, key=lambda x: x['file_path']):
+                contributors_str = ', '.join(entry['contributors'].keys())[:50]
+                if len(contributors_str) == 50:
+                    contributors_str += "..."
+                
+                f.write(f"| {entry['file_path']} | {entry['category']} | "
+                       f"{entry['file_size_bytes']} | {entry['primary_author']} | "
+                       f"{contributors_str} |\n")
+
+def main():
+    parser = argparse.ArgumentParser(
+        description="Generate legal file inventory for Basic Memory repository"
+    )
+    parser.add_argument(
+        '--output', '-o',
+        default='basic_memory_legal_inventory.csv',
+        help='Output file path (default: basic_memory_legal_inventory.csv)'
+    )
+    parser.add_argument(
+        '--format', '-f',
+        choices=['csv', 'json', 'markdown'],
+        default='csv',
+        help='Output format (default: csv)'
+    )
+    parser.add_argument(
+        '--repo-path', '-r',
+        default='.',
+        help='Path to repository (default: current directory)'
+    )
+    
+    args = parser.parse_args()
+    
+    # Initialize and run the inventory generator
+    generator = FileInventoryGenerator(args.repo_path)
+    generator.scan_repository()
+    
+    # Export in requested format
+    if args.format == 'csv':
+        generator.export_csv(args.output)
+    elif args.format == 'json':
+        generator.export_json(args.output)
+    elif args.format == 'markdown':
+        generator.export_markdown(args.output)
+    
+    # Print summary
+    stats = generator.get_summary_statistics()
+    print("\n=== Legal File Inventory Complete ===")
+    print(f"Repository: {stats.get('repository_path', 'Unknown')}")
+    print(f"Total files inventoried: {stats.get('total_files', 0)}")
+    print(f"Total contributors identified: {stats.get('total_contributors', 0)}")
+    print(f"Output written to: {args.output}")
+    
+    # Show top contributors
+    if 'contributor_file_counts' in stats:
+        print("\nTop 5 contributors by files modified:")
+        sorted_contributors = sorted(
+            stats['contributor_file_counts'].items(),
+            key=lambda x: x[1],
+            reverse=True
+        )[:5]
+        for i, (contributor, count) in enumerate(sorted_contributors, 1):
+            print(f"  {i}. {contributor}: {count} files")
+
+if __name__ == '__main__':
+    main()
@@ -0,0 +1,272 @@
+path,name,category,size_bytes,modified_time,primary_author,contributor_count,contributors_list,sha256_hash
+.claude/commands/release/beta.md,beta.md,documentation,3103,2025-07-01T08:33:22.037438,Paul Hernandez,1,Paul Hernandez (paul@basicmachines.co),345f06e3f304470a8892e96979355919c8e5d8f4212ebbe543c3272fd15a5cbe
+.claude/commands/release/changelog.md,changelog.md,documentation,4648,2025-07-03T18:43:10.075727,Paul Hernandez,1,Paul Hernandez (paul@basicmachines.co),ea2484352f4f881aa71f546dcf84b0882d60c96673a88406aa2f7e12a282a1f4
+.claude/commands/release/release-check.md,release-check.md,documentation,3344,2025-07-01T08:33:22.040060,Paul Hernandez,1,Paul Hernandez (paul@basicmachines.co),7dd41a40e95c89153936c4ea60a3c989eccd5973fff9f6caef156de82f12bd04
+.claude/commands/release/release.md,release.md,documentation,2925,2025-07-01T08:33:22.043674,Paul Hernandez,1,Paul Hernandez (paul@basicmachines.co),0e4afd788fcf85fbe46094452e9b92a4290c3e23702283e72ee56aa9288476e5
+.claude/commands/test-live.md,test-live.md,documentation,18720,2025-07-03T18:43:10.076403,Paul Hernandez,1,Paul Hernandez (paul@basicmachines.co),21a9edeefb3e5673d833151a2fd0464087c0f0a9d056fdd7fca474c1d177d6fc
+.dockerignore,.dockerignore,other,623,2025-07-01T08:33:22.048301,Paul Hernandez,1,Paul Hernandez (60959+phernandez@users.noreply.github.com),b3079bffad89d07186c9166725075524ffc07ceea6dc1d53fdbea6dca9585684
+.github/ISSUE_TEMPLATE/bug_report.md,bug_report.md,documentation,967,2025-03-01T14:22:50.968994,Paul Hernandez,1,Paul Hernandez (phernandez@basicmachines.co),0d34443ddda84a5e9726c8268083c9646d2cc64ff9c5ebf56c89587cef4c7706
+.github/ISSUE_TEMPLATE/config.yml,config.yml,configuration,374,2025-03-01T14:23:26.936836,Paul Hernandez,1,Paul Hernandez (phernandez@basicmachines.co),f4e21bb9b7f053509b6c08548a2649a5d62f44f0106810aa8c915d2f29acc623
+.github/ISSUE_TEMPLATE/documentation.md,documentation.md,documentation,557,2025-03-01T14:23:40.020117,Paul Hernandez,1,Paul Hernandez (phernandez@basicmachines.co),78f80a6b9a2b954695f74a847a068e0b780da6020572401c13c931555a4a9db5
+.github/ISSUE_TEMPLATE/feature_request.md,feature_request.md,documentation,786,2025-03-01T14:23:06.344081,Paul Hernandez,1,Paul Hernandez (phernandez@basicmachines.co),cee834de442221d53f3d2eeb85b81f3a641b3a7cb587ef8a169452305007439d
+.github/dependabot.yml,dependabot.yml,configuration,529,2025-03-15T10:40:16.936258,Paul Hernandez,1,Paul Hernandez (60959+phernandez@users.noreply.github.com),8c6c2ef9a1417da63adb49c70f45524129bd5c46bbd7452b6b97cfe65205f89d
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+tests/services/test_project_service.py,test_project_service.py,source_code,28152,2025-07-30T09:39:45.728920,jope-bm,3,jope-bm (joe@basicmemory.com); Paul Hernandez (60959+phernandez@users.noreply.github.com); bm-claudeai (AI Assistant) (claude@basicmachines.co),430868ed796518937a3b0bed4d8c33be53264a6100d61d54b0745bb2b58bf29a
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+tests/services/test_sync_status_service.py,test_sync_status_service.py,source_code,9926,2025-07-03T18:43:10.087266,Paul Hernandez,1,Paul Hernandez (60959+phernandez@users.noreply.github.com),00245ca356e33fc7afcd2d42cb5ec082038c95383d738067821cf1e8d23c9a4b
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+uv.lock,uv.lock,other,232710,2025-07-30T09:39:36.619155,Paul Hernandez,3,Paul Hernandez (60959+phernandez@users.noreply.github.com); Drew Cain (groksrc@users.noreply.github.com); bm-claudeai (AI Assistant) (claude@basicmachines.co),caa1e3f6e66464b884a78cab77df2fe303fa3c0dc573be0196474b6d3c150581
@@ -0,0 +1,294 @@
+# Basic Memory - Legal File Inventory
+
+**Generated:** 2025-07-29T16:10:54.745774
+
+**Repository:** /Users/phernandez/dev/basicmachines/basic-memory
+
+## Summary Statistics
+
+- **Total Files:** 255
+- **Total Contributors:** 12
+
+### Files by Category
+
+- **Build/Deployment:** 2 files
+- **Configuration:** 6 files
+- **Database/Migration:** 1 files
+- **Documentation:** 6 files
+- **Legal/License:** 3 files
+- **Other:** 13 files
+- **Source Code:** 222 files
+- **Templates/Resources:** 2 files
+
+### Top Contributors by Files Modified
+
+- **phernandez:** 190 files
+- **Paul Hernandez:** 181 files
+- **bm-claudeai:** 135 files
+- **Drew Cain:** 24 files
+- **github-actions[bot]:** 20 files
+- **Amadeusz Wieczorek:** 2 files
+- **semantic-release:** 1 files
+- **Jason Noble:** 1 files
+- **Marc Baiza:** 1 files
+- **Matias Forbord:** 1 files
+
+## Detailed File Inventory
+
+| File Path | Category | Size (bytes) | Primary Author | Contributors |
+|-----------|----------|--------------|----------------|-------------|
+| .claude/commands/release/beta.md | Other | 3103 | phernandez | phernandez |
+| .claude/commands/release/changelog.md | Documentation | 4648 | phernandez | phernandez |
+| .claude/commands/release/release-check.md | Other | 3344 | phernandez | phernandez |
+| .claude/commands/release/release.md | Other | 2925 | phernandez | phernandez |
+| .claude/commands/test-live.md | Other | 18720 | phernandez | phernandez |
+| .claude/settings.local.json | Configuration | 3122 | Unknown |  |
+| .dockerignore | Other | 623 | Paul Hernandez | Paul Hernandez |
+| .python-version | Other | 5 | phernandez | phernandez |
+| CHANGELOG.md | Documentation | 53647 | semantic-release | semantic-release, phernandez |
+| CITATION.cff | Legal/License | 302 | phernandez | phernandez |
+| CLA.md | Legal/License | 1342 | phernandez | phernandez |
+| CLAUDE.md | Other | 12310 | Paul Hernandez | Paul Hernandez, phernandez, Ikko Eltociear Ashimin... |
+| CODE_OF_CONDUCT.md | Other | 509 | phernandez | phernandez |
+| CONTRIBUTING.md | Documentation | 7241 | phernandez | phernandez, Paul Hernandez |
+| Dockerfile | Build/Deployment | 856 | Paul Hernandez | Paul Hernandez, bm-claudeai |
+| LICENSE | Legal/License | 34523 | Paul Hernandez | Paul Hernandez |
+| README.md | Documentation | 16261 | phernandez | phernandez, bm-claudeai, Paul Hernandez, Jason Nob... |
+| SECURITY.md | Other | 303 | Paul Hernandez | Paul Hernandez |
+| docker-compose.yml | Configuration | 2534 | Paul Hernandez | Paul Hernandez, phernandez |
+| docs/AI Assistant Guide.md | Documentation | 16423 | Paul Hernandez | Paul Hernandez, phernandez |
+| docs/Docker.md | Documentation | 9088 | Paul Hernandez | Paul Hernandez, phernandez |
+| justfile | Build/Deployment | 5371 | phernandez | phernandez, Drew Cain |
+| legal_file_inventory.py | Source Code | 17407 | Unknown |  |
+| llms-install.md | Other | 2307 | phernandez | phernandez |
+| memory.json | Configuration | 90075 | phernandez | phernandez |
+| pyproject.toml | Configuration | 3279 | phernandez | phernandez, Paul Hernandez, bm-claudeai, Drew Cain... |
+| smithery.yaml | Configuration | 433 | bm-claudeai | bm-claudeai |
+| src/basic_memory/__init__.py | Source Code | 256 | phernandez | phernandez |
+| src/basic_memory/alembic/alembic.ini | Configuration | 3733 | phernandez | phernandez |
+| src/basic_memory/alembic/migrations.py | Source Code | 718 | Paul Hernandez | Paul Hernandez |
+| src/basic_memory/alembic/script.py.mako | Database/Migration | 635 | Paul Hernandez | Paul Hernandez |
+| src/basic_memory/alembic/versions/3dae7c7b1564_initial_schema.py | Source Code | 4363 | Paul Hernandez | Paul Hernandez |
+| src/basic_memory/alembic/versions/502b60eaa905_remove_required_from_entity_permalink.py | Source Code | 1840 | Paul Hernandez | Paul Hernandez |
+| src/basic_memory/alembic/versions/5fe1ab1ccebe_add_projects_table.py | Source Code | 4379 | bm-claudeai | bm-claudeai |
+| src/basic_memory/alembic/versions/647e7a75e2cd_project_constraint_fix.py | Source Code | 4210 | phernandez | phernandez |
+| src/basic_memory/alembic/versions/b3c3938bacdb_relation_to_name_unique_index.py | Source Code | 1428 | Paul Hernandez | Paul Hernandez |
+| src/basic_memory/alembic/versions/cc7172b46608_update_search_index_schema.py | Source Code | 3679 | Paul Hernandez | Paul Hernandez |
+| src/basic_memory/api/__init__.py | Source Code | 72 | phernandez | phernandez, Paul Hernandez |
+| src/basic_memory/api/app.py | Source Code | 2897 | bm-claudeai | phernandez, bm-claudeai, Paul Hernandez |
+| src/basic_memory/api/routers/__init__.py | Source Code | 398 | phernandez | phernandez, bm-claudeai |
+| src/basic_memory/api/routers/directory_router.py | Source Code | 2054 | Paul Hernandez | bm-claudeai, Paul Hernandez |
+| src/basic_memory/api/routers/importer_router.py | Source Code | 4513 | bm-claudeai | bm-claudeai |
+| src/basic_memory/api/routers/knowledge_router.py | Source Code | 9738 | Paul Hernandez | phernandez, Paul Hernandez, bm-claudeai |
+| src/basic_memory/api/routers/management_router.py | Source Code | 2730 | bm-claudeai | bm-claudeai, phernandez |
+| src/basic_memory/api/routers/memory_router.py | Source Code | 3003 | phernandez | phernandez, bm-claudeai, Paul Hernandez |
+| src/basic_memory/api/routers/project_router.py | Source Code | 8239 | bm-claudeai | bm-claudeai, phernandez, Paul Hernandez |
+| src/basic_memory/api/routers/prompt_router.py | Source Code | 9948 | bm-claudeai | bm-claudeai, phernandez |
+| src/basic_memory/api/routers/resource_router.py | Source Code | 8058 | Paul Hernandez | phernandez, Paul Hernandez |
+| src/basic_memory/api/routers/search_router.py | Source Code | 1226 | phernandez | phernandez, Paul Hernandez, bm-claudeai |
+| src/basic_memory/api/routers/utils.py | Source Code | 5159 | bm-claudeai | bm-claudeai, Drew Cain |
+| src/basic_memory/api/template_loader.py | Source Code | 8607 | bm-claudeai | bm-claudeai |
+| src/basic_memory/cli/__init__.py | Source Code | 33 | Paul Hernandez | Paul Hernandez |
+| src/basic_memory/cli/app.py | Source Code | 2268 | Paul Hernandez | Paul Hernandez, phernandez, bm-claudeai |
+| src/basic_memory/cli/commands/__init__.py | Source Code | 393 | Paul Hernandez | Paul Hernandez, phernandez |
+| src/basic_memory/cli/commands/db.py | Source Code | 1480 | Paul Hernandez | Paul Hernandez, phernandez, bm-claudeai |
+| src/basic_memory/cli/commands/import_chatgpt.py | Source Code | 2856 | Paul Hernandez | Paul Hernandez, bm-claudeai, phernandez |
+| src/basic_memory/cli/commands/import_claude_conversations.py | Source Code | 2946 | Paul Hernandez | Paul Hernandez, bm-claudeai, phernandez |
+| src/basic_memory/cli/commands/import_claude_projects.py | Source Code | 2891 | Paul Hernandez | Paul Hernandez, bm-claudeai, phernandez |
+| src/basic_memory/cli/commands/import_memory_json.py | Source Code | 2947 | Paul Hernandez | phernandez, bm-claudeai, Paul Hernandez |
+| src/basic_memory/cli/commands/mcp.py | Source Code | 2593 | phernandez | bm-claudeai, phernandez, Paul Hernandez |
+| src/basic_memory/cli/commands/project.py | Source Code | 12252 | phernandez | Paul Hernandez, phernandez, bm-claudeai |
+| src/basic_memory/cli/commands/status.py | Source Code | 5809 | phernandez | phernandez, bm-claudeai, Paul Hernandez |
+| src/basic_memory/cli/commands/sync.py | Source Code | 8213 | phernandez | phernandez, bm-claudeai, Paul Hernandez |
+| src/basic_memory/cli/commands/tool.py | Source Code | 9540 | phernandez | Paul Hernandez, phernandez, github-actions[bot] |
+| src/basic_memory/cli/main.py | Source Code | 465 | Paul Hernandez | Paul Hernandez, phernandez |
+| src/basic_memory/config.py | Source Code | 12620 | Paul Hernandez | phernandez, Paul Hernandez, bm-claudeai, Drew Cain... |
+| src/basic_memory/db.py | Source Code | 7428 | phernandez | phernandez, Paul Hernandez, Drew Cain, bm-claudeai... |
+| src/basic_memory/deps.py | Source Code | 12144 | bm-claudeai | phernandez, Paul Hernandez, bm-claudeai |
+| src/basic_memory/file_utils.py | Source Code | 6700 | phernandez | phernandez, Paul Hernandez |
+| src/basic_memory/importers/__init__.py | Source Code | 795 | bm-claudeai | bm-claudeai |
+| src/basic_memory/importers/base.py | Source Code | 2531 | bm-claudeai | bm-claudeai |
+| src/basic_memory/importers/chatgpt_importer.py | Source Code | 7372 | bm-claudeai | bm-claudeai |
+| src/basic_memory/importers/claude_conversations_importer.py | Source Code | 5725 | bm-claudeai | bm-claudeai |
+| src/basic_memory/importers/claude_projects_importer.py | Source Code | 5389 | bm-claudeai | bm-claudeai |
+| src/basic_memory/importers/memory_json_importer.py | Source Code | 3986 | bm-claudeai | bm-claudeai, phernandez |
+| src/basic_memory/importers/utils.py | Source Code | 1792 | bm-claudeai | bm-claudeai |
+| src/basic_memory/markdown/__init__.py | Source Code | 501 | phernandez | phernandez |
+| src/basic_memory/markdown/entity_parser.py | Source Code | 4516 | phernandez | phernandez, Paul Hernandez, github-actions[bot] |
+| src/basic_memory/markdown/markdown_processor.py | Source Code | 4968 | phernandez | phernandez, Paul Hernandez |
+| src/basic_memory/markdown/plugins.py | Source Code | 6639 | phernandez | phernandez, Paul Hernandez |
+| src/basic_memory/markdown/schemas.py | Source Code | 1896 | phernandez | phernandez, Paul Hernandez |
+| src/basic_memory/markdown/utils.py | Source Code | 3410 | Paul Hernandez | Paul Hernandez, phernandez |
+| src/basic_memory/mcp/__init__.py | Source Code | 35 | Paul Hernandez | Paul Hernandez |
+| src/basic_memory/mcp/async_client.py | Source Code | 925 | Paul Hernandez | phernandez, Paul Hernandez |
+| src/basic_memory/mcp/project_session.py | Source Code | 4203 | Paul Hernandez | Paul Hernandez, phernandez |
+| src/basic_memory/mcp/prompts/__init__.py | Source Code | 615 | Paul Hernandez | Paul Hernandez |
+| src/basic_memory/mcp/prompts/ai_assistant_guide.py | Source Code | 821 | Paul Hernandez | Paul Hernandez, phernandez |
+| src/basic_memory/mcp/prompts/continue_conversation.py | Source Code | 1998 | Paul Hernandez | Paul Hernandez, github-actions[bot], bm-claudeai |
+| src/basic_memory/mcp/prompts/recent_activity.py | Source Code | 3311 | Paul Hernandez | Paul Hernandez, phernandez, bm-claudeai |
+| src/basic_memory/mcp/prompts/search.py | Source Code | 1692 | Paul Hernandez | Paul Hernandez, bm-claudeai |
+| src/basic_memory/mcp/prompts/utils.py | Source Code | 5431 | Paul Hernandez | Paul Hernandez, bm-claudeai |
+| src/basic_memory/mcp/resources/ai_assistant_guide.md | Other | 14777 | phernandez | phernandez, Paul Hernandez |
+| src/basic_memory/mcp/resources/project_info.py | Source Code | 1906 | Paul Hernandez | Paul Hernandez, bm-claudeai |
+| src/basic_memory/mcp/server.py | Source Code | 1248 | Paul Hernandez | bm-claudeai, phernandez, Paul Hernandez |
+| src/basic_memory/mcp/tools/__init__.py | Source Code | 1619 | Paul Hernandez | phernandez, Paul Hernandez, Drew Cain |
+| src/basic_memory/mcp/tools/auth.py | Source Code | 1231 | phernandez | phernandez |
+| src/basic_memory/mcp/tools/canvas.py | Source Code | 3738 | Paul Hernandez | Paul Hernandez, phernandez, bm-claudeai |
+| src/basic_memory/mcp/tools/delete_note.py | Source Code | 7346 | phernandez | phernandez, Paul Hernandez, bm-claudeai |
+| src/basic_memory/mcp/tools/edit_note.py | Source Code | 13570 | Paul Hernandez | Paul Hernandez, phernandez |
+| src/basic_memory/mcp/tools/list_directory.py | Source Code | 5236 | Paul Hernandez | Paul Hernandez |
+| src/basic_memory/mcp/tools/move_note.py | Source Code | 16708 | phernandez | Paul Hernandez, phernandez |
+| src/basic_memory/mcp/tools/project_management.py | Source Code | 12944 | Paul Hernandez | Paul Hernandez, phernandez, Drew Cain |
+| src/basic_memory/mcp/tools/read_content.py | Source Code | 8596 | Paul Hernandez | Paul Hernandez, bm-claudeai |
+| src/basic_memory/mcp/tools/read_note.py | Source Code | 7614 | Paul Hernandez | Paul Hernandez, bm-claudeai, phernandez, Amadeusz ... |
+| src/basic_memory/mcp/tools/recent_activity.py | Source Code | 4833 | phernandez | Paul Hernandez, phernandez, bm-claudeai |
+| src/basic_memory/mcp/tools/search.py | Source Code | 15883 | phernandez | phernandez, github-actions[bot], Paul Hernandez, D... |
+| src/basic_memory/mcp/tools/sync_status.py | Source Code | 10517 | phernandez | phernandez |
+| src/basic_memory/mcp/tools/utils.py | Source Code | 21426 | Paul Hernandez | Paul Hernandez, phernandez, bm-claudeai |
+| src/basic_memory/mcp/tools/view_note.py | Source Code | 2499 | phernandez | phernandez |
+| src/basic_memory/mcp/tools/write_note.py | Source Code | 6178 | Paul Hernandez | Paul Hernandez, phernandez, bm-claudeai |
+| src/basic_memory/models/__init__.py | Source Code | 333 | phernandez | phernandez, Paul Hernandez, bm-claudeai |
+| src/basic_memory/models/base.py | Source Code | 225 | phernandez | phernandez, Paul Hernandez |
+| src/basic_memory/models/knowledge.py | Source Code | 7087 | phernandez | phernandez, Paul Hernandez, bm-claudeai |
+| src/basic_memory/models/project.py | Source Code | 2773 | bm-claudeai | bm-claudeai, phernandez |
+| src/basic_memory/models/search.py | Source Code | 1300 | phernandez | phernandez, Paul Hernandez, bm-claudeai |
+| src/basic_memory/repository/__init__.py | Source Code | 327 | Paul Hernandez | phernandez, bm-claudeai, Paul Hernandez |
+| src/basic_memory/repository/entity_repository.py | Source Code | 10405 | Drew Cain | phernandez, Paul Hernandez, Drew Cain, bm-claudeai... |
+| src/basic_memory/repository/observation_repository.py | Source Code | 2943 | phernandez | phernandez, bm-claudeai |
+| src/basic_memory/repository/project_info_repository.py | Source Code | 338 | Paul Hernandez | Paul Hernandez, bm-claudeai |
+| src/basic_memory/repository/project_repository.py | Source Code | 3159 | bm-claudeai | bm-claudeai |
+| src/basic_memory/repository/relation_repository.py | Source Code | 3179 | phernandez | phernandez, bm-claudeai |
+| src/basic_memory/repository/repository.py | Source Code | 15224 | phernandez | phernandez, bm-claudeai, Paul Hernandez |
+| src/basic_memory/repository/search_repository.py | Source Code | 21936 | phernandez | phernandez, Paul Hernandez, github-actions[bot], b... |
+| src/basic_memory/schemas/__init__.py | Source Code | 1674 | phernandez | phernandez, Paul Hernandez, bm-claudeai |
+| src/basic_memory/schemas/base.py | Source Code | 6738 | phernandez | phernandez, Paul Hernandez |
+| src/basic_memory/schemas/delete.py | Source Code | 1180 | phernandez | phernandez, Paul Hernandez |
+| src/basic_memory/schemas/directory.py | Source Code | 881 | bm-claudeai | bm-claudeai |
+| src/basic_memory/schemas/importer.py | Source Code | 663 | bm-claudeai | bm-claudeai |
+| src/basic_memory/schemas/memory.py | Source Code | 5833 | phernandez | phernandez, Paul Hernandez, Drew Cain, bm-claudeai... |
+| src/basic_memory/schemas/project_info.py | Source Code | 7047 | Paul Hernandez | Paul Hernandez, bm-claudeai, phernandez |
+| src/basic_memory/schemas/prompt.py | Source Code | 3648 | bm-claudeai | bm-claudeai |
+| src/basic_memory/schemas/request.py | Source Code | 3760 | Paul Hernandez | phernandez, Paul Hernandez |
+| src/basic_memory/schemas/response.py | Source Code | 6450 | phernandez | phernandez, Paul Hernandez |
+| src/basic_memory/schemas/search.py | Source Code | 3657 | phernandez | phernandez, Paul Hernandez, github-actions[bot], b... |
+| src/basic_memory/services/__init__.py | Source Code | 259 | phernandez | phernandez, Paul Hernandez, bm-claudeai |
+| src/basic_memory/services/context_service.py | Source Code | 14462 | bm-claudeai | phernandez, bm-claudeai, Paul Hernandez |
+| src/basic_memory/services/directory_service.py | Source Code | 6017 | bm-claudeai | bm-claudeai, Paul Hernandez |
+| src/basic_memory/services/entity_service.py | Source Code | 30440 | Paul Hernandez | phernandez, Paul Hernandez, bm-claudeai, Drew Cain... |
+| src/basic_memory/services/exceptions.py | Source Code | 390 | phernandez | phernandez, Paul Hernandez, bm-claudeai |
+| src/basic_memory/services/file_service.py | Source Code | 10059 | Paul Hernandez | phernandez, Paul Hernandez, bm-claudeai |
+| src/basic_memory/services/initialization.py | Source Code | 6715 | bm-claudeai | Paul Hernandez, bm-claudeai, Drew Cain, phernandez... |
+| src/basic_memory/services/link_resolver.py | Source Code | 4594 | phernandez | phernandez, Paul Hernandez, bm-claudeai, github-ac... |
+| src/basic_memory/services/project_service.py | Source Code | 28386 | bm-claudeai | bm-claudeai, Paul Hernandez, phernandez |
+| src/basic_memory/services/search_service.py | Source Code | 12782 | phernandez | phernandez, Paul Hernandez, bm-claudeai |
+| src/basic_memory/services/service.py | Source Code | 336 | phernandez | phernandez, Paul Hernandez |
+| src/basic_memory/services/sync_status_service.py | Source Code | 7504 | phernandez | phernandez, Paul Hernandez |
+| src/basic_memory/sync/__init__.py | Source Code | 156 | Paul Hernandez | Paul Hernandez, phernandez |
+| src/basic_memory/sync/background_sync.py | Source Code | 726 | bm-claudeai | bm-claudeai, phernandez |
+| src/basic_memory/sync/sync_service.py | Source Code | 23387 | Paul Hernandez | phernandez, Paul Hernandez, bm-claudeai, github-ac... |
+| src/basic_memory/sync/watch_service.py | Source Code | 15316 | Paul Hernandez | phernandez, bm-claudeai, Paul Hernandez |
+| src/basic_memory/templates/prompts/continue_conversation.hbs | Templates/Resources | 3076 | bm-claudeai | bm-claudeai, Drew Cain |
+| src/basic_memory/templates/prompts/search.hbs | Templates/Resources | 3098 | bm-claudeai | bm-claudeai |
+| src/basic_memory/utils.py | Source Code | 7657 | phernandez | phernandez, Paul Hernandez, andyxinweiminicloud, D... |
+| test-int/conftest.py | Source Code | 8203 | Paul Hernandez | Paul Hernandez, phernandez |
+| test-int/mcp/test_delete_note_integration.py | Source Code | 13175 | Paul Hernandez | Paul Hernandez, phernandez |
+| test-int/mcp/test_edit_note_integration.py | Source Code | 19822 | Paul Hernandez | Paul Hernandez, phernandez |
+| test-int/mcp/test_list_directory_integration.py | Source Code | 14744 | Paul Hernandez | Paul Hernandez, phernandez |
+| test-int/mcp/test_move_note_integration.py | Source Code | 19825 | Paul Hernandez | Paul Hernandez, phernandez |
+| test-int/mcp/test_project_management_integration.py | Source Code | 33175 | Paul Hernandez | Paul Hernandez, phernandez |
+| test-int/mcp/test_project_state_sync_integration.py | Source Code | 7728 | Paul Hernandez | Paul Hernandez, phernandez |
+| test-int/mcp/test_read_content_integration.py | Source Code | 11187 | Paul Hernandez | Paul Hernandez, phernandez |
+| test-int/mcp/test_read_note_integration.py | Source Code | 1381 | Paul Hernandez | Paul Hernandez, phernandez |
+| test-int/mcp/test_search_integration.py | Source Code | 14690 | Paul Hernandez | Paul Hernandez, phernandez |
+| test-int/mcp/test_write_note_integration.py | Source Code | 9472 | Paul Hernandez | Paul Hernandez, phernandez |
+| tests/Non-MarkdownFileSupport.pdf | Other | 106751 | Unknown |  |
+| tests/Screenshot.png | Other | 190076 | Unknown |  |
+| tests/__init__.py | Source Code | 141 | phernandez | phernandez, Paul Hernandez |
+| tests/api/conftest.py | Source Code | 1404 | phernandez | phernandez, bm-claudeai, Paul Hernandez |
+| tests/api/test_async_client.py | Source Code | 1382 | Paul Hernandez | Paul Hernandez, phernandez |
+| tests/api/test_continue_conversation_template.py | Source Code | 5152 | bm-claudeai | bm-claudeai |
+| tests/api/test_directory_router.py | Source Code | 9376 | Paul Hernandez | bm-claudeai, Paul Hernandez |
+| tests/api/test_importer_router.py | Source Code | 16578 | bm-claudeai | bm-claudeai, Paul Hernandez |
+| tests/api/test_knowledge_router.py | Source Code | 45771 | Paul Hernandez | phernandez, bm-claudeai, Paul Hernandez |
+| tests/api/test_management_router.py | Source Code | 6220 | bm-claudeai | bm-claudeai |
+| tests/api/test_memory_router.py | Source Code | 5555 | phernandez | phernandez, bm-claudeai |
+| tests/api/test_project_router.py | Source Code | 5201 | Paul Hernandez | bm-claudeai, Paul Hernandez, phernandez |
+| tests/api/test_project_router_operations.py | Source Code | 1812 | bm-claudeai | bm-claudeai, Paul Hernandez |
+| tests/api/test_prompt_router.py | Source Code | 5046 | bm-claudeai | bm-claudeai |
+| tests/api/test_resource_router.py | Source Code | 13960 | Paul Hernandez | phernandez, Paul Hernandez, bm-claudeai |
+| tests/api/test_search_router.py | Source Code | 6409 | phernandez | phernandez, bm-claudeai, Paul Hernandez, github-ac... |
+| tests/api/test_search_template.py | Source Code | 5258 | bm-claudeai | bm-claudeai |
+| tests/api/test_template_loader.py | Source Code | 8035 | bm-claudeai | bm-claudeai |
+| tests/api/test_template_loader_helpers.py | Source Code | 7445 | bm-claudeai | bm-claudeai |
+| tests/cli/conftest.py | Source Code | 1185 | Paul Hernandez | Paul Hernandez, phernandez |
+| tests/cli/test_cli_tools.py | Source Code | 13528 | Paul Hernandez | Paul Hernandez, phernandez, bm-claudeai |
+| tests/cli/test_import_chatgpt.py | Source Code | 6719 | Paul Hernandez | Paul Hernandez, bm-claudeai, phernandez |
+| tests/cli/test_import_claude_conversations.py | Source Code | 5028 | Paul Hernandez | Paul Hernandez, bm-claudeai, phernandez |
+| tests/cli/test_import_claude_projects.py | Source Code | 4585 | Paul Hernandez | Paul Hernandez, bm-claudeai, phernandez |
+| tests/cli/test_import_memory_json.py | Source Code | 3532 | Paul Hernandez | Paul Hernandez, phernandez, bm-claudeai |
+| tests/cli/test_project_commands.py | Source Code | 5143 | bm-claudeai | bm-claudeai, Paul Hernandez, phernandez |
+| tests/cli/test_project_info.py | Source Code | 3874 | phernandez | Paul Hernandez, phernandez |
+| tests/cli/test_status.py | Source Code | 4160 | Paul Hernandez | Paul Hernandez, phernandez, bm-claudeai |
+| tests/cli/test_sync.py | Source Code | 3864 | Paul Hernandez | Paul Hernandez, phernandez, bm-claudeai |
+| tests/cli/test_version.py | Source Code | 289 | Paul Hernandez | Paul Hernandez |
+| tests/conftest.py | Source Code | 15286 | phernandez | phernandez, Paul Hernandez, bm-claudeai |
+| tests/importers/test_importer_base.py | Source Code | 4329 | bm-claudeai | bm-claudeai |
+| tests/importers/test_importer_utils.py | Source Code | 1827 | bm-claudeai | bm-claudeai |
+| tests/markdown/__init__.py | Source Code | 0 | Unknown |  |
+| tests/markdown/test_entity_parser.py | Source Code | 8669 | phernandez | phernandez, Paul Hernandez, github-actions[bot] |
+| tests/markdown/test_markdown_plugins.py | Source Code | 5139 | Paul Hernandez | Paul Hernandez, phernandez |
+| tests/markdown/test_markdown_processor.py | Source Code | 5728 | phernandez | phernandez, Paul Hernandez |
+| tests/markdown/test_observation_edge_cases.py | Source Code | 4295 | phernandez | phernandez |
+| tests/markdown/test_parser_edge_cases.py | Source Code | 5142 | phernandez | phernandez |
+| tests/markdown/test_relation_edge_cases.py | Source Code | 3952 | phernandez | phernandez |
+| tests/markdown/test_task_detection.py | Source Code | 401 | Paul Hernandez | Paul Hernandez |
+| tests/mcp/conftest.py | Source Code | 1761 | phernandez | phernandez, Paul Hernandez, bm-claudeai |
+| tests/mcp/test_prompts.py | Source Code | 5989 | Paul Hernandez | Paul Hernandez, bm-claudeai, phernandez |
+| tests/mcp/test_resource_project_info.py | Source Code | 4885 | Paul Hernandez | Paul Hernandez, bm-claudeai, phernandez |
+| tests/mcp/test_resources.py | Source Code | 549 | Paul Hernandez | Paul Hernandez, phernandez |
+| tests/mcp/test_tool_canvas.py | Source Code | 7997 | Paul Hernandez | Paul Hernandez, phernandez |
+| tests/mcp/test_tool_delete_note.py | Source Code | 4208 | phernandez | phernandez |
+| tests/mcp/test_tool_edit_note.py | Source Code | 13503 | Paul Hernandez | Paul Hernandez, phernandez, Drew Cain |
+| tests/mcp/test_tool_list_directory.py | Source Code | 7730 | Paul Hernandez | Paul Hernandez, phernandez |
+| tests/mcp/test_tool_move_note.py | Source Code | 16346 | Paul Hernandez | Paul Hernandez, phernandez |
+| tests/mcp/test_tool_read_note.py | Source Code | 9741 | Paul Hernandez | Paul Hernandez, phernandez, github-actions[bot], A... |
+| tests/mcp/test_tool_recent_activity.py | Source Code | 3983 | phernandez | phernandez, bm-claudeai |
+| tests/mcp/test_tool_resource.py | Source Code | 6782 | Paul Hernandez | Paul Hernandez, phernandez, github-actions[bot] |
+| tests/mcp/test_tool_search.py | Source Code | 10959 | phernandez | Paul Hernandez, phernandez, github-actions[bot], D... |
+| tests/mcp/test_tool_sync_status.py | Source Code | 6331 | phernandez | phernandez |
+| tests/mcp/test_tool_utils.py | Source Code | 9228 | Paul Hernandez | Paul Hernandez, phernandez, bm-claudeai |
+| tests/mcp/test_tool_view_note.py | Source Code | 10004 | phernandez | phernandez |
+| tests/mcp/test_tool_write_note.py | Source Code | 19537 | Paul Hernandez | phernandez, Paul Hernandez, Drew Cain |
+| tests/repository/test_entity_repository.py | Source Code | 15498 | phernandez | phernandez, bm-claudeai, Paul Hernandez |
+| tests/repository/test_entity_repository_upsert.py | Source Code | 16983 | Drew Cain | Drew Cain, phernandez |
+| tests/repository/test_observation_repository.py | Source Code | 11786 | phernandez | phernandez, bm-claudeai |
+| tests/repository/test_project_info_repository.py | Source Code | 1186 | bm-claudeai | bm-claudeai |
+| tests/repository/test_project_repository.py | Source Code | 9455 | bm-claudeai | bm-claudeai |
+| tests/repository/test_relation_repository.py | Source Code | 11980 | phernandez | phernandez, bm-claudeai |
+| tests/repository/test_repository.py | Source Code | 5996 | phernandez | phernandez, Paul Hernandez |
+| tests/repository/test_search_repository.py | Source Code | 25471 | bm-claudeai | bm-claudeai, phernandez, Paul Hernandez |
+| tests/schemas/test_memory_url.py | Source Code | 2000 | phernandez | phernandez, Paul Hernandez |
+| tests/schemas/test_memory_url_validation.py | Source Code | 9338 | phernandez | phernandez |
+| tests/schemas/test_schemas.py | Source Code | 16880 | phernandez | phernandez, Paul Hernandez, bm-claudeai, Drew Cain... |
+| tests/schemas/test_search.py | Source Code | 3264 | phernandez | phernandez, Paul Hernandez, github-actions[bot] |
+| tests/services/test_context_service.py | Source Code | 8833 | phernandez | phernandez, bm-claudeai, Paul Hernandez |
+| tests/services/test_directory_service.py | Source Code | 6854 | Paul Hernandez | bm-claudeai, Paul Hernandez |
+| tests/services/test_entity_service.py | Source Code | 59278 | Paul Hernandez | phernandez, Paul Hernandez, bm-claudeai, Drew Cain... |
+| tests/services/test_file_service.py | Source Code | 5243 | phernandez | phernandez |
+| tests/services/test_initialization.py | Source Code | 6939 | bm-claudeai | Paul Hernandez, bm-claudeai, phernandez |
+| tests/services/test_link_resolver.py | Source Code | 13618 | phernandez | phernandez, Paul Hernandez, bm-claudeai |
+| tests/services/test_project_service.py | Source Code | 23576 | phernandez | bm-claudeai, Paul Hernandez, phernandez |
+| tests/services/test_project_service_operations.py | Source Code | 4679 | bm-claudeai | bm-claudeai, Paul Hernandez |
+| tests/services/test_search_service.py | Source Code | 25299 | Paul Hernandez | phernandez, Paul Hernandez, github-actions[bot] |
+| tests/services/test_sync_status_service.py | Source Code | 9926 | phernandez | phernandez, Paul Hernandez |
+| tests/sync/test_sync_service.py | Source Code | 39659 | phernandez | phernandez, Paul Hernandez, bm-claudeai |
+| tests/sync/test_sync_wikilink_issue.py | Source Code | 1959 | github-actions[bot] | github-actions[bot], Paul Hernandez |
+| tests/sync/test_tmp_files.py | Source Code | 5930 | Paul Hernandez | Paul Hernandez, bm-claudeai, phernandez |
+| tests/sync/test_watch_service.py | Source Code | 14076 | Paul Hernandez | Paul Hernandez, phernandez, bm-claudeai |
+| tests/sync/test_watch_service_edge_cases.py | Source Code | 2169 | Paul Hernandez | Paul Hernandez, bm-claudeai |
+| tests/test_config.py | Source Code | 3680 | Drew Cain | Drew Cain |
+| tests/test_db_migration_deduplication.py | Source Code | 6166 | Paul Hernandez | Paul Hernandez, Drew Cain, phernandez |
+| tests/utils/test_file_utils.py | Source Code | 6199 | phernandez | phernandez, Paul Hernandez |
+| tests/utils/test_parse_tags.py | Source Code | 1691 | github-actions[bot] | github-actions[bot], Paul Hernandez |
+| tests/utils/test_permalink_formatting.py | Source Code | 4193 | phernandez | phernandez, Paul Hernandez |
+| tests/utils/test_utf8_handling.py | Source Code | 5791 | phernandez | phernandez, Paul Hernandez |
@@ -0,0 +1,128 @@
+# Basic Memory Installation Guide for LLMs
+
+This guide is specifically designed to help AI assistants like Cline install and configure Basic Memory. Follow these
+steps in order.
+
+## Installation Steps
+
+### 1. Install Basic Memory Package
+
+Use one of the following package managers to install:
+
+```bash
+# Install with uv (recommended)
+uv tool install basic-memory
+
+# Or with pip
+pip install basic-memory
+```
+
+### 2. Configure MCP Server
+
+Add the following to your config:
+
+```json
+{
+  "mcpServers": {
+    "basic-memory": {
+      "command": "uvx",
+      "args": [
+        "basic-memory",
+        "mcp"
+      ]
+    }
+  }
+}
+```
+
+For Claude Desktop, this file is located at:
+
+macOS: ~/Library/Application Support/Claude/claude_desktop_config.json
+Windows: %APPDATA%\Claude\claude_desktop_config.json
+
+### 3. Start Synchronization (optional)
+
+To synchronize files in real-time, run:
+
+```bash
+basic-memory sync --watch
+```
+
+Or for a one-time sync:
+
+```bash
+basic-memory sync
+```
+
+## Configuration Options
+
+### Custom Directory
+
+To use a directory other than the default `~/basic-memory`:
+
+```bash
+basic-memory project add custom-project /path/to/your/directory
+basic-memory project default custom-project
+```
+
+### Multiple Projects
+
+To manage multiple knowledge bases:
+
+```bash
+# List all projects
+basic-memory project list
+
+# Add a new project
+basic-memory project add work ~/work-basic-memory
+
+# Set default project
+basic-memory project default work
+```
+
+## Importing Existing Data
+
+### From Claude.ai
+
+```bash
+basic-memory import claude conversations path/to/conversations.json
+basic-memory import claude projects path/to/projects.json
+```
+
+### From ChatGPT
+
+```bash
+basic-memory import chatgpt path/to/conversations.json
+```
+
+### From MCP Memory Server
+
+```bash
+basic-memory import memory-json path/to/memory.json
+```
+
+## Troubleshooting
+
+If you encounter issues:
+
+1. Check that Basic Memory is properly installed:
+   ```bash
+   basic-memory --version
+   ```
+
+2. Verify the sync process is running:
+   ```bash
+   ps aux | grep basic-memory
+   ```
+
+3. Check sync output for errors:
+   ```bash
+   basic-memory sync --verbose
+   ```
+
+4. Check log output:
+   ```bash
+   cat ~/.basic-memory/basic-memory.log
+   ```
+
+For more detailed information, refer to the [full documentation](https://memory.basicmachines.co/).
@@ -1,6 +1,6 @@
 [project]
 name = "basic-memory"
-version = "0.2.19"
+dynamic = ["version"]
 description = "Local-first knowledge management combining Zettelkasten with knowledge graphs"
 readme = "README.md"
 requires-python = ">=3.12.1"
@@ -28,7 +28,12 @@ dependencies = [
    "watchfiles>=1.0.4",
    "fastapi[standard]>=0.115.8",
    "alembic>=1.14.1",
-    "qasync>=0.27.1",
+    "pillow>=11.1.0",
+    "pybars3>=0.9.7",
+    "fastmcp==2.10.2",
+    "pyjwt>=2.10.1",
+    "python-dotenv>=1.1.0",
+    "pytest-aio>=1.9.0",
 ]


@@ -39,14 +44,15 @@ Documentation = "https://github.com/basicmachines-co/basic-memory#readme"

 [project.scripts]
 basic-memory = "basic_memory.cli.main:app"
+bm = "basic_memory.cli.main:app"

 [build-system]
-requires = ["hatchling"]
+requires = ["hatchling", "uv-dynamic-versioning>=0.7.0"]
 build-backend = "hatchling.build"

 [tool.pytest.ini_options]
 pythonpath = ["src", "tests"]
-addopts = "--cov=basic_memory --cov-report term-missing -ra -q"
+addopts = "--cov=basic_memory --cov-report term-missing"
 testpaths = ["tests"]
 asyncio_mode = "strict"
 asyncio_default_fixture_loop_scope = "function"
@@ -63,16 +69,19 @@ dev-dependencies = [
    "pytest-cov>=4.1.0",
    "pytest-mock>=3.12.0",
    "pytest-asyncio>=0.24.0",
+    "pytest-xdist>=3.0.0",
    "ruff>=0.1.6",
-    "pytest>=8.3.4",
-    "pytest-cov>=4.1.0",
-    "pytest-mock>=3.12.0",
-    "pytest-asyncio>=0.24.0",
-    "ruff>=0.1.6",
-    "cx-freeze>=7.2.10",
-    "pyqt6>=6.8.1",
 ]

+[tool.hatch.version]
+source = "uv-dynamic-versioning"
+
+[tool.uv-dynamic-versioning]
+vcs = "git"
+style = "pep440"
+bump = true
+fallback-version = "0.0.0"
+
 [tool.pyright]
 include = ["src/"]
 exclude = ["**/__pycache__"]
@@ -83,18 +92,35 @@ reportMissingTypeStubs = false
 pythonVersion = "3.12"


-[tool.semantic_release]
-version_variable = "src/basic_memory/__init__.py:__version__"
-version_toml = [
-    "pyproject.toml:project.version",
-]
-major_on_zero = false
-branch = "main"
-changelog_file = "CHANGELOG.md"
-build_command = "pip install uv && uv build"
-dist_path = "dist/"
-upload_to_pypi = true
-commit_message = "chore(release): {version} [skip ci]"

 [tool.coverage.run]
 concurrency = ["thread", "gevent"]
+
+[tool.coverage.report]
+exclude_lines = [
+    "pragma: no cover",
+    "def __repr__",
+    "if self.debug:",
+    "if settings.DEBUG",
+    "raise AssertionError",
+    "raise NotImplementedError",
+    "if 0:",
+    "if __name__ == .__main__.:",
+    "class .*\\bProtocol\\):",
+    "@(abc\\.)?abstractmethod",
+]
+
+# Exclude specific modules that are difficult to test comprehensively
+omit = [
+    "*/external_auth_provider.py",  # External HTTP calls to OAuth providers
+    "*/supabase_auth_provider.py",  # External HTTP calls to Supabase APIs
+    "*/watch_service.py",           # File system watching - complex integration testing
+    "*/background_sync.py",         # Background processes
+    "*/cli/main.py",               # CLI entry point
+    "*/mcp/tools/project_management.py",  # Covered by integration tests
+    "*/mcp/tools/sync_status.py",  # Covered by integration tests
+    "*/services/migration_service.py", # Complex migration scenarios
+]
+
+[tool.logfire]
+ignore_no_config = true
@@ -0,0 +1,483 @@
+#!/usr/bin/env python3
+"""
+Legal File Inventory Generator for Basic Memory
+
+Generates comprehensive file inventory with contributor information
+for legal documentation, copyright assignments, and due diligence.
+
+Usage:
+    python scripts/generate_legal_inventory.py [options]
+
+Output formats:
+    - CSV: Detailed spreadsheet for analysis
+    - JSON: Structured data for integration
+    - Markdown: Human-readable legal report
+"""
+
+import argparse
+import csv
+import hashlib
+import json
+import subprocess
+from collections import defaultdict
+from datetime import datetime
+from pathlib import Path
+from typing import Dict, List
+
+
+class LegalInventoryGenerator:
+    """Generate comprehensive file inventory for legal documentation."""
+    
+    # Files to exclude from legal inventory
+    EXCLUDED_PATTERNS = {
+        # Generated/compiled files
+        '*.pyc', '*.pyo', '*.pyd', '__pycache__',
+        '*.so', '*.dylib', '*.dll',
+        
+        # Build/cache directories
+        'build/', 'dist/', '.eggs/', '*.egg-info/',
+        '.coverage', '.pytest_cache/', '.mypy_cache/',
+        '.ruff_cache/', '.tox/', 'venv/', '.venv/', 'env/', '.env/',
+        'node_modules/', '.npm/', '.yarn/',
+        
+        # IDE and editor files
+        '.vscode/', '.idea/', '*.swp', '*.swo', '*~',
+        '.DS_Store', 'Thumbs.db',
+        
+        # Version control
+        '.git/', '.gitignore',
+        
+        # OS generated
+        'desktop.ini', '*.tmp', '*.temp'
+    }
+    
+    # File categories for legal classification
+    FILE_CATEGORIES = {
+        'source_code': ['.py', '.pyx', '.pyi'],
+        'documentation': ['.md', '.rst', '.txt'],
+        'configuration': ['.toml', '.yaml', '.yml', '.json', '.ini', '.cfg'],
+        'legal': ['LICENSE', 'COPYING', 'COPYRIGHT', '.md'],
+        'build_deployment': ['Dockerfile', 'Makefile', 'justfile', '.sh'],
+        'database': ['.sql', '.sqlite', '.db'],
+        'templates': ['.j2', '.jinja2', '.hbs', '.handlebars'],
+        'data': ['.csv', '.json', '.xml'],
+        'other': []  # Catch-all for uncategorized files
+    }
+    
+    def __init__(self, repo_path: str = "."):
+        """Initialize generator with repository path."""
+        self.repo_path = Path(repo_path).resolve()
+        self.file_inventory: List[Dict] = []
+        self.contributors: Dict[str, Dict] = defaultdict(lambda: {
+            'email': '', 'commits': 0, 'lines_added': 0, 'files': set()
+        })
+        
+    def should_exclude_file(self, file_path: Path) -> bool:
+        """Check if file should be excluded from inventory."""
+        # Check if file is tracked by git (more efficient than check-ignore)
+        try:
+            rel_path = str(file_path.relative_to(self.repo_path))
+            result = subprocess.run([
+                'git', 'ls-files', '--error-unmatch', rel_path
+            ], capture_output=True, cwd=self.repo_path)
+            
+            # If git ls-files returns non-zero, file is not tracked (likely ignored)
+            if result.returncode != 0:
+                return True
+                
+        except Exception:
+            # Fallback to manual exclusion patterns if git fails
+            pass
+        
+        # Additional manual exclusions for safety
+        file_str = str(file_path.relative_to(self.repo_path))
+        
+        for pattern in self.EXCLUDED_PATTERNS:
+            if pattern.endswith('/'):
+                if any(part == pattern[:-1] for part in file_path.parts):
+                    return True
+            elif '*' in pattern:
+                import fnmatch
+                if fnmatch.fnmatch(file_str, pattern):
+                    return True
+            else:
+                if file_path.name == pattern or file_str == pattern:
+                    return True
+        return False
+    
+    def categorize_file(self, file_path: Path) -> str:
+        """Categorize file based on extension and name."""
+        suffix = file_path.suffix.lower()
+        name = file_path.name.upper()
+        
+        # Check legal files by name first
+        if any(legal in name for legal in ['LICENSE', 'COPYING', 'COPYRIGHT', 'CLA']):
+            return 'legal'
+            
+        # Check by extension
+        for category, extensions in self.FILE_CATEGORIES.items():
+            if suffix in extensions:
+                return category
+                
+        return 'other'
+    
+    def get_file_hash(self, file_path: Path) -> str:
+        """Generate SHA-256 hash of file content."""
+        try:
+            with open(file_path, 'rb') as f:
+                return hashlib.sha256(f.read()).hexdigest()
+        except (IOError, OSError):
+            return "ERROR_READING_FILE"
+    
+    def get_git_contributors(self, file_path: Path) -> List[Dict]:
+        """Get contributor information for a specific file."""
+        try:
+            rel_path = file_path.relative_to(self.repo_path)
+            
+            # Get contributors with line counts
+            result = subprocess.run([
+                'git', 'log', '--follow', '--pretty=format:%an|%ae|%ad|%H',
+                '--date=short', '--', str(rel_path)
+            ], capture_output=True, text=True, cwd=self.repo_path)
+            
+            if result.returncode != 0:
+                return []
+                
+            contributors = []
+            seen = set()
+            
+            for line in result.stdout.strip().split('\n'):
+                if not line:
+                    continue
+                    
+                parts = line.split('|')
+                if len(parts) >= 4:
+                    name, email, date, commit_hash = parts[:4]
+                    
+                    # Normalize author names/emails
+                    normalized_name = self.normalize_author_name(name, email)
+                    
+                    if normalized_name not in seen:
+                        contributors.append({
+                            'name': normalized_name,
+                            'email': email,
+                            'first_contribution': date,
+                            'commit_hash': commit_hash
+                        })
+                        seen.add(normalized_name)
+                        
+            return contributors
+            
+        except Exception as e:
+            print(f"Warning: Could not get git info for {file_path}: {e}")
+            return []
+    
+    def normalize_author_name(self, name: str, email: str) -> str:
+        """Normalize author names to handle multiple emails for same person."""
+        # Known mappings for Basic Memory team
+        name_mappings = {
+            'phernandez': 'Paul Hernandez',
+            'Paul Hernandez': 'Paul Hernandez',
+            'drew-cain': 'Drew Cain',
+            'Drew Cain': 'Drew Cain'
+        }
+        
+        # Handle GitHub bot accounts
+        if 'bot' in name.lower() or 'claude' in name.lower():
+            return f"{name} (AI Assistant)"
+            
+        return name_mappings.get(name, name)
+    
+    def get_file_stats(self, file_path: Path) -> Dict:
+        """Get comprehensive file statistics."""
+        try:
+            stat = file_path.stat()
+            rel_path = file_path.relative_to(self.repo_path)
+            
+            # Basic file info
+            file_info = {
+                'path': str(rel_path),
+                'name': file_path.name,
+                'size_bytes': stat.st_size,
+                'modified_time': datetime.fromtimestamp(stat.st_mtime).isoformat(),
+                'category': self.categorize_file(file_path),
+                'sha256_hash': self.get_file_hash(file_path)
+            }
+            
+            # Git information
+            contributors = self.get_git_contributors(file_path)
+            file_info['contributors'] = contributors
+            file_info['primary_author'] = contributors[0]['name'] if contributors else 'Unknown'
+            file_info['contributor_count'] = len(contributors)
+            
+            # Update global contributor stats
+            for contrib in contributors:
+                name = contrib['name']
+                self.contributors[name]['email'] = contrib['email']
+                self.contributors[name]['files'].add(str(rel_path))
+                
+            return file_info
+            
+        except Exception as e:
+            print(f"Error processing {file_path}: {e}")
+            return None
+    
+    def scan_repository(self) -> None:
+        """Scan repository and build file inventory."""
+        print(f"Scanning repository: {self.repo_path}")
+        
+        # Get all git-tracked files first (much more efficient)
+        try:
+            result = subprocess.run([
+                'git', 'ls-files'
+            ], capture_output=True, text=True, cwd=self.repo_path)
+            
+            if result.returncode == 0:
+                tracked_files = [self.repo_path / f for f in result.stdout.strip().split('\n') if f]
+                print(f"Found {len(tracked_files)} git-tracked files")
+                
+                for file_path in tracked_files:
+                    if file_path.is_file():
+                        file_info = self.get_file_stats(file_path)
+                        if file_info:
+                            self.file_inventory.append(file_info)
+            else:
+                print("Warning: Could not get git tracked files, falling back to directory scan")
+                self._fallback_scan()
+                
+        except Exception as e:
+            print(f"Warning: Git command failed ({e}), falling back to directory scan")
+            self._fallback_scan()
+        
+        # Get global git stats
+        self._get_global_git_stats()
+        
+        print(f"Processed {len(self.file_inventory)} files")
+        print(f"Found {len(self.contributors)} contributors")
+    
+    def _fallback_scan(self) -> None:
+        """Fallback directory scan if git commands fail."""
+        for file_path in self.repo_path.rglob('*'):
+            if file_path.is_file() and not self.should_exclude_file(file_path):
+                file_info = self.get_file_stats(file_path)
+                if file_info:
+                    self.file_inventory.append(file_info)
+    
+    def _get_global_git_stats(self) -> None:
+        """Get global contributor statistics from git."""
+        try:
+            # Get commit counts per author
+            result = subprocess.run([
+                'git', 'shortlog', '-sn', '--all'
+            ], capture_output=True, text=True, cwd=self.repo_path)
+            
+            if result.returncode == 0:
+                for line in result.stdout.strip().split('\n'):
+                    if line.strip():
+                        parts = line.strip().split('\t', 1)
+                        if len(parts) == 2:
+                            count, name = parts
+                            normalized_name = self.normalize_author_name(name, '')
+                            self.contributors[normalized_name]['commits'] = int(count)
+                            
+        except Exception as e:
+            print(f"Warning: Could not get global git stats: {e}")
+    
+    def generate_summary(self) -> Dict:
+        """Generate inventory summary statistics."""
+        total_files = len(self.file_inventory)
+        total_size = sum(f['size_bytes'] for f in self.file_inventory)
+        
+        # Category breakdown
+        categories = defaultdict(int)
+        for file_info in self.file_inventory:
+            categories[file_info['category']] += 1
+        
+        # Top contributors
+        top_contributors = sorted(
+            self.contributors.items(),
+            key=lambda x: len(x[1]['files']),
+            reverse=True
+        )[:10]
+        
+        return {
+            'scan_date': datetime.now().isoformat(),
+            'repository_path': str(self.repo_path),
+            'total_files': total_files,
+            'total_size_bytes': total_size,
+            'categories': dict(categories),
+            'contributor_count': len(self.contributors),
+            'top_contributors': [
+                {
+                    'name': name,
+                    'file_count': len(stats['files']),
+                    'commit_count': stats['commits'],
+                    'email': stats['email']
+                }
+                for name, stats in top_contributors
+            ]
+        }
+    
+    def export_csv(self, output_path: str) -> None:
+        """Export inventory to CSV format."""
+        with open(output_path, 'w', newline='', encoding='utf-8') as csvfile:
+            fieldnames = [
+                'path', 'name', 'category', 'size_bytes', 'modified_time',
+                'primary_author', 'contributor_count', 'contributors_list',
+                'sha256_hash'
+            ]
+            
+            writer = csv.DictWriter(csvfile, fieldnames=fieldnames)
+            writer.writeheader()
+            
+            for file_info in sorted(self.file_inventory, key=lambda x: x['path']):
+                contributors_list = '; '.join([
+                    f"{c['name']} ({c['email']})" for c in file_info['contributors']
+                ])
+                
+                writer.writerow({
+                    'path': file_info['path'],
+                    'name': file_info['name'],
+                    'category': file_info['category'],
+                    'size_bytes': file_info['size_bytes'],
+                    'modified_time': file_info['modified_time'],
+                    'primary_author': file_info['primary_author'],
+                    'contributor_count': file_info['contributor_count'],
+                    'contributors_list': contributors_list,
+                    'sha256_hash': file_info['sha256_hash']
+                })
+        
+        print(f"CSV export saved to: {output_path}")
+    
+    def export_json(self, output_path: str) -> None:
+        """Export inventory to JSON format."""
+        # Convert sets to lists for JSON serialization
+        contributors_serializable = {}
+        for name, stats in self.contributors.items():
+            contributors_serializable[name] = {
+                'email': stats['email'],
+                'commits': stats['commits'],
+                'lines_added': stats['lines_added'],
+                'files': list(stats['files'])
+            }
+        
+        data = {
+            'summary': self.generate_summary(),
+            'files': self.file_inventory,
+            'contributors': contributors_serializable
+        }
+        
+        with open(output_path, 'w', encoding='utf-8') as jsonfile:
+            json.dump(data, jsonfile, indent=2, ensure_ascii=False)
+        
+        print(f"JSON export saved to: {output_path}")
+    
+    def export_markdown(self, output_path: str) -> None:
+        """Export inventory to Markdown format for legal documentation."""
+        summary = self.generate_summary()
+        
+        with open(output_path, 'w', encoding='utf-8') as mdfile:
+            mdfile.write("# Basic Memory - Legal File Inventory\n\n")
+            
+            # Summary section
+            mdfile.write("## Summary\n\n")
+            mdfile.write(f"**Scan Date:** {summary['scan_date']}\n")
+            mdfile.write(f"**Repository:** {summary['repository_path']}\n")
+            mdfile.write(f"**Total Files:** {summary['total_files']:,}\n")
+            mdfile.write(f"**Total Size:** {summary['total_size_bytes']:,} bytes\n")
+            mdfile.write(f"**Contributors:** {summary['contributor_count']}\n\n")
+            
+            # Category breakdown
+            mdfile.write("## File Categories\n\n")
+            for category, count in sorted(summary['categories'].items()):
+                mdfile.write(f"- **{category.replace('_', ' ').title()}:** {count} files\n")
+            mdfile.write("\n")
+            
+            # Top contributors
+            mdfile.write("## Contributors\n\n")
+            for contrib in summary['top_contributors']:
+                mdfile.write(f"- **{contrib['name']}** ({contrib['email']}): ")
+                mdfile.write(f"{contrib['file_count']} files, {contrib['commit_count']} commits\n")
+            mdfile.write("\n")
+            
+            # Detailed file listing by category
+            mdfile.write("## Detailed File Inventory\n\n")
+            
+            for category in sorted(summary['categories'].keys()):
+                category_files = [f for f in self.file_inventory if f['category'] == category]
+                if not category_files:
+                    continue
+                    
+                mdfile.write(f"### {category.replace('_', ' ').title()}\n\n")
+                
+                for file_info in sorted(category_files, key=lambda x: x['path']):
+                    mdfile.write(f"**{file_info['path']}**\n")
+                    mdfile.write(f"- Primary Author: {file_info['primary_author']}\n")
+                    mdfile.write(f"- Contributors: {file_info['contributor_count']}\n")
+                    mdfile.write(f"- Size: {file_info['size_bytes']:,} bytes\n")
+                    
+                    if file_info['contributors']:
+                        contributors_str = ', '.join([c['name'] for c in file_info['contributors']])
+                        mdfile.write(f"- All Contributors: {contributors_str}\n")
+                    
+                    mdfile.write(f"- SHA-256: `{file_info['sha256_hash']}`\n\n")
+        
+        print(f"Markdown export saved to: {output_path}")
+
+
+def main():
+    """Main entry point."""
+    parser = argparse.ArgumentParser(
+        description="Generate legal file inventory for Basic Memory repository"
+    )
+    parser.add_argument(
+        '--repo-path', '-r',
+        default='.',
+        help='Path to repository (default: current directory)'
+    )
+    parser.add_argument(
+        '--output-dir', '-o',
+        default='./legal_inventory',
+        help='Output directory for reports (default: ./legal_inventory)'
+    )
+    parser.add_argument(
+        '--formats', '-f',
+        nargs='+',
+        choices=['csv', 'json', 'markdown', 'all'],
+        default=['all'],
+        help='Output formats to generate (default: all)'
+    )
+    
+    args = parser.parse_args()
+    
+    # Create output directory
+    output_dir = Path(args.output_dir)
+    output_dir.mkdir(exist_ok=True)
+    
+    # Generate inventory
+    generator = LegalInventoryGenerator(args.repo_path)
+    generator.scan_repository()
+    
+    # Determine formats to export
+    formats = args.formats
+    if 'all' in formats:
+        formats = ['csv', 'json', 'markdown']
+    
+    # Export in requested formats
+    timestamp = datetime.now().strftime('%Y%m%d_%H%M%S')
+    
+    if 'csv' in formats:
+        generator.export_csv(output_dir / f'basic_memory_inventory_{timestamp}.csv')
+    
+    if 'json' in formats:
+        generator.export_json(output_dir / f'basic_memory_inventory_{timestamp}.json')
+    
+    if 'markdown' in formats:
+        generator.export_markdown(output_dir / f'basic_memory_inventory_{timestamp}.md')
+    
+    print("\nLegal inventory generation complete!")
+    print(f"Output saved to: {output_dir}")
+
+
+if __name__ == '__main__':
+    main()
@@ -1,36 +0,0 @@
-#!/bin/bash
-set -e
-
-echo "Welcome to Basic Memory installer"
-
-# 1. Install uv if not present
-if ! command -v uv &> /dev/null; then
-    echo "Installing uv package manager..."
-    curl -LsSf https://github.com/astral-sh/uv/releases/download/0.1.23/uv-installer.sh | sh
-fi
-
-# 2. Configure Claude Desktop
-echo "Configuring Claude Desktop..."
-CONFIG_FILE="$HOME/Library/Application Support/Claude/claude_desktop_config.json"
-
-# Create config directory if it doesn't exist
-mkdir -p "$(dirname "$CONFIG_FILE")"
-
-# If config file doesn't exist, create it with initial structure
-if [ ! -f "$CONFIG_FILE" ]; then
-    echo '{"mcpServers": {}}' > "$CONFIG_FILE"
-fi
-
-# Add/update the basic-memory config using jq
-jq '.mcpServers."basic-memory" = {
-    "command": "uvx",
-    "args": ["basic-memory"]
-}' "$CONFIG_FILE" > "$CONFIG_FILE.tmp" && mv "$CONFIG_FILE.tmp" "$CONFIG_FILE"
-
-echo "Installation complete! Basic Memory is now available in Claude Desktop."
-echo "Please restart Claude Desktop for changes to take effect."
-
-echo -e "\nQuick Start:"
-echo "1. You can run sync directly using: uvx basic-memory sync"
-echo "2. Optionally, install globally with: uv pip install basic-memory"
-echo -e "\nBuilt with ♥️ by Basic Machines."
@@ -0,0 +1,15 @@
+# Smithery configuration file: https://smithery.ai/docs/config#smitheryyaml
+
+startCommand:
+  type: stdio
+  configSchema:
+    # JSON Schema defining the configuration options for the MCP.
+    type: object
+    properties: {}
+    description: No configuration required. This MCP server runs using the default command.
+  commandFunction: |-
+    (config) => ({
+      command: 'basic-memory',
+      args: ['mcp']
+    })
+  exampleConfig: {}
@@ -1,3 +1,7 @@
 """basic-memory - Local-first knowledge management combining Zettelkasten with knowledge graphs"""

-__version__ = "0.0.1"
+# Package version - updated by release automation
+__version__ = "0.14.4"
+
+# API version for FastAPI - independent of package version
+__api_version__ = "v0"
@@ -1 +0,0 @@
-Generic single-database configuration.
@@ -3,7 +3,7 @@
 [alembic]
 # path to migration scripts
 # Use forward slashes (/) also on windows to provide an os agnostic path
-script_location = src/basic_memory/alembic
+script_location = .

 # template used to generate migration file names; The default value is %%(rev)s_%%(slug)s
 # Uncomment the line below if you want the files to be prepended with date and time
@@ -1,5 +1,6 @@
 """Alembic environment configuration."""

+import os
 from logging.config import fileConfig

 from sqlalchemy import engine_from_config
@@ -7,17 +8,25 @@ from sqlalchemy import pool

 from alembic import context

-from basic_memory.models import Base
-from basic_memory.config import config as app_config
+from basic_memory.config import ConfigManager
+
+# set config.env to "test" for pytest to prevent logging to file in utils.setup_logging()
+os.environ["BASIC_MEMORY_ENV"] = "test"
+
+# Import after setting environment variable  # noqa: E402
+from basic_memory.models import Base  # noqa: E402

 # this is the Alembic Config object, which provides
 # access to the values within the .ini file in use.
 config = context.config

+app_config = ConfigManager().config
 # Set the SQLAlchemy URL from our app config
 sqlalchemy_url = f"sqlite:///{app_config.database_path}"
 config.set_main_option("sqlalchemy.url", sqlalchemy_url)

+# print(f"Using SQLAlchemy URL: {sqlalchemy_url}")
+
 # Interpret the config file for Python logging.
 if config.config_file_name is not None:
    fileConfig(config.config_file_name)
@@ -27,6 +36,14 @@ if config.config_file_name is not None:
 target_metadata = Base.metadata


+# Add this function to tell Alembic what to include/exclude
+def include_object(object, name, type_, reflected, compare_to):
+    # Ignore SQLite FTS tables
+    if type_ == "table" and name.startswith("search_index"):
+        return False
+    return True
+
+
 def run_migrations_offline() -> None:
    """Run migrations in 'offline' mode.

@@ -44,6 +61,8 @@ def run_migrations_offline() -> None:
        target_metadata=target_metadata,
        literal_binds=True,
        dialect_opts={"paramstyle": "named"},
+        include_object=include_object,
+        render_as_batch=True,
    )

    with context.begin_transaction():
@@ -63,7 +82,12 @@ def run_migrations_online() -> None:
    )

    with connectable.connect() as connection:
-        context.configure(connection=connection, target_metadata=target_metadata)
+        context.configure(
+            connection=connection,
+            target_metadata=target_metadata,
+            include_object=include_object,
+            render_as_batch=True,
+        )

        with context.begin_transaction():
            context.run_migrations()
@@ -1,6 +1,5 @@
 """Functions for managing database migrations."""

-import asyncio
 from pathlib import Path
 from loguru import logger
 from alembic.config import Config
@@ -10,20 +9,16 @@ from alembic import command
 def get_alembic_config() -> Config:  # pragma: no cover
    """Get alembic config with correct paths."""
    migrations_path = Path(__file__).parent
-    alembic_ini = migrations_path.parent.parent.parent / "alembic.ini"
+    alembic_ini = migrations_path / "alembic.ini"

    config = Config(alembic_ini)
    config.set_main_option("script_location", str(migrations_path))
    return config


-async def reset_database():  # pragma: no cover
+def reset_database():  # pragma: no cover
    """Drop and recreate all tables."""
    logger.info("Resetting database...")
    config = get_alembic_config()
-
-    def _reset(cfg):
-        command.downgrade(cfg, "base")
-        command.upgrade(cfg, "head")
-
-    await asyncio.get_event_loop().run_in_executor(None, _reset, config)
+    command.downgrade(config, "base")
+    command.upgrade(config, "head")
@@ -0,0 +1,51 @@
+"""remove required from entity.permalink
+
+Revision ID: 502b60eaa905
+Revises: b3c3938bacdb
+Create Date: 2025-02-24 13:33:09.790951
+
+"""
+
+from typing import Sequence, Union
+
+from alembic import op
+import sqlalchemy as sa
+
+
+# revision identifiers, used by Alembic.
+revision: str = "502b60eaa905"
+down_revision: Union[str, None] = "b3c3938bacdb"
+branch_labels: Union[str, Sequence[str], None] = None
+depends_on: Union[str, Sequence[str], None] = None
+
+
+def upgrade() -> None:
+    # ### commands auto generated by Alembic - please adjust! ###
+    with op.batch_alter_table("entity", schema=None) as batch_op:
+        batch_op.alter_column("permalink", existing_type=sa.VARCHAR(), nullable=True)
+        batch_op.drop_index("ix_entity_permalink")
+        batch_op.create_index(batch_op.f("ix_entity_permalink"), ["permalink"], unique=False)
+        batch_op.drop_constraint("uix_entity_permalink", type_="unique")
+        batch_op.create_index(
+            "uix_entity_permalink",
+            ["permalink"],
+            unique=True,
+            sqlite_where=sa.text("content_type = 'text/markdown' AND permalink IS NOT NULL"),
+        )
+
+    # ### end Alembic commands ###
+
+
+def downgrade() -> None:
+    # ### commands auto generated by Alembic - please adjust! ###
+    with op.batch_alter_table("entity", schema=None) as batch_op:
+        batch_op.drop_index(
+            "uix_entity_permalink",
+            sqlite_where=sa.text("content_type = 'text/markdown' AND permalink IS NOT NULL"),
+        )
+        batch_op.create_unique_constraint("uix_entity_permalink", ["permalink"])
+        batch_op.drop_index(batch_op.f("ix_entity_permalink"))
+        batch_op.create_index("ix_entity_permalink", ["permalink"], unique=1)
+        batch_op.alter_column("permalink", existing_type=sa.VARCHAR(), nullable=False)
+
+    # ### end Alembic commands ###
@@ -0,0 +1,108 @@
+"""add projects table
+
+Revision ID: 5fe1ab1ccebe
+Revises: cc7172b46608
+Create Date: 2025-05-14 09:05:18.214357
+
+"""
+
+from typing import Sequence, Union
+
+from alembic import op
+import sqlalchemy as sa
+
+
+# revision identifiers, used by Alembic.
+revision: str = "5fe1ab1ccebe"
+down_revision: Union[str, None] = "cc7172b46608"
+branch_labels: Union[str, Sequence[str], None] = None
+depends_on: Union[str, Sequence[str], None] = None
+
+
+def upgrade() -> None:
+    # ### commands auto generated by Alembic - please adjust! ###
+    op.create_table(
+        "project",
+        sa.Column("id", sa.Integer(), nullable=False),
+        sa.Column("name", sa.String(), nullable=False),
+        sa.Column("description", sa.Text(), nullable=True),
+        sa.Column("permalink", sa.String(), nullable=False),
+        sa.Column("path", sa.String(), nullable=False),
+        sa.Column("is_active", sa.Boolean(), nullable=False),
+        sa.Column("is_default", sa.Boolean(), nullable=True),
+        sa.Column("created_at", sa.DateTime(), nullable=False),
+        sa.Column("updated_at", sa.DateTime(), nullable=False),
+        sa.PrimaryKeyConstraint("id"),
+        sa.UniqueConstraint("is_default"),
+        sa.UniqueConstraint("name"),
+        sa.UniqueConstraint("permalink"),
+        if_not_exists=True,
+    )
+    with op.batch_alter_table("project", schema=None) as batch_op:
+        batch_op.create_index(
+            "ix_project_created_at", ["created_at"], unique=False, if_not_exists=True
+        )
+        batch_op.create_index("ix_project_name", ["name"], unique=True, if_not_exists=True)
+        batch_op.create_index("ix_project_path", ["path"], unique=False, if_not_exists=True)
+        batch_op.create_index(
+            "ix_project_permalink", ["permalink"], unique=True, if_not_exists=True
+        )
+        batch_op.create_index(
+            "ix_project_updated_at", ["updated_at"], unique=False, if_not_exists=True
+        )
+
+    with op.batch_alter_table("entity", schema=None) as batch_op:
+        batch_op.add_column(sa.Column("project_id", sa.Integer(), nullable=False))
+        batch_op.drop_index(
+            "uix_entity_permalink",
+            sqlite_where=sa.text("content_type = 'text/markdown' AND permalink IS NOT NULL"),
+        )
+        batch_op.drop_index("ix_entity_file_path")
+        batch_op.create_index(batch_op.f("ix_entity_file_path"), ["file_path"], unique=False)
+        batch_op.create_index("ix_entity_project_id", ["project_id"], unique=False)
+        batch_op.create_index(
+            "uix_entity_file_path_project", ["file_path", "project_id"], unique=True
+        )
+        batch_op.create_index(
+            "uix_entity_permalink_project",
+            ["permalink", "project_id"],
+            unique=True,
+            sqlite_where=sa.text("content_type = 'text/markdown' AND permalink IS NOT NULL"),
+        )
+        batch_op.create_foreign_key("fk_entity_project_id", "project", ["project_id"], ["id"])
+
+    # drop the search index table. it will be recreated
+    op.drop_table("search_index")
+
+    # ### end Alembic commands ###
+
+
+def downgrade() -> None:
+    # ### commands auto generated by Alembic - please adjust! ###
+    with op.batch_alter_table("entity", schema=None) as batch_op:
+        batch_op.drop_constraint("fk_entity_project_id", type_="foreignkey")
+        batch_op.drop_index(
+            "uix_entity_permalink_project",
+            sqlite_where=sa.text("content_type = 'text/markdown' AND permalink IS NOT NULL"),
+        )
+        batch_op.drop_index("uix_entity_file_path_project")
+        batch_op.drop_index("ix_entity_project_id")
+        batch_op.drop_index(batch_op.f("ix_entity_file_path"))
+        batch_op.create_index("ix_entity_file_path", ["file_path"], unique=1)
+        batch_op.create_index(
+            "uix_entity_permalink",
+            ["permalink"],
+            unique=1,
+            sqlite_where=sa.text("content_type = 'text/markdown' AND permalink IS NOT NULL"),
+        )
+        batch_op.drop_column("project_id")
+
+    with op.batch_alter_table("project", schema=None) as batch_op:
+        batch_op.drop_index("ix_project_updated_at")
+        batch_op.drop_index("ix_project_permalink")
+        batch_op.drop_index("ix_project_path")
+        batch_op.drop_index("ix_project_name")
+        batch_op.drop_index("ix_project_created_at")
+
+    op.drop_table("project")
+    # ### end Alembic commands ###
@@ -0,0 +1,104 @@
+"""project constraint fix
+
+Revision ID: 647e7a75e2cd
+Revises: 5fe1ab1ccebe
+Create Date: 2025-06-03 12:48:30.162566
+
+"""
+
+from typing import Sequence, Union
+
+from alembic import op
+import sqlalchemy as sa
+
+
+# revision identifiers, used by Alembic.
+revision: str = "647e7a75e2cd"
+down_revision: Union[str, None] = "5fe1ab1ccebe"
+branch_labels: Union[str, Sequence[str], None] = None
+depends_on: Union[str, Sequence[str], None] = None
+
+
+def upgrade() -> None:
+    """Remove the problematic UNIQUE constraint on is_default column.
+
+    The UNIQUE constraint prevents multiple projects from having is_default=FALSE,
+    which breaks project creation when the service sets is_default=False.
+
+    Since SQLite doesn't support dropping specific constraints easily, we'll
+    recreate the table without the problematic constraint.
+    """
+    # For SQLite, we need to recreate the table without the UNIQUE constraint
+    # Create a new table without the UNIQUE constraint on is_default
+    op.create_table(
+        "project_new",
+        sa.Column("id", sa.Integer(), nullable=False),
+        sa.Column("name", sa.String(), nullable=False),
+        sa.Column("description", sa.Text(), nullable=True),
+        sa.Column("permalink", sa.String(), nullable=False),
+        sa.Column("path", sa.String(), nullable=False),
+        sa.Column("is_active", sa.Boolean(), nullable=False),
+        sa.Column("is_default", sa.Boolean(), nullable=True),  # No UNIQUE constraint!
+        sa.Column("created_at", sa.DateTime(), nullable=False),
+        sa.Column("updated_at", sa.DateTime(), nullable=False),
+        sa.PrimaryKeyConstraint("id"),
+        sa.UniqueConstraint("name"),
+        sa.UniqueConstraint("permalink"),
+    )
+
+    # Copy data from old table to new table
+    op.execute("INSERT INTO project_new SELECT * FROM project")
+
+    # Drop the old table
+    op.drop_table("project")
+
+    # Rename the new table
+    op.rename_table("project_new", "project")
+
+    # Recreate the indexes
+    with op.batch_alter_table("project", schema=None) as batch_op:
+        batch_op.create_index("ix_project_created_at", ["created_at"], unique=False)
+        batch_op.create_index("ix_project_name", ["name"], unique=True)
+        batch_op.create_index("ix_project_path", ["path"], unique=False)
+        batch_op.create_index("ix_project_permalink", ["permalink"], unique=True)
+        batch_op.create_index("ix_project_updated_at", ["updated_at"], unique=False)
+
+
+def downgrade() -> None:
+    """Add back the UNIQUE constraint on is_default column.
+
+    WARNING: This will break project creation again if multiple projects
+    have is_default=FALSE.
+    """
+    # Recreate the table with the UNIQUE constraint
+    op.create_table(
+        "project_old",
+        sa.Column("id", sa.Integer(), nullable=False),
+        sa.Column("name", sa.String(), nullable=False),
+        sa.Column("description", sa.Text(), nullable=True),
+        sa.Column("permalink", sa.String(), nullable=False),
+        sa.Column("path", sa.String(), nullable=False),
+        sa.Column("is_active", sa.Boolean(), nullable=False),
+        sa.Column("is_default", sa.Boolean(), nullable=True),
+        sa.Column("created_at", sa.DateTime(), nullable=False),
+        sa.Column("updated_at", sa.DateTime(), nullable=False),
+        sa.PrimaryKeyConstraint("id"),
+        sa.UniqueConstraint("is_default"),  # Add back the problematic constraint
+        sa.UniqueConstraint("name"),
+        sa.UniqueConstraint("permalink"),
+    )
+
+    # Copy data (this may fail if multiple FALSE values exist)
+    op.execute("INSERT INTO project_old SELECT * FROM project")
+
+    # Drop the current table and rename
+    op.drop_table("project")
+    op.rename_table("project_old", "project")
+
+    # Recreate indexes
+    with op.batch_alter_table("project", schema=None) as batch_op:
+        batch_op.create_index("ix_project_created_at", ["created_at"], unique=False)
+        batch_op.create_index("ix_project_name", ["name"], unique=True)
+        batch_op.create_index("ix_project_path", ["path"], unique=False)
+        batch_op.create_index("ix_project_permalink", ["permalink"], unique=True)
+        batch_op.create_index("ix_project_updated_at", ["updated_at"], unique=False)
@@ -0,0 +1,53 @@
+"""fix project foreign keys
+
+Revision ID: a1b2c3d4e5f6
+Revises: 647e7a75e2cd
+Create Date: 2025-08-19 22:06:00.000000
+
+"""
+
+from typing import Sequence, Union
+
+from alembic import op
+
+
+# revision identifiers, used by Alembic.
+revision: str = "a1b2c3d4e5f6"
+down_revision: Union[str, None] = "647e7a75e2cd"
+branch_labels: Union[str, Sequence[str], None] = None
+depends_on: Union[str, Sequence[str], None] = None
+
+
+def upgrade() -> None:
+    """Re-establish foreign key constraints that were lost during project table recreation.
+    
+    The migration 647e7a75e2cd recreated the project table but did not re-establish
+    the foreign key constraint from entity.project_id to project.id, causing
+    foreign key constraint failures when trying to delete projects with related entities.
+    """
+    # SQLite doesn't allow adding foreign key constraints to existing tables easily
+    # We need to be careful and handle the case where the constraint might already exist
+    
+    with op.batch_alter_table("entity", schema=None) as batch_op:
+        # Try to drop existing foreign key constraint (may not exist)
+        try:
+            batch_op.drop_constraint("fk_entity_project_id", type_="foreignkey")
+        except Exception:
+            # Constraint may not exist, which is fine - we'll create it next
+            pass
+        
+        # Add the foreign key constraint with CASCADE DELETE
+        # This ensures that when a project is deleted, all related entities are also deleted
+        batch_op.create_foreign_key(
+            "fk_entity_project_id", 
+            "project", 
+            ["project_id"], 
+            ["id"],
+            ondelete="CASCADE"
+        )
+
+
+def downgrade() -> None:
+    """Remove the foreign key constraint."""
+    with op.batch_alter_table("entity", schema=None) as batch_op:
+        batch_op.drop_constraint("fk_entity_project_id", type_="foreignkey")
@@ -0,0 +1,44 @@
+"""relation to_name unique index
+
+Revision ID: b3c3938bacdb
+Revises: 3dae7c7b1564
+Create Date: 2025-02-22 14:59:30.668466
+
+"""
+
+from typing import Sequence, Union
+
+from alembic import op
+
+
+# revision identifiers, used by Alembic.
+revision: str = "b3c3938bacdb"
+down_revision: Union[str, None] = "3dae7c7b1564"
+branch_labels: Union[str, Sequence[str], None] = None
+depends_on: Union[str, Sequence[str], None] = None
+
+
+def upgrade() -> None:
+    # SQLite doesn't support constraint changes through ALTER
+    # Need to recreate table with desired constraints
+    with op.batch_alter_table("relation") as batch_op:
+        # Drop existing unique constraint
+        batch_op.drop_constraint("uix_relation", type_="unique")
+
+        # Add new constraints
+        batch_op.create_unique_constraint(
+            "uix_relation_from_id_to_id", ["from_id", "to_id", "relation_type"]
+        )
+        batch_op.create_unique_constraint(
+            "uix_relation_from_id_to_name", ["from_id", "to_name", "relation_type"]
+        )
+
+
+def downgrade() -> None:
+    with op.batch_alter_table("relation") as batch_op:
+        # Drop new constraints
+        batch_op.drop_constraint("uix_relation_from_id_to_name", type_="unique")
+        batch_op.drop_constraint("uix_relation_from_id_to_id", type_="unique")
+
+        # Restore original constraint
+        batch_op.create_unique_constraint("uix_relation", ["from_id", "to_id", "relation_type"])
@@ -0,0 +1,100 @@
+"""Update search index schema
+
+Revision ID: cc7172b46608
+Revises: 502b60eaa905
+Create Date: 2025-02-28 18:48:23.244941
+
+"""
+
+from typing import Sequence, Union
+
+from alembic import op
+
+
+# revision identifiers, used by Alembic.
+revision: str = "cc7172b46608"
+down_revision: Union[str, None] = "502b60eaa905"
+branch_labels: Union[str, Sequence[str], None] = None
+depends_on: Union[str, Sequence[str], None] = None
+
+
+def upgrade() -> None:
+    """Upgrade database schema to use new search index with content_stems and content_snippet."""
+
+    # First, drop the existing search_index table
+    op.execute("DROP TABLE IF EXISTS search_index")
+
+    # Create new search_index with updated schema
+    op.execute("""
+    CREATE VIRTUAL TABLE IF NOT EXISTS search_index USING fts5(
+        -- Core entity fields
+        id UNINDEXED,          -- Row ID
+        title,                 -- Title for searching
+        content_stems,         -- Main searchable content split into stems
+        content_snippet,       -- File content snippet for display
+        permalink,             -- Stable identifier (now indexed for path search)
+        file_path UNINDEXED,   -- Physical location
+        type UNINDEXED,        -- entity/relation/observation
+        
+        -- Relation fields 
+        from_id UNINDEXED,     -- Source entity
+        to_id UNINDEXED,       -- Target entity
+        relation_type UNINDEXED, -- Type of relation
+        
+        -- Observation fields
+        entity_id UNINDEXED,   -- Parent entity
+        category UNINDEXED,    -- Observation category
+        
+        -- Common fields
+        metadata UNINDEXED,    -- JSON metadata
+        created_at UNINDEXED,  -- Creation timestamp
+        updated_at UNINDEXED,  -- Last update
+        
+        -- Configuration
+        tokenize='unicode61 tokenchars 0x2F',  -- Hex code for /
+        prefix='1,2,3,4'                    -- Support longer prefixes for paths
+    );
+    """)
+
+
+def downgrade() -> None:
+    """Downgrade database schema to use old search index."""
+    # Drop the updated search_index table
+    op.execute("DROP TABLE IF EXISTS search_index")
+
+    # Recreate the original search_index schema
+    op.execute("""
+    CREATE VIRTUAL TABLE IF NOT EXISTS search_index USING fts5(
+        -- Core entity fields
+        id UNINDEXED,          -- Row ID
+        title,                 -- Title for searching
+        content,               -- Main searchable content
+        permalink,             -- Stable identifier (now indexed for path search)
+        file_path UNINDEXED,   -- Physical location
+        type UNINDEXED,        -- entity/relation/observation
+        
+        -- Relation fields 
+        from_id UNINDEXED,     -- Source entity
+        to_id UNINDEXED,       -- Target entity
+        relation_type UNINDEXED, -- Type of relation
+        
+        -- Observation fields
+        entity_id UNINDEXED,   -- Parent entity
+        category UNINDEXED,    -- Observation category
+        
+        -- Common fields
+        metadata UNINDEXED,    -- JSON metadata
+        created_at UNINDEXED,  -- Creation timestamp
+        updated_at UNINDEXED,  -- Last update
+        
+        -- Configuration
+        tokenize='unicode61 tokenchars 0x2F',  -- Hex code for /
+        prefix='1,2,3,4'                    -- Support longer prefixes for paths
+    );
+    """)
+
+    # Print instruction to manually reindex after migration
+    print("\n------------------------------------------------------------------")
+    print("IMPORTANT: After downgrade completes, manually run the reindex command:")
+    print("basic-memory sync")
+    print("------------------------------------------------------------------\n")
@@ -1,45 +1,54 @@
 """FastAPI application for basic-memory knowledge graph API."""

+import asyncio
 from contextlib import asynccontextmanager

 from fastapi import FastAPI, HTTPException
 from fastapi.exception_handlers import http_exception_handler
 from loguru import logger

+from basic_memory import __version__ as version
 from basic_memory import db
-from basic_memory.config import config as app_config
-from basic_memory.api.routers import knowledge, search, memory, resource
-from alembic import command
-from alembic.config import Config
-
-from basic_memory.db import DatabaseType
-from basic_memory.repository.search_repository import SearchRepository
-
-
-async def run_migrations():  # pragma: no cover
-    """Run any pending alembic migrations."""
-    logger.info("Running database migrations...")
-    try:
-        config = Config("alembic.ini")
-        command.upgrade(config, "head")
-        logger.info("Migrations completed successfully")
-
-        _, session_maker = await db.get_or_create_db(
-            app_config.database_path, DatabaseType.FILESYSTEM
-        )
-        await SearchRepository(session_maker).init_search_index()
-    except Exception as e:
-        logger.error(f"Error running migrations: {e}")
-        raise
+from basic_memory.api.routers import (
+    directory_router,
+    importer_router,
+    knowledge,
+    management,
+    memory,
+    project,
+    resource,
+    search,
+    prompt_router,
+)
+from basic_memory.config import ConfigManager
+from basic_memory.services.initialization import initialize_app, initialize_file_sync


@asynccontextmanager
 async def lifespan(app: FastAPI):  # pragma: no cover
    """Lifecycle manager for the FastAPI app."""
+
+    app_config = ConfigManager().config
+    # Initialize app and database
    logger.info("Starting Basic Memory API")
-    await run_migrations()
+    print(f"fastapi {app_config.projects}")
+    await initialize_app(app_config)
+
+    logger.info(f"Sync changes enabled: {app_config.sync_changes}")
+    if app_config.sync_changes:
+        # start file sync task in background
+        app.state.sync_task = asyncio.create_task(initialize_file_sync(app_config))
+    else:
+        logger.info("Sync changes disabled. Skipping file sync service.")
+
+    # proceed with startup
    yield
+
    logger.info("Shutting down Basic Memory API")
+    if app.state.sync_task:
+        logger.info("Stopping sync...")
+        app.state.sync_task.cancel()  # pyright: ignore
+
    await db.shutdown_db()


@@ -47,20 +56,37 @@ async def lifespan(app: FastAPI):  # pragma: no cover
 app = FastAPI(
    title="Basic Memory API",
    description="Knowledge graph API for basic-memory",
-    version="0.1.0",
+    version=version,
    lifespan=lifespan,
 )

+
 # Include routers
-app.include_router(knowledge.router)
-app.include_router(search.router)
-app.include_router(memory.router)
-app.include_router(resource.router)
+app.include_router(knowledge.router, prefix="/{project}")
+app.include_router(memory.router, prefix="/{project}")
+app.include_router(resource.router, prefix="/{project}")
+app.include_router(search.router, prefix="/{project}")
+app.include_router(project.project_router, prefix="/{project}")
+app.include_router(directory_router.router, prefix="/{project}")
+app.include_router(prompt_router.router, prefix="/{project}")
+app.include_router(importer_router.router, prefix="/{project}")
+
+# Project resource router works accross projects
+app.include_router(project.project_resource_router)
+app.include_router(management.router)
+
+# Auth routes are handled by FastMCP automatically when auth is enabled


@app.exception_handler(Exception)
 async def exception_handler(request, exc):  # pragma: no cover
    logger.exception(
-        f"An unhandled exception occurred for request '{request.url}', exception: {exc}"
+        "API unhandled exception",
+        url=str(request.url),
+        method=request.method,
+        client=request.client.host if request.client else None,
+        path=request.url.path,
+        error_type=type(exc).__name__,
+        error=str(exc),
    )
    return await http_exception_handler(request, HTTPException(status_code=500, detail=str(exc)))
@@ -1,8 +1,11 @@
 """API routers."""

 from . import knowledge_router as knowledge
+from . import management_router as management
 from . import memory_router as memory
+from . import project_router as project
 from . import resource_router as resource
 from . import search_router as search
+from . import prompt_router as prompt

-__all__ = ["knowledge", "memory", "resource", "search"]
+__all__ = ["knowledge", "management", "memory", "project", "resource", "search", "prompt"]
@@ -0,0 +1,63 @@
+"""Router for directory tree operations."""
+
+from typing import List, Optional
+
+from fastapi import APIRouter, Query
+
+from basic_memory.deps import DirectoryServiceDep, ProjectIdDep
+from basic_memory.schemas.directory import DirectoryNode
+
+router = APIRouter(prefix="/directory", tags=["directory"])
+
+
+@router.get("/tree", response_model=DirectoryNode)
+async def get_directory_tree(
+    directory_service: DirectoryServiceDep,
+    project_id: ProjectIdDep,
+):
+    """Get hierarchical directory structure from the knowledge base.
+
+    Args:
+        directory_service: Service for directory operations
+        project_id: ID of the current project
+
+    Returns:
+        DirectoryNode representing the root of the hierarchical tree structure
+    """
+    # Get a hierarchical directory tree for the specific project
+    tree = await directory_service.get_directory_tree()
+
+    # Return the hierarchical tree
+    return tree
+
+
+@router.get("/list", response_model=List[DirectoryNode])
+async def list_directory(
+    directory_service: DirectoryServiceDep,
+    project_id: ProjectIdDep,
+    dir_name: str = Query("/", description="Directory path to list"),
+    depth: int = Query(1, ge=1, le=10, description="Recursion depth (1-10)"),
+    file_name_glob: Optional[str] = Query(
+        None, description="Glob pattern for filtering file names"
+    ),
+):
+    """List directory contents with filtering and depth control.
+
+    Args:
+        directory_service: Service for directory operations
+        project_id: ID of the current project
+        dir_name: Directory path to list (default: root "/")
+        depth: Recursion depth (1-10, default: 1 for immediate children only)
+        file_name_glob: Optional glob pattern for filtering file names (e.g., "*.md", "*meeting*")
+
+    Returns:
+        List of DirectoryNode objects matching the criteria
+    """
+    # Get directory listing with filtering
+    nodes = await directory_service.list_directory(
+        dir_name=dir_name,
+        depth=depth,
+        file_name_glob=file_name_glob,
+    )
+
+    return nodes
@@ -0,0 +1,152 @@
+"""Import router for Basic Memory API."""
+
+import json
+import logging
+
+from fastapi import APIRouter, Form, HTTPException, UploadFile, status
+
+from basic_memory.deps import (
+    ChatGPTImporterDep,
+    ClaudeConversationsImporterDep,
+    ClaudeProjectsImporterDep,
+    MemoryJsonImporterDep,
+)
+from basic_memory.importers import Importer
+from basic_memory.schemas.importer import (
+    ChatImportResult,
+    EntityImportResult,
+    ProjectImportResult,
+)
+
+logger = logging.getLogger(__name__)
+
+router = APIRouter(prefix="/import", tags=["import"])
+
+
+@router.post("/chatgpt", response_model=ChatImportResult)
+async def import_chatgpt(
+    importer: ChatGPTImporterDep,
+    file: UploadFile,
+    folder: str = Form("conversations"),
+) -> ChatImportResult:
+    """Import conversations from ChatGPT JSON export.
+
+    Args:
+        file: The ChatGPT conversations.json file.
+        folder: The folder to place the files in.
+        markdown_processor: MarkdownProcessor instance.
+
+    Returns:
+        ChatImportResult with import statistics.
+
+    Raises:
+        HTTPException: If import fails.
+    """
+    return await import_file(importer, file, folder)
+
+
+@router.post("/claude/conversations", response_model=ChatImportResult)
+async def import_claude_conversations(
+    importer: ClaudeConversationsImporterDep,
+    file: UploadFile,
+    folder: str = Form("conversations"),
+) -> ChatImportResult:
+    """Import conversations from Claude conversations.json export.
+
+    Args:
+        file: The Claude conversations.json file.
+        folder: The folder to place the files in.
+        markdown_processor: MarkdownProcessor instance.
+
+    Returns:
+        ChatImportResult with import statistics.
+
+    Raises:
+        HTTPException: If import fails.
+    """
+    return await import_file(importer, file, folder)
+
+
+@router.post("/claude/projects", response_model=ProjectImportResult)
+async def import_claude_projects(
+    importer: ClaudeProjectsImporterDep,
+    file: UploadFile,
+    folder: str = Form("projects"),
+) -> ProjectImportResult:
+    """Import projects from Claude projects.json export.
+
+    Args:
+        file: The Claude projects.json file.
+        base_folder: The base folder to place the files in.
+        markdown_processor: MarkdownProcessor instance.
+
+    Returns:
+        ProjectImportResult with import statistics.
+
+    Raises:
+        HTTPException: If import fails.
+    """
+    return await import_file(importer, file, folder)
+
+
+@router.post("/memory-json", response_model=EntityImportResult)
+async def import_memory_json(
+    importer: MemoryJsonImporterDep,
+    file: UploadFile,
+    folder: str = Form("conversations"),
+) -> EntityImportResult:
+    """Import entities and relations from a memory.json file.
+
+    Args:
+        file: The memory.json file.
+        destination_folder: Optional destination folder within the project.
+        markdown_processor: MarkdownProcessor instance.
+
+    Returns:
+        EntityImportResult with import statistics.
+
+    Raises:
+        HTTPException: If import fails.
+    """
+    try:
+        file_data = []
+        file_bytes = await file.read()
+        file_str = file_bytes.decode("utf-8")
+        for line in file_str.splitlines():
+            json_data = json.loads(line)
+            file_data.append(json_data)
+
+        result = await importer.import_data(file_data, folder)
+        if not result.success:  # pragma: no cover
+            raise HTTPException(
+                status_code=status.HTTP_500_INTERNAL_SERVER_ERROR,
+                detail=result.error_message or "Import failed",
+            )
+    except Exception as e:
+        logger.exception("Import failed")
+        raise HTTPException(
+            status_code=status.HTTP_500_INTERNAL_SERVER_ERROR,
+            detail=f"Import failed: {str(e)}",
+        )
+    return result
+
+
+async def import_file(importer: Importer, file: UploadFile, destination_folder: str):
+    try:
+        # Process file
+        json_data = json.load(file.file)
+        result = await importer.import_data(json_data, destination_folder)
+        if not result.success:  # pragma: no cover
+            raise HTTPException(
+                status_code=status.HTTP_500_INTERNAL_SERVER_ERROR,
+                detail=result.error_message or "Import failed",
+            )
+
+        return result
+
+    except Exception as e:
+        logger.exception("Import failed")
+        raise HTTPException(
+            status_code=status.HTTP_500_INTERNAL_SERVER_ERROR,
+            detail=f"Import failed: {str(e)}",
+        )
@@ -10,6 +10,11 @@ from basic_memory.deps import (
    get_search_service,
    SearchServiceDep,
    LinkResolverDep,
+    ProjectPathDep,
+    FileServiceDep,
+    ProjectConfigDep,
+    AppConfigDep,
+    SyncServiceDep,
 )
 from basic_memory.schemas import (
    EntityListResponse,
@@ -17,8 +22,8 @@ from basic_memory.schemas import (
    DeleteEntitiesResponse,
    DeleteEntitiesRequest,
 )
+from basic_memory.schemas.request import EditEntityRequest, MoveEntityRequest
 from basic_memory.schemas.base import Permalink, Entity
-from basic_memory.services.exceptions import EntityNotFoundError

 router = APIRouter(prefix="/knowledge", tags=["knowledge"])

@@ -33,7 +38,9 @@ async def create_entity(
    search_service: SearchServiceDep,
 ) -> EntityResponse:
    """Create an entity."""
-    logger.info(f"request: create_entity with data={data}")
+    logger.info(
+        "API request", endpoint="create_entity", entity_type=data.entity_type, title=data.title
+    )

    entity = await entity_service.create_entity(data)

@@ -41,25 +48,38 @@ async def create_entity(
    await search_service.index_entity(entity, background_tasks=background_tasks)
    result = EntityResponse.model_validate(entity)

-    logger.info(f"response: create_entity with result={result}")
+    logger.info(
+        f"API response: endpoint='create_entity' title={result.title}, permalink={result.permalink}, status_code=201"
+    )
    return result


@router.put("/entities/{permalink:path}", response_model=EntityResponse)
 async def create_or_update_entity(
+    project: ProjectPathDep,
    permalink: Permalink,
    data: Entity,
    response: Response,
    background_tasks: BackgroundTasks,
    entity_service: EntityServiceDep,
    search_service: SearchServiceDep,
+    file_service: FileServiceDep,
+    sync_service: SyncServiceDep,
 ) -> EntityResponse:
    """Create or update an entity. If entity exists, it will be updated, otherwise created."""
-    logger.info(f"request: create_or_update_entity with permalink={permalink}, data={data}")
+    logger.info(
+        f"API request: create_or_update_entity for {project=}, {permalink=}, {data.entity_type=}, {data.title=}"
+    )

    # Validate permalink matches
    if data.permalink != permalink:
-        raise HTTPException(status_code=400, detail="Entity permalink must match URL path")
+        logger.warning(
+            f"API validation error: creating/updating entity with permalink mismatch - url={permalink}, data={data.permalink}",
+        )
+        raise HTTPException(
+            status_code=400,
+            detail=f"Entity permalink {data.permalink} must match URL path: '{permalink}'",
+        )

    # Try create_or_update operation
    entity, created = await entity_service.create_or_update_entity(data)
@@ -67,39 +87,144 @@ async def create_or_update_entity(

    # reindex
    await search_service.index_entity(entity, background_tasks=background_tasks)
+
+    # Attempt immediate relation resolution when creating new entities
+    # This helps resolve forward references when related entities are created in the same session
+    if created:
+        try:
+            await sync_service.resolve_relations()
+            logger.debug(f"Resolved relations after creating entity: {entity.permalink}")
+        except Exception as e:  # pragma: no cover
+            # Don't fail the entire request if relation resolution fails
+            logger.warning(f"Failed to resolve relations after entity creation: {e}")
+
    result = EntityResponse.model_validate(entity)

    logger.info(
-        f"response: create_or_update_entity with result={result}, status_code={response.status_code}"
+        f"API response: {result.title=}, {result.permalink=}, {created=}, status_code={response.status_code}"
    )
    return result


+@router.patch("/entities/{identifier:path}", response_model=EntityResponse)
+async def edit_entity(
+    identifier: str,
+    data: EditEntityRequest,
+    background_tasks: BackgroundTasks,
+    entity_service: EntityServiceDep,
+    search_service: SearchServiceDep,
+) -> EntityResponse:
+    """Edit an existing entity using various operations like append, prepend, find_replace, or replace_section.
+
+    This endpoint allows for targeted edits without requiring the full entity content.
+    """
+    logger.info(
+        f"API request: endpoint='edit_entity', identifier='{identifier}', operation='{data.operation}'"
+    )
+
+    try:
+        # Edit the entity using the service
+        entity = await entity_service.edit_entity(
+            identifier=identifier,
+            operation=data.operation,
+            content=data.content,
+            section=data.section,
+            find_text=data.find_text,
+            expected_replacements=data.expected_replacements,
+        )
+
+        # Reindex the updated entity
+        await search_service.index_entity(entity, background_tasks=background_tasks)
+
+        # Return the updated entity response
+        result = EntityResponse.model_validate(entity)
+
+        logger.info(
+            "API response",
+            endpoint="edit_entity",
+            identifier=identifier,
+            operation=data.operation,
+            permalink=result.permalink,
+            status_code=200,
+        )
+
+        return result
+
+    except Exception as e:
+        logger.error(f"Error editing entity: {e}")
+        raise HTTPException(status_code=400, detail=str(e))
+
+
+@router.post("/move")
+async def move_entity(
+    data: MoveEntityRequest,
+    background_tasks: BackgroundTasks,
+    entity_service: EntityServiceDep,
+    project_config: ProjectConfigDep,
+    app_config: AppConfigDep,
+    search_service: SearchServiceDep,
+) -> EntityResponse:
+    """Move an entity to a new file location with project consistency.
+
+    This endpoint moves a note to a different path while maintaining project
+    consistency and optionally updating permalinks based on configuration.
+    """
+    logger.info(
+        f"API request: endpoint='move_entity', identifier='{data.identifier}', destination='{data.destination_path}'"
+    )
+
+    try:
+        # Move the entity using the service
+        moved_entity = await entity_service.move_entity(
+            identifier=data.identifier,
+            destination_path=data.destination_path,
+            project_config=project_config,
+            app_config=app_config,
+        )
+
+        # Get the moved entity to reindex it
+        entity = await entity_service.link_resolver.resolve_link(data.destination_path)
+        if entity:
+            await search_service.index_entity(entity, background_tasks=background_tasks)
+
+        logger.info(
+            "API response",
+            endpoint="move_entity",
+            identifier=data.identifier,
+            destination=data.destination_path,
+            status_code=200,
+        )
+        result = EntityResponse.model_validate(moved_entity)
+        return result
+
+    except Exception as e:
+        logger.error(f"Error moving entity: {e}")
+        raise HTTPException(status_code=400, detail=str(e))
+
+
 ## Read endpoints


-@router.get("/entities/{permalink:path}", response_model=EntityResponse)
+@router.get("/entities/{identifier:path}", response_model=EntityResponse)
 async def get_entity(
    entity_service: EntityServiceDep,
-    permalink: str,
+    link_resolver: LinkResolverDep,
+    identifier: str,
 ) -> EntityResponse:
-    """Get a specific entity by ID.
+    """Get a specific entity by file path or permalink..

    Args:
-        permalink: Entity path ID
-        content: If True, include full file content
+        identifier: Entity file path or permalink
        :param entity_service: EntityService
+        :param link_resolver: LinkResolver
    """
-    logger.info(f"request: get_entity with permalink={permalink}")
-    try:
-        entity = await entity_service.get_by_permalink(permalink)
-        result = EntityResponse.model_validate(entity)
+    logger.info(f"request: get_entity with identifier={identifier}")
+    entity = await link_resolver.resolve_link(identifier)
+    if not entity:
+        raise HTTPException(status_code=404, detail=f"Entity {identifier} not found")

-        logger.info(f"response: get_entity with result={result}")
-        return result
-    except EntityNotFoundError:
-        logger.error(f"Error: Entity with {permalink} not found")
-        raise HTTPException(status_code=404, detail=f"Entity with {permalink} not found")
+    result = EntityResponse.model_validate(entity)
+    return result


@router.get("/entities", response_model=EntityListResponse)
@@ -114,8 +239,6 @@ async def get_entities(
    result = EntityListResponse(
        entities=[EntityResponse.model_validate(entity) for entity in entities]
    )
-
-    logger.info(f"response: get_entities with result={result}")
    return result


@@ -135,17 +258,15 @@ async def delete_entity(

    entity = await link_resolver.resolve_link(identifier)
    if entity is None:
-        logger.info("response: delete_entity with result=DeleteEntitiesResponse(deleted=False)")
        return DeleteEntitiesResponse(deleted=False)

    # Delete the entity
-    deleted = await entity_service.delete_entity(entity.permalink)
+    deleted = await entity_service.delete_entity(entity.permalink or entity.id)

-    # Remove from search index
-    background_tasks.add_task(search_service.delete_by_permalink, entity.permalink)
+    # Remove from search index (entity, observations, and relations)
+    background_tasks.add_task(search_service.handle_delete, entity)

    result = DeleteEntitiesResponse(deleted=deleted)
-    logger.info(f"response: delete_entity with result={result}")
    return result


@@ -166,5 +287,4 @@ async def delete_entities(
        background_tasks.add_task(search_service.delete_by_permalink, permalink)

    result = DeleteEntitiesResponse(deleted=deleted)
-    logger.info(f"response: delete_entities with result={result}")
    return result
@@ -0,0 +1,80 @@
+"""Management router for basic-memory API."""
+
+import asyncio
+
+from fastapi import APIRouter, Request
+from loguru import logger
+from pydantic import BaseModel
+
+from basic_memory.config import ConfigManager
+from basic_memory.deps import SyncServiceDep, ProjectRepositoryDep
+
+router = APIRouter(prefix="/management", tags=["management"])
+
+
+class WatchStatusResponse(BaseModel):
+    """Response model for watch status."""
+
+    running: bool
+    """Whether the watch service is currently running."""
+
+
+@router.get("/watch/status", response_model=WatchStatusResponse)
+async def get_watch_status(request: Request) -> WatchStatusResponse:
+    """Get the current status of the watch service."""
+    return WatchStatusResponse(
+        running=request.app.state.watch_task is not None and not request.app.state.watch_task.done()
+    )
+
+
+@router.post("/watch/start", response_model=WatchStatusResponse)
+async def start_watch_service(
+    request: Request, project_repository: ProjectRepositoryDep, sync_service: SyncServiceDep
+) -> WatchStatusResponse:
+    """Start the watch service if it's not already running."""
+
+    # needed because of circular imports from sync -> app
+    from basic_memory.sync import WatchService
+    from basic_memory.sync.background_sync import create_background_sync_task
+
+    if request.app.state.watch_task is not None and not request.app.state.watch_task.done():
+        # Watch service is already running
+        return WatchStatusResponse(running=True)
+
+    app_config = ConfigManager().config
+
+    # Create and start a new watch service
+    logger.info("Starting watch service via management API")
+
+    # Get services needed for the watch task
+    watch_service = WatchService(
+        app_config=app_config,
+        project_repository=project_repository,
+    )
+
+    # Create and store the task
+    watch_task = create_background_sync_task(sync_service, watch_service)
+    request.app.state.watch_task = watch_task
+
+    return WatchStatusResponse(running=True)
+
+
+@router.post("/watch/stop", response_model=WatchStatusResponse)
+async def stop_watch_service(request: Request) -> WatchStatusResponse:  # pragma: no cover
+    """Stop the watch service if it's running."""
+    if request.app.state.watch_task is None or request.app.state.watch_task.done():
+        # Watch service is not running
+        return WatchStatusResponse(running=False)
+
+    # Cancel the running task
+    logger.info("Stopping watch service via management API")
+    request.app.state.watch_task.cancel()
+
+    # Wait for it to be properly cancelled
+    try:
+        await request.app.state.watch_task
+    except asyncio.CancelledError:
+        pass
+
+    request.app.state.watch_task = None
+    return WatchStatusResponse(running=False)
@@ -1,75 +1,22 @@
 """Routes for memory:// URI operations."""

-from typing import Annotated
+from typing import Annotated, Optional

-from dateparser import parse
 from fastapi import APIRouter, Query
 from loguru import logger

 from basic_memory.deps import ContextServiceDep, EntityRepositoryDep
-from basic_memory.repository import EntityRepository
-from basic_memory.repository.search_repository import SearchIndexRow
-from basic_memory.schemas.base import TimeFrame
+from basic_memory.schemas.base import TimeFrame, parse_timeframe
 from basic_memory.schemas.memory import (
    GraphContext,
-    RelationSummary,
-    EntitySummary,
-    ObservationSummary,
-    MemoryMetadata,
    normalize_memory_url,
 )
 from basic_memory.schemas.search import SearchItemType
-from basic_memory.services.context_service import ContextResultRow
+from basic_memory.api.routers.utils import to_graph_context

 router = APIRouter(prefix="/memory", tags=["memory"])


-async def to_graph_context(context, entity_repository: EntityRepository):
-    # return results
-    async def to_summary(item: SearchIndexRow | ContextResultRow):
-        match item.type:
-            case SearchItemType.ENTITY:
-                assert item.title is not None
-                assert item.created_at is not None
-
-                return EntitySummary(
-                    title=item.title,
-                    permalink=item.permalink,
-                    file_path=item.file_path,
-                    created_at=item.created_at,
-                )
-            case SearchItemType.OBSERVATION:
-                assert item.category is not None
-                assert item.content is not None
-
-                return ObservationSummary(
-                    category=item.category, content=item.content, permalink=item.permalink
-                )
-            case SearchItemType.RELATION:
-                assert item.from_id is not None
-                from_entity = await entity_repository.find_by_id(item.from_id)
-                assert from_entity is not None
-
-                to_entity = await entity_repository.find_by_id(item.to_id) if item.to_id else None
-
-                return RelationSummary(
-                    permalink=item.permalink,
-                    relation_type=item.type,
-                    from_id=from_entity.permalink,
-                    to_id=to_entity.permalink if to_entity else None,
-                )
-            case _:  # pragma: no cover
-                raise ValueError(f"Unexpected type: {item.type}")
-
-    primary_results = [await to_summary(r) for r in context["primary_results"]]
-    related_results = [await to_summary(r) for r in context["related_results"]]
-    metadata = MemoryMetadata.model_validate(context["metadata"])
-    # Transform to GraphContext
-    return GraphContext(
-        primary_results=primary_results, related_results=related_results, metadata=metadata
-    )
-
-
@router.get("/recent", response_model=GraphContext)
 async def recent(
    context_service: ContextServiceDep,
@@ -77,7 +24,9 @@ async def recent(
    type: Annotated[list[SearchItemType] | None, Query()] = None,
    depth: int = 1,
    timeframe: TimeFrame = "7d",
-    max_results: int = 10,
+    page: int = 1,
+    page_size: int = 10,
+    max_related: int = 10,
 ) -> GraphContext:
    # return all types by default
    types = (
@@ -87,16 +36,22 @@ async def recent(
    )

    logger.debug(
-        f"Getting recent context: `{types}` depth: `{depth}` timeframe: `{timeframe}` max_results: `{max_results}`"
+        f"Getting recent context: `{types}` depth: `{depth}` timeframe: `{timeframe}` page: `{page}` page_size: `{page_size}` max_related: `{max_related}`"
    )
    # Parse timeframe
-    since = parse(timeframe)
+    since = parse_timeframe(timeframe)
+    limit = page_size
+    offset = (page - 1) * page_size

    # Build context
    context = await context_service.build_context(
-        types=types, depth=depth, since=since, max_results=max_results
+        types=types, depth=depth, since=since, limit=limit, offset=offset, max_related=max_related
    )
-    return await to_graph_context(context, entity_repository=entity_repository)
+    recent_context = await to_graph_context(
+        context, entity_repository=entity_repository, page=page, page_size=page_size
+    )
+    logger.debug(f"Recent context: {recent_context.model_dump_json()}")
+    return recent_context


 # get_memory_context needs to be declared last so other paths can match
@@ -108,22 +63,28 @@ async def get_memory_context(
    entity_repository: EntityRepositoryDep,
    uri: str,
    depth: int = 1,
-    timeframe: TimeFrame = "7d",
-    max_results: int = 10,
+    timeframe: Optional[TimeFrame] = None,
+    page: int = 1,
+    page_size: int = 10,
+    max_related: int = 10,
 ) -> GraphContext:
    """Get rich context from memory:// URI."""
    # add the project name from the config to the url as the "host
    # Parse URI
    logger.debug(
-        f"Getting context for URI: `{uri}` depth: `{depth}` timeframe: `{timeframe}` max_results: `{max_results}`"
+        f"Getting context for URI: `{uri}` depth: `{depth}` timeframe: `{timeframe}` page: `{page}` page_size: `{page_size}` max_related: `{max_related}`"
    )
    memory_url = normalize_memory_url(uri)

    # Parse timeframe
-    since = parse(timeframe)
+    since = parse_timeframe(timeframe) if timeframe else None
+    limit = page_size
+    offset = (page - 1) * page_size

    # Build context
    context = await context_service.build_context(
-        memory_url, depth=depth, since=since, max_results=max_results
+        memory_url, depth=depth, since=since, limit=limit, offset=offset, max_related=max_related
+    )
+    return await to_graph_context(
+        context, entity_repository=entity_repository, page=page, page_size=page_size
    )
-    return await to_graph_context(context, entity_repository=entity_repository)
@@ -0,0 +1,242 @@
+"""Router for project management."""
+
+import os
+from fastapi import APIRouter, HTTPException, Path, Body
+from typing import Optional
+
+from basic_memory.deps import ProjectServiceDep, ProjectPathDep
+from basic_memory.schemas import ProjectInfoResponse
+from basic_memory.schemas.project_info import (
+    ProjectList,
+    ProjectItem,
+    ProjectInfoRequest,
+    ProjectStatusResponse,
+)
+
+# Router for resources in a specific project
+project_router = APIRouter(prefix="/project", tags=["project"])
+
+# Router for managing project resources
+project_resource_router = APIRouter(prefix="/projects", tags=["project_management"])
+
+
+@project_router.get("/info", response_model=ProjectInfoResponse)
+async def get_project_info(
+    project_service: ProjectServiceDep,
+    project: ProjectPathDep,
+) -> ProjectInfoResponse:
+    """Get comprehensive information about the specified Basic Memory project."""
+    return await project_service.get_project_info(project)
+
+
+# Update a project
+@project_router.patch("/{name}", response_model=ProjectStatusResponse)
+async def update_project(
+    project_service: ProjectServiceDep,
+    name: str = Path(..., description="Name of the project to update"),
+    path: Optional[str] = Body(None, description="New absolute path for the project"),
+    is_active: Optional[bool] = Body(None, description="Status of the project (active/inactive)"),
+) -> ProjectStatusResponse:
+    """Update a project's information in configuration and database.
+
+    Args:
+        name: The name of the project to update
+        path: Optional new absolute path for the project
+        is_active: Optional status update for the project
+
+    Returns:
+        Response confirming the project was updated
+    """
+    try:
+        # Validate that path is absolute if provided
+        if path and not os.path.isabs(path):
+            raise HTTPException(status_code=400, detail="Path must be absolute")
+
+        # Get original project info for the response
+        old_project_info = ProjectItem(
+            name=name,
+            path=project_service.projects.get(name, ""),
+        )
+
+        if path:
+            await project_service.move_project(name, path)
+        elif is_active is not None:
+            await project_service.update_project(name, is_active=is_active)
+
+        # Get updated project info
+        updated_path = path if path else project_service.projects.get(name, "")
+
+        return ProjectStatusResponse(
+            message=f"Project '{name}' updated successfully",
+            status="success",
+            default=(name == project_service.default_project),
+            old_project=old_project_info,
+            new_project=ProjectItem(name=name, path=updated_path),
+        )
+    except ValueError as e:
+        raise HTTPException(status_code=400, detail=str(e))
+
+
+# List all available projects
+@project_resource_router.get("/projects", response_model=ProjectList)
+async def list_projects(
+    project_service: ProjectServiceDep,
+) -> ProjectList:
+    """List all configured projects.
+
+    Returns:
+        A list of all projects with metadata
+    """
+    projects = await project_service.list_projects()
+    default_project = project_service.default_project
+
+    project_items = [
+        ProjectItem(
+            name=project.name,
+            path=project.path,
+            is_default=project.is_default or False,
+        )
+        for project in projects
+    ]
+
+    return ProjectList(
+        projects=project_items,
+        default_project=default_project,
+    )
+
+
+# Add a new project
+@project_resource_router.post("/projects", response_model=ProjectStatusResponse)
+async def add_project(
+    project_data: ProjectInfoRequest,
+    project_service: ProjectServiceDep,
+) -> ProjectStatusResponse:
+    """Add a new project to configuration and database.
+
+    Args:
+        project_data: The project name and path, with option to set as default
+
+    Returns:
+        Response confirming the project was added
+    """
+    try:  # pragma: no cover
+        await project_service.add_project(
+            project_data.name, project_data.path, set_default=project_data.set_default
+        )
+
+        return ProjectStatusResponse(  # pyright: ignore [reportCallIssue]
+            message=f"Project '{project_data.name}' added successfully",
+            status="success",
+            default=project_data.set_default,
+            new_project=ProjectItem(
+                name=project_data.name, path=project_data.path, is_default=project_data.set_default
+            ),
+        )
+    except ValueError as e:  # pragma: no cover
+        raise HTTPException(status_code=400, detail=str(e))
+
+
+# Remove a project
+@project_resource_router.delete("/{name}", response_model=ProjectStatusResponse)
+async def remove_project(
+    project_service: ProjectServiceDep,
+    name: str = Path(..., description="Name of the project to remove"),
+) -> ProjectStatusResponse:
+    """Remove a project from configuration and database.
+
+    Args:
+        name: The name of the project to remove
+
+    Returns:
+        Response confirming the project was removed
+    """
+    try:
+        old_project = await project_service.get_project(name)
+        if not old_project:  # pragma: no cover
+            raise HTTPException(
+                status_code=404, detail=f"Project: '{name}' does not exist"
+            )  # pragma: no cover
+
+        await project_service.remove_project(name)
+
+        return ProjectStatusResponse(
+            message=f"Project '{name}' removed successfully",
+            status="success",
+            default=False,
+            old_project=ProjectItem(name=old_project.name, path=old_project.path),
+            new_project=None,
+        )
+    except ValueError as e:  # pragma: no cover
+        raise HTTPException(status_code=400, detail=str(e))
+
+
+# Set a project as default
+@project_resource_router.put("/{name}/default", response_model=ProjectStatusResponse)
+async def set_default_project(
+    project_service: ProjectServiceDep,
+    name: str = Path(..., description="Name of the project to set as default"),
+) -> ProjectStatusResponse:
+    """Set a project as the default project.
+
+    Args:
+        name: The name of the project to set as default
+
+    Returns:
+        Response confirming the project was set as default
+    """
+    try:
+        # Get the old default project
+        default_name = project_service.default_project
+        default_project = await project_service.get_project(default_name)
+        if not default_project:  # pragma: no cover
+            raise HTTPException(  # pragma: no cover
+                status_code=404, detail=f"Default Project: '{default_name}' does not exist"
+            )
+
+        # get the new project
+        new_default_project = await project_service.get_project(name)
+        if not new_default_project:  # pragma: no cover
+            raise HTTPException(
+                status_code=404, detail=f"Project: '{name}' does not exist"
+            )  # pragma: no cover
+
+        await project_service.set_default_project(name)
+
+        return ProjectStatusResponse(
+            message=f"Project '{name}' set as default successfully",
+            status="success",
+            default=True,
+            old_project=ProjectItem(name=default_name, path=default_project.path),
+            new_project=ProjectItem(
+                name=name,
+                path=new_default_project.path,
+                is_default=True,
+            ),
+        )
+    except ValueError as e:  # pragma: no cover
+        raise HTTPException(status_code=400, detail=str(e))
+
+
+# Synchronize projects between config and database
+@project_resource_router.post("/sync", response_model=ProjectStatusResponse)
+async def synchronize_projects(
+    project_service: ProjectServiceDep,
+) -> ProjectStatusResponse:
+    """Synchronize projects between configuration file and database.
+
+    Ensures that all projects in the configuration file exist in the database
+    and vice versa.
+
+    Returns:
+        Response confirming synchronization was completed
+    """
+    try:  # pragma: no cover
+        await project_service.synchronize_projects()
+
+        return ProjectStatusResponse(  # pyright: ignore [reportCallIssue]
+            message="Projects synchronized successfully between configuration and database",
+            status="success",
+            default=False,
+        )
+    except ValueError as e:  # pragma: no cover
+        raise HTTPException(status_code=400, detail=str(e))
@@ -0,0 +1,260 @@
+"""Router for prompt-related operations.
+
+This router is responsible for rendering various prompts using Handlebars templates.
+It centralizes all prompt formatting logic that was previously in the MCP prompts.
+"""
+
+from datetime import datetime, timezone
+from fastapi import APIRouter, HTTPException, status
+from loguru import logger
+
+from basic_memory.api.routers.utils import to_graph_context, to_search_results
+from basic_memory.api.template_loader import template_loader
+from basic_memory.schemas.base import parse_timeframe
+from basic_memory.deps import (
+    ContextServiceDep,
+    EntityRepositoryDep,
+    SearchServiceDep,
+    EntityServiceDep,
+)
+from basic_memory.schemas.prompt import (
+    ContinueConversationRequest,
+    SearchPromptRequest,
+    PromptResponse,
+    PromptMetadata,
+)
+from basic_memory.schemas.search import SearchItemType, SearchQuery
+
+router = APIRouter(prefix="/prompt", tags=["prompt"])
+
+
+@router.post("/continue-conversation", response_model=PromptResponse)
+async def continue_conversation(
+    search_service: SearchServiceDep,
+    entity_service: EntityServiceDep,
+    context_service: ContextServiceDep,
+    entity_repository: EntityRepositoryDep,
+    request: ContinueConversationRequest,
+) -> PromptResponse:
+    """Generate a prompt for continuing a conversation.
+
+    This endpoint takes a topic and/or timeframe and generates a prompt with
+    relevant context from the knowledge base.
+
+    Args:
+        request: The request parameters
+
+    Returns:
+        Formatted continuation prompt with context
+    """
+    logger.info(
+        f"Generating continue conversation prompt, topic: {request.topic}, timeframe: {request.timeframe}"
+    )
+
+    since = parse_timeframe(request.timeframe) if request.timeframe else None
+
+    # Initialize search results
+    search_results = []
+
+    # Get data needed for template
+    if request.topic:
+        query = SearchQuery(text=request.topic, after_date=request.timeframe)
+        results = await search_service.search(query, limit=request.search_items_limit)
+        search_results = await to_search_results(entity_service, results)
+
+        # Build context from results
+        all_hierarchical_results = []
+        for result in search_results:
+            if hasattr(result, "permalink") and result.permalink:
+                # Get hierarchical context using the new dataclass-based approach
+                context_result = await context_service.build_context(
+                    result.permalink,
+                    depth=request.depth,
+                    since=since,
+                    max_related=request.related_items_limit,
+                    include_observations=True,  # Include observations for entities
+                )
+
+                # Process results into the schema format
+                graph_context = await to_graph_context(
+                    context_result, entity_repository=entity_repository
+                )
+
+                # Add results to our collection (limit to top results for each permalink)
+                if graph_context.results:
+                    all_hierarchical_results.extend(graph_context.results[:3])
+
+        # Limit to a reasonable number of total results
+        all_hierarchical_results = all_hierarchical_results[:10]
+
+        template_context = {
+            "topic": request.topic,
+            "timeframe": request.timeframe,
+            "hierarchical_results": all_hierarchical_results,
+            "has_results": len(all_hierarchical_results) > 0,
+        }
+    else:
+        # If no topic, get recent activity
+        context_result = await context_service.build_context(
+            types=[SearchItemType.ENTITY],
+            depth=request.depth,
+            since=since,
+            max_related=request.related_items_limit,
+            include_observations=True,
+        )
+        recent_context = await to_graph_context(context_result, entity_repository=entity_repository)
+
+        hierarchical_results = recent_context.results[:5]  # Limit to top 5 recent items
+
+        template_context = {
+            "topic": f"Recent Activity from ({request.timeframe})",
+            "timeframe": request.timeframe,
+            "hierarchical_results": hierarchical_results,
+            "has_results": len(hierarchical_results) > 0,
+        }
+
+    try:
+        # Render template
+        rendered_prompt = await template_loader.render(
+            "prompts/continue_conversation.hbs", template_context
+        )
+
+        # Calculate metadata
+        # Count items of different types
+        observation_count = 0
+        relation_count = 0
+        entity_count = 0
+
+        # Get the hierarchical results from the template context
+        hierarchical_results_for_count = template_context.get("hierarchical_results", [])
+
+        # For topic-based search
+        if request.topic:
+            for item in hierarchical_results_for_count:
+                if hasattr(item, "observations"):
+                    observation_count += len(item.observations) if item.observations else 0
+
+                if hasattr(item, "related_results"):
+                    for related in item.related_results or []:
+                        if hasattr(related, "type"):
+                            if related.type == "relation":
+                                relation_count += 1
+                            elif related.type == "entity":  # pragma: no cover
+                                entity_count += 1  # pragma: no cover
+        # For recent activity
+        else:
+            for item in hierarchical_results_for_count:
+                if hasattr(item, "observations"):
+                    observation_count += len(item.observations) if item.observations else 0
+
+                if hasattr(item, "related_results"):
+                    for related in item.related_results or []:
+                        if hasattr(related, "type"):
+                            if related.type == "relation":
+                                relation_count += 1
+                            elif related.type == "entity":  # pragma: no cover
+                                entity_count += 1  # pragma: no cover
+
+        # Build metadata
+        metadata = {
+            "query": request.topic,
+            "timeframe": request.timeframe,
+            "search_count": len(search_results)
+            if request.topic
+            else 0,  # Original search results count
+            "context_count": len(hierarchical_results_for_count),
+            "observation_count": observation_count,
+            "relation_count": relation_count,
+            "total_items": (
+                len(hierarchical_results_for_count)
+                + observation_count
+                + relation_count
+                + entity_count
+            ),
+            "search_limit": request.search_items_limit,
+            "context_depth": request.depth,
+            "related_limit": request.related_items_limit,
+            "generated_at": datetime.now(timezone.utc).isoformat(),
+        }
+
+        prompt_metadata = PromptMetadata(**metadata)
+
+        return PromptResponse(
+            prompt=rendered_prompt, context=template_context, metadata=prompt_metadata
+        )
+    except Exception as e:
+        logger.error(f"Error rendering continue conversation template: {e}")
+        raise HTTPException(
+            status_code=status.HTTP_500_INTERNAL_SERVER_ERROR,
+            detail=f"Error rendering prompt template: {str(e)}",
+        )
+
+
+@router.post("/search", response_model=PromptResponse)
+async def search_prompt(
+    search_service: SearchServiceDep,
+    entity_service: EntityServiceDep,
+    request: SearchPromptRequest,
+    page: int = 1,
+    page_size: int = 10,
+) -> PromptResponse:
+    """Generate a prompt for search results.
+
+    This endpoint takes a search query and formats the results into a helpful
+    prompt with context and suggestions.
+
+    Args:
+        request: The search parameters
+        page: The page number for pagination
+        page_size: The number of results per page, defaults to 10
+
+    Returns:
+        Formatted search results prompt with context
+    """
+    logger.info(f"Generating search prompt, query: {request.query}, timeframe: {request.timeframe}")
+
+    limit = page_size
+    offset = (page - 1) * page_size
+
+    query = SearchQuery(text=request.query, after_date=request.timeframe)
+    results = await search_service.search(query, limit=limit, offset=offset)
+    search_results = await to_search_results(entity_service, results)
+
+    template_context = {
+        "query": request.query,
+        "timeframe": request.timeframe,
+        "results": search_results,
+        "has_results": len(search_results) > 0,
+        "result_count": len(search_results),
+    }
+
+    try:
+        # Render template
+        rendered_prompt = await template_loader.render("prompts/search.hbs", template_context)
+
+        # Build metadata
+        metadata = {
+            "query": request.query,
+            "timeframe": request.timeframe,
+            "search_count": len(search_results),
+            "context_count": len(search_results),
+            "observation_count": 0,  # Search results don't include observations
+            "relation_count": 0,  # Search results don't include relations
+            "total_items": len(search_results),
+            "search_limit": limit,
+            "context_depth": 0,  # No context depth for basic search
+            "related_limit": 0,  # No related items for basic search
+            "generated_at": datetime.now(timezone.utc).isoformat(),
+        }
+
+        prompt_metadata = PromptMetadata(**metadata)
+
+        return PromptResponse(
+            prompt=rendered_prompt, context=template_context, metadata=prompt_metadata
+        )
+    except Exception as e:
+        logger.error(f"Error rendering search template: {e}")
+        raise HTTPException(
+            status_code=status.HTTP_500_INTERNAL_SERVER_ERROR,
+            detail=f"Error rendering prompt template: {str(e)}",
+        )
@@ -1,34 +1,225 @@
 """Routes for getting entity content."""

+import tempfile
 from pathlib import Path
+from typing import Annotated

-from fastapi import APIRouter, HTTPException
-from fastapi.responses import FileResponse
+from fastapi import APIRouter, HTTPException, BackgroundTasks, Body
+from fastapi.responses import FileResponse, JSONResponse
 from loguru import logger

-from basic_memory.deps import ProjectConfigDep, LinkResolverDep
+from basic_memory.deps import (
+    ProjectConfigDep,
+    LinkResolverDep,
+    SearchServiceDep,
+    EntityServiceDep,
+    FileServiceDep,
+    EntityRepositoryDep,
+)
+from basic_memory.repository.search_repository import SearchIndexRow
+from basic_memory.schemas.memory import normalize_memory_url
+from basic_memory.schemas.search import SearchQuery, SearchItemType
+from basic_memory.models.knowledge import Entity as EntityModel
+from datetime import datetime

 router = APIRouter(prefix="/resource", tags=["resources"])


+def get_entity_ids(item: SearchIndexRow) -> set[int]:
+    match item.type:
+        case SearchItemType.ENTITY:
+            return {item.id}
+        case SearchItemType.OBSERVATION:
+            return {item.entity_id}  # pyright: ignore [reportReturnType]
+        case SearchItemType.RELATION:
+            from_entity = item.from_id
+            to_entity = item.to_id  # pyright: ignore [reportReturnType]
+            return {from_entity, to_entity} if to_entity else {from_entity}  # pyright: ignore [reportReturnType]
+        case _:  # pragma: no cover
+            raise ValueError(f"Unexpected type: {item.type}")
+
+
@router.get("/{identifier:path}")
 async def get_resource_content(
    config: ProjectConfigDep,
    link_resolver: LinkResolverDep,
+    search_service: SearchServiceDep,
+    entity_service: EntityServiceDep,
+    file_service: FileServiceDep,
+    background_tasks: BackgroundTasks,
    identifier: str,
+    page: int = 1,
+    page_size: int = 10,
 ) -> FileResponse:
    """Get resource content by identifier: name or permalink."""
-    logger.debug(f"Getting content for permalink: {identifier}")
+    logger.debug(f"Getting content for: {identifier}")

-    # Find entity by permalink
+    # Find single entity by permalink
    entity = await link_resolver.resolve_link(identifier)
-    if not entity:
-        raise HTTPException(status_code=404, detail=f"Entity not found: {identifier}")
+    results = [entity] if entity else []

-    file_path = Path(f"{config.home}/{entity.file_path}")
-    if not file_path.exists():
-        raise HTTPException(
-            status_code=404,
-            detail=f"File not found: {file_path}",
+    # pagination for multiple results
+    limit = page_size
+    offset = (page - 1) * page_size
+
+    # search using the identifier as a permalink
+    if not results:
+        # if the identifier contains a wildcard, use GLOB search
+        query = (
+            SearchQuery(permalink_match=identifier)
+            if "*" in identifier
+            else SearchQuery(permalink=identifier)
        )
-    return FileResponse(path=file_path)
+        search_results = await search_service.search(query, limit, offset)
+        if not search_results:
+            raise HTTPException(status_code=404, detail=f"Resource not found: {identifier}")
+
+        # get the deduplicated entities related to the search results
+        entity_ids = {id for result in search_results for id in get_entity_ids(result)}
+        results = await entity_service.get_entities_by_id(list(entity_ids))
+
+    # return single response
+    if len(results) == 1:
+        entity = results[0]
+        file_path = Path(f"{config.home}/{entity.file_path}")
+        if not file_path.exists():
+            raise HTTPException(
+                status_code=404,
+                detail=f"File not found: {file_path}",
+            )
+        return FileResponse(path=file_path)
+
+    # for multiple files, initialize a temporary file for writing the results
+    with tempfile.NamedTemporaryFile(delete=False, mode="w", suffix=".md") as tmp_file:
+        temp_file_path = tmp_file.name
+
+        for result in results:
+            # Read content for each entity
+            content = await file_service.read_entity_content(result)
+            memory_url = normalize_memory_url(result.permalink)
+            modified_date = result.updated_at.isoformat()
+            checksum = result.checksum[:8] if result.checksum else ""
+
+            # Prepare the delimited content
+            response_content = f"--- {memory_url} {modified_date} {checksum}\n"
+            response_content += f"\n{content}\n"
+            response_content += "\n"
+
+            # Write content directly to the temporary file in append mode
+            tmp_file.write(response_content)
+
+        # Ensure all content is written to disk
+        tmp_file.flush()
+
+    # Schedule the temporary file to be deleted after the response
+    background_tasks.add_task(cleanup_temp_file, temp_file_path)
+
+    # Return the file response
+    return FileResponse(path=temp_file_path)
+
+
+def cleanup_temp_file(file_path: str):
+    """Delete the temporary file."""
+    try:
+        Path(file_path).unlink()  # Deletes the file
+        logger.debug(f"Temporary file deleted: {file_path}")
+    except Exception as e:  # pragma: no cover
+        logger.error(f"Error deleting temporary file {file_path}: {e}")
+
+
+@router.put("/{file_path:path}")
+async def write_resource(
+    config: ProjectConfigDep,
+    file_service: FileServiceDep,
+    entity_repository: EntityRepositoryDep,
+    search_service: SearchServiceDep,
+    file_path: str,
+    content: Annotated[str, Body()],
+) -> JSONResponse:
+    """Write content to a file in the project.
+
+    This endpoint allows writing content directly to a file in the project.
+    Also creates an entity record and indexes the file for search.
+
+    Args:
+        file_path: Path to write to, relative to project root
+        request: Contains the content to write
+
+    Returns:
+        JSON response with file information
+    """
+    try:
+        # Get content from request body
+
+        # Ensure it's UTF-8 string content
+        if isinstance(content, bytes):  # pragma: no cover
+            content_str = content.decode("utf-8")
+        else:
+            content_str = str(content)
+
+        # Get full file path
+        full_path = Path(f"{config.home}/{file_path}")
+
+        # Ensure parent directory exists
+        full_path.parent.mkdir(parents=True, exist_ok=True)
+
+        # Write content to file
+        checksum = await file_service.write_file(full_path, content_str)
+
+        # Get file info
+        file_stats = file_service.file_stats(full_path)
+
+        # Determine file details
+        file_name = Path(file_path).name
+        content_type = file_service.content_type(full_path)
+
+        entity_type = "canvas" if file_path.endswith(".canvas") else "file"
+
+        # Check if entity already exists
+        existing_entity = await entity_repository.get_by_file_path(file_path)
+
+        if existing_entity:
+            # Update existing entity
+            entity = await entity_repository.update(
+                existing_entity.id,
+                {
+                    "title": file_name,
+                    "entity_type": entity_type,
+                    "content_type": content_type,
+                    "file_path": file_path,
+                    "checksum": checksum,
+                    "updated_at": datetime.fromtimestamp(file_stats.st_mtime).astimezone(),
+                },
+            )
+            status_code = 200
+        else:
+            # Create a new entity model
+            entity = EntityModel(
+                title=file_name,
+                entity_type=entity_type,
+                content_type=content_type,
+                file_path=file_path,
+                checksum=checksum,
+                created_at=datetime.fromtimestamp(file_stats.st_ctime).astimezone(),
+                updated_at=datetime.fromtimestamp(file_stats.st_mtime).astimezone(),
+            )
+            entity = await entity_repository.add(entity)
+            status_code = 201
+
+        # Index the file for search
+        await search_service.index_entity(entity)  # pyright: ignore
+
+        # Return success response
+        return JSONResponse(
+            status_code=status_code,
+            content={
+                "file_path": file_path,
+                "checksum": checksum,
+                "size": file_stats.st_size,
+                "created_at": file_stats.st_ctime,
+                "modified_at": file_stats.st_mtime,
+            },
+        )
+    except Exception as e:  # pragma: no cover
+        logger.error(f"Error writing resource {file_path}: {e}")
+        raise HTTPException(status_code=500, detail=f"Failed to write resource: {str(e)}")
@@ -1,28 +1,36 @@
 """Router for search operations."""

-from dataclasses import asdict
+from fastapi import APIRouter, BackgroundTasks

-from fastapi import APIRouter, Depends, BackgroundTasks
-
-from basic_memory.services.search_service import SearchService
-from basic_memory.schemas.search import SearchQuery, SearchResult, SearchResponse
-from basic_memory.deps import get_search_service
+from basic_memory.api.routers.utils import to_search_results
+from basic_memory.schemas.search import SearchQuery, SearchResponse
+from basic_memory.deps import SearchServiceDep, EntityServiceDep

 router = APIRouter(prefix="/search", tags=["search"])


@router.post("/", response_model=SearchResponse)
-async def search(query: SearchQuery, search_service: SearchService = Depends(get_search_service)):
+async def search(
+    query: SearchQuery,
+    search_service: SearchServiceDep,
+    entity_service: EntityServiceDep,
+    page: int = 1,
+    page_size: int = 10,
+):
    """Search across all knowledge and documents."""
-    results = await search_service.search(query)
-    search_results = [SearchResult.model_validate(asdict(r)) for r in results]
-    return SearchResponse(results=search_results)
+    limit = page_size
+    offset = (page - 1) * page_size
+    results = await search_service.search(query, limit=limit, offset=offset)
+    search_results = await to_search_results(entity_service, results)
+    return SearchResponse(
+        results=search_results,
+        current_page=page,
+        page_size=page_size,
+    )


@router.post("/reindex")
-async def reindex(
-    background_tasks: BackgroundTasks, search_service: SearchService = Depends(get_search_service)
-):
+async def reindex(background_tasks: BackgroundTasks, search_service: SearchServiceDep):
    """Recreate and populate the search index."""
    await search_service.reindex_all(background_tasks=background_tasks)
    return {"status": "ok", "message": "Reindex initiated"}
@@ -0,0 +1,130 @@
+from typing import Optional, List
+
+from basic_memory.repository import EntityRepository
+from basic_memory.repository.search_repository import SearchIndexRow
+from basic_memory.schemas.memory import (
+    EntitySummary,
+    ObservationSummary,
+    RelationSummary,
+    MemoryMetadata,
+    GraphContext,
+    ContextResult,
+)
+from basic_memory.schemas.search import SearchItemType, SearchResult
+from basic_memory.services import EntityService
+from basic_memory.services.context_service import (
+    ContextResultRow,
+    ContextResult as ServiceContextResult,
+)
+
+
+async def to_graph_context(
+    context_result: ServiceContextResult,
+    entity_repository: EntityRepository,
+    page: Optional[int] = None,
+    page_size: Optional[int] = None,
+):
+    # Helper function to convert items to summaries
+    async def to_summary(item: SearchIndexRow | ContextResultRow):
+        match item.type:
+            case SearchItemType.ENTITY:
+                return EntitySummary(
+                    title=item.title,  # pyright: ignore
+                    permalink=item.permalink,
+                    content=item.content,
+                    file_path=item.file_path,
+                    created_at=item.created_at,
+                )
+            case SearchItemType.OBSERVATION:
+                return ObservationSummary(
+                    title=item.title,  # pyright: ignore
+                    file_path=item.file_path,
+                    category=item.category,  # pyright: ignore
+                    content=item.content,  # pyright: ignore
+                    permalink=item.permalink,  # pyright: ignore
+                    created_at=item.created_at,
+                )
+            case SearchItemType.RELATION:
+                from_entity = await entity_repository.find_by_id(item.from_id)  # pyright: ignore
+                to_entity = await entity_repository.find_by_id(item.to_id) if item.to_id else None
+                return RelationSummary(
+                    title=item.title,  # pyright: ignore
+                    file_path=item.file_path,
+                    permalink=item.permalink,  # pyright: ignore
+                    relation_type=item.relation_type,  # pyright: ignore
+                    from_entity=from_entity.title if from_entity else None,
+                    to_entity=to_entity.title if to_entity else None,
+                    created_at=item.created_at,
+                )
+            case _:  # pragma: no cover
+                raise ValueError(f"Unexpected type: {item.type}")
+
+    # Process the hierarchical results
+    hierarchical_results = []
+    for context_item in context_result.results:
+        # Process primary result
+        primary_result = await to_summary(context_item.primary_result)
+
+        # Process observations
+        observations = []
+        for obs in context_item.observations:
+            observations.append(await to_summary(obs))
+
+        # Process related results
+        related = []
+        for rel in context_item.related_results:
+            related.append(await to_summary(rel))
+
+        # Add to hierarchical results
+        hierarchical_results.append(
+            ContextResult(
+                primary_result=primary_result,
+                observations=observations,
+                related_results=related,
+            )
+        )
+
+    # Create schema metadata from service metadata
+    metadata = MemoryMetadata(
+        uri=context_result.metadata.uri,
+        types=context_result.metadata.types,
+        depth=context_result.metadata.depth,
+        timeframe=context_result.metadata.timeframe,
+        generated_at=context_result.metadata.generated_at,
+        primary_count=context_result.metadata.primary_count,
+        related_count=context_result.metadata.related_count,
+        total_results=context_result.metadata.primary_count + context_result.metadata.related_count,
+        total_relations=context_result.metadata.total_relations,
+        total_observations=context_result.metadata.total_observations,
+    )
+
+    # Return new GraphContext with just hierarchical results
+    return GraphContext(
+        results=hierarchical_results,
+        metadata=metadata,
+        page=page,
+        page_size=page_size,
+    )
+
+
+async def to_search_results(entity_service: EntityService, results: List[SearchIndexRow]):
+    search_results = []
+    for r in results:
+        entities = await entity_service.get_entities_by_id([r.entity_id, r.from_id, r.to_id])  # pyright: ignore
+        search_results.append(
+            SearchResult(
+                title=r.title,  # pyright: ignore
+                type=r.type,  # pyright: ignore
+                permalink=r.permalink,
+                score=r.score,  # pyright: ignore
+                entity=entities[0].permalink if entities else None,
+                content=r.content,
+                file_path=r.file_path,
+                metadata=r.metadata,
+                category=r.category,
+                from_entity=entities[0].permalink if entities else None,
+                to_entity=entities[1].permalink if len(entities) > 1 else None,
+                relation_type=r.relation_type,
+            )
+        )
+    return search_results
@@ -0,0 +1,292 @@
+"""Template loading and rendering utilities for the Basic Memory API.
+
+This module handles the loading and rendering of Handlebars templates from the
+templates directory, providing a consistent interface for all prompt-related
+formatting needs.
+"""
+
+import textwrap
+from typing import Dict, Any, Optional, Callable
+from pathlib import Path
+import json
+import datetime
+
+import pybars
+from loguru import logger
+
+# Get the base path of the templates directory
+TEMPLATES_DIR = Path(__file__).parent.parent / "templates"
+
+
+# Custom helpers for Handlebars
+def _date_helper(this, *args):
+    """Format a date using the given format string."""
+    if len(args) < 1:  # pragma: no cover
+        return ""
+
+    timestamp = args[0]
+    format_str = args[1] if len(args) > 1 else "%Y-%m-%d %H:%M"
+
+    if hasattr(timestamp, "strftime"):
+        result = timestamp.strftime(format_str)
+    elif isinstance(timestamp, str):
+        try:
+            dt = datetime.datetime.fromisoformat(timestamp)
+            result = dt.strftime(format_str)
+        except ValueError:
+            result = timestamp
+    else:
+        result = str(timestamp)  # pragma: no cover
+
+    return pybars.strlist([result])
+
+
+def _default_helper(this, *args):
+    """Return a default value if the given value is None or empty."""
+    if len(args) < 2:  # pragma: no cover
+        return ""
+
+    value = args[0]
+    default_value = args[1]
+
+    result = default_value if value is None or value == "" else value
+    # Use strlist for consistent handling of HTML escaping
+    return pybars.strlist([str(result)])
+
+
+def _capitalize_helper(this, *args):
+    """Capitalize the first letter of a string."""
+    if len(args) < 1:  # pragma: no cover
+        return ""
+
+    text = args[0]
+    if not text or not isinstance(text, str):  # pragma: no cover
+        result = ""
+    else:
+        result = text.capitalize()
+
+    return pybars.strlist([result])
+
+
+def _round_helper(this, *args):
+    """Round a number to the specified number of decimal places."""
+    if len(args) < 1:
+        return ""
+
+    value = args[0]
+    decimal_places = args[1] if len(args) > 1 else 2
+
+    try:
+        result = str(round(float(value), int(decimal_places)))
+    except (ValueError, TypeError):
+        result = str(value)
+
+    return pybars.strlist([result])
+
+
+def _size_helper(this, *args):
+    """Return the size/length of a collection."""
+    if len(args) < 1:
+        return 0
+
+    value = args[0]
+    if value is None:
+        result = "0"
+    elif isinstance(value, (list, tuple, dict, str)):
+        result = str(len(value))  # pragma: no cover
+    else:  # pragma: no cover
+        result = "0"
+
+    return pybars.strlist([result])
+
+
+def _json_helper(this, *args):
+    """Convert a value to a JSON string."""
+    if len(args) < 1:  # pragma: no cover
+        return "{}"
+
+    value = args[0]
+    # For pybars, we need to return a SafeString to prevent HTML escaping
+    result = json.dumps(value)  # pragma: no cover
+    # Safe string implementation to prevent HTML escaping
+    return pybars.strlist([result])
+
+
+def _math_helper(this, *args):
+    """Perform basic math operations."""
+    if len(args) < 3:
+        return pybars.strlist(["Math error: Insufficient arguments"])
+
+    lhs = args[0]
+    operator = args[1]
+    rhs = args[2]
+
+    try:
+        lhs = float(lhs)
+        rhs = float(rhs)
+        if operator == "+":
+            result = str(lhs + rhs)
+        elif operator == "-":
+            result = str(lhs - rhs)
+        elif operator == "*":
+            result = str(lhs * rhs)
+        elif operator == "/":
+            result = str(lhs / rhs)
+        else:
+            result = f"Unsupported operator: {operator}"
+    except (ValueError, TypeError) as e:
+        result = f"Math error: {e}"
+
+    return pybars.strlist([result])
+
+
+def _lt_helper(this, *args):
+    """Check if left hand side is less than right hand side."""
+    if len(args) < 2:
+        return False
+
+    lhs = args[0]
+    rhs = args[1]
+
+    try:
+        return float(lhs) < float(rhs)
+    except (ValueError, TypeError):
+        # Fall back to string comparison for non-numeric values
+        return str(lhs) < str(rhs)
+
+
+def _if_cond_helper(this, options, condition):
+    """Block helper for custom if conditionals."""
+    if condition:
+        return options["fn"](this)
+    elif "inverse" in options:
+        return options["inverse"](this)
+    return ""  # pragma: no cover
+
+
+def _dedent_helper(this, options):
+    """Dedent a block of text to remove common leading whitespace.
+
+    Usage:
+    {{#dedent}}
+        This text will have its
+        common leading whitespace removed
+        while preserving relative indentation.
+    {{/dedent}}
+    """
+    if "fn" not in options:  # pragma: no cover
+        return ""
+
+    # Get the content from the block
+    content = options["fn"](this)
+
+    # Convert to string if it's a strlist
+    if (
+        isinstance(content, list)
+        or hasattr(content, "__iter__")
+        and not isinstance(content, (str, bytes))
+    ):
+        content_str = "".join(str(item) for item in content)  # pragma: no cover
+    else:
+        content_str = str(content)  # pragma: no cover
+
+    # Add trailing and leading newlines to ensure proper dedenting
+    # This is critical for textwrap.dedent to work correctly with mixed content
+    content_str = "\n" + content_str + "\n"
+
+    # Use textwrap to dedent the content and remove the extra newlines we added
+    dedented = textwrap.dedent(content_str)[1:-1]
+
+    # Return as a SafeString to prevent HTML escaping
+    return pybars.strlist([dedented])  # pragma: no cover
+
+
+class TemplateLoader:
+    """Loader for Handlebars templates.
+
+    This class is responsible for loading templates from disk and rendering
+    them with the provided context data.
+    """
+
+    def __init__(self, template_dir: Optional[str] = None):
+        """Initialize the template loader.
+
+        Args:
+            template_dir: Optional custom template directory path
+        """
+        self.template_dir = Path(template_dir) if template_dir else TEMPLATES_DIR
+        self.template_cache: Dict[str, Callable] = {}
+        self.compiler = pybars.Compiler()
+
+        # Set up standard helpers
+        self.helpers = {
+            "date": _date_helper,
+            "default": _default_helper,
+            "capitalize": _capitalize_helper,
+            "round": _round_helper,
+            "size": _size_helper,
+            "json": _json_helper,
+            "math": _math_helper,
+            "lt": _lt_helper,
+            "if_cond": _if_cond_helper,
+            "dedent": _dedent_helper,
+        }
+
+        logger.debug(f"Initialized template loader with directory: {self.template_dir}")
+
+    def get_template(self, template_path: str) -> Callable:
+        """Get a template by path, using cache if available.
+
+        Args:
+            template_path: The path to the template, relative to the templates directory
+
+        Returns:
+            The compiled Handlebars template
+
+        Raises:
+            FileNotFoundError: If the template doesn't exist
+        """
+        if template_path in self.template_cache:
+            return self.template_cache[template_path]
+
+        # Convert from Liquid-style path to Handlebars extension
+        if template_path.endswith(".liquid"):
+            template_path = template_path.replace(".liquid", ".hbs")
+        elif not template_path.endswith(".hbs"):
+            template_path = f"{template_path}.hbs"
+
+        full_path = self.template_dir / template_path
+
+        if not full_path.exists():
+            raise FileNotFoundError(f"Template not found: {full_path}")
+
+        with open(full_path, "r", encoding="utf-8") as f:
+            template_str = f.read()
+
+        template = self.compiler.compile(template_str)
+        self.template_cache[template_path] = template
+
+        logger.debug(f"Loaded template: {template_path}")
+        return template
+
+    async def render(self, template_path: str, context: Dict[str, Any]) -> str:
+        """Render a template with the given context.
+
+        Args:
+            template_path: The path to the template, relative to the templates directory
+            context: The context data to pass to the template
+
+        Returns:
+            The rendered template as a string
+        """
+        template = self.get_template(template_path)
+        return template(context, helpers=self.helpers)
+
+    def clear_cache(self) -> None:
+        """Clear the template cache."""
+        self.template_cache.clear()
+        logger.debug("Template cache cleared")
+
+
+# Global template loader instance
+template_loader = TemplateLoader()
@@ -1,3 +1,73 @@
+from typing import Optional
+
 import typer

-app = typer.Typer()
+from basic_memory.config import get_project_config, ConfigManager
+from basic_memory.mcp.project_session import session
+
+
+def version_callback(value: bool) -> None:
+    """Show version and exit."""
+    if value:  # pragma: no cover
+        import basic_memory
+
+        config = get_project_config()
+        typer.echo(f"Basic Memory version: {basic_memory.__version__}")
+        typer.echo(f"Current project: {config.project}")
+        typer.echo(f"Project path: {config.home}")
+        raise typer.Exit()
+
+
+app = typer.Typer(name="basic-memory")
+
+
+@app.callback()
+def app_callback(
+    ctx: typer.Context,
+    project: Optional[str] = typer.Option(
+        None,
+        "--project",
+        "-p",
+        help="Specify which project to use 1",
+        envvar="BASIC_MEMORY_PROJECT",
+    ),
+    version: Optional[bool] = typer.Option(
+        None,
+        "--version",
+        "-v",
+        help="Show version and exit.",
+        callback=version_callback,
+        is_eager=True,
+    ),
+) -> None:
+    """Basic Memory - Local-first personal knowledge management."""
+
+    # Run initialization for every command unless --version was specified
+    if not version and ctx.invoked_subcommand is not None:
+        from basic_memory.services.initialization import ensure_initialization
+
+        app_config = ConfigManager().config
+        ensure_initialization(app_config)
+
+        # Initialize MCP session with the specified project or default
+        if project:  # pragma: no cover
+            # Use the project specified via --project flag
+            current_project_config = get_project_config(project)
+            session.set_current_project(current_project_config.name)
+
+            # Update the global config to use this project
+            from basic_memory.config import update_current_project
+
+            update_current_project(project)
+        else:
+            # Use the default project
+            current_project = app_config.default_project
+            session.set_current_project(current_project)
+
+
+# Register sub-command groups
+import_app = typer.Typer(help="Import data from various sources")
+app.add_typer(import_app, name="import")
+
+claude_app = typer.Typer()
+import_app.add_typer(claude_app, name="claude")
@@ -1,5 +1,17 @@
 """CLI commands for basic-memory."""

-from . import status, sync, db, import_memory_json, mcp
+from . import status, sync, db, import_memory_json, mcp, import_claude_conversations
+from . import import_claude_projects, import_chatgpt, tool, project

-__all__ = ["status", "sync", "db", "import_memory_json", "mcp"]
+__all__ = [
+    "status",
+    "sync",
+    "db",
+    "import_memory_json",
+    "mcp",
+    "import_claude_conversations",
+    "import_claude_projects",
+    "import_chatgpt",
+    "tool",
+    "project",
+]
@@ -1,25 +1,44 @@
 """Database management commands."""

 import asyncio
+
 import typer
 from loguru import logger

-from basic_memory.alembic import migrations
+from basic_memory import db
 from basic_memory.cli.app import app
+from basic_memory.config import ConfigManager, BasicMemoryConfig, save_basic_memory_config


@app.command()
 def reset(
-    reindex: bool = typer.Option(False, "--reindex", help="Rebuild indices from filesystem"),
+    reindex: bool = typer.Option(False, "--reindex", help="Rebuild db index from filesystem"),
 ):  # pragma: no cover
    """Reset database (drop all tables and recreate)."""
-    if typer.confirm("This will delete all data. Are you sure?"):
+    if typer.confirm("This will delete all data in your db. Are you sure?"):
        logger.info("Resetting database...")
-        asyncio.run(migrations.reset_database())
+        config_manager = ConfigManager()
+        app_config = config_manager.config
+        # Get database path
+        db_path = app_config.app_database_path
+
+        # Delete the database file if it exists
+        if db_path.exists():
+            db_path.unlink()
+            logger.info(f"Database file deleted: {db_path}")
+
+        # Reset project configuration
+        config = BasicMemoryConfig()
+        save_basic_memory_config(config_manager.config_file, config)
+        logger.info("Project configuration reset to default")
+
+        # Create a new empty database
+        asyncio.run(db.run_migrations(app_config))
+        logger.info("Database reset complete")

        if reindex:
            # Import and run sync
            from basic_memory.cli.commands.sync import sync

            logger.info("Rebuilding search index from filesystem...")
-            asyncio.run(sync())  # pyright: ignore
+            sync(watch=False)  # pyright: ignore
@@ -0,0 +1,83 @@
+"""Import command for ChatGPT conversations."""
+
+import asyncio
+import json
+from pathlib import Path
+from typing import Annotated
+
+import typer
+from basic_memory.cli.app import import_app
+from basic_memory.config import get_project_config
+from basic_memory.importers import ChatGPTImporter
+from basic_memory.markdown import EntityParser, MarkdownProcessor
+from loguru import logger
+from rich.console import Console
+from rich.panel import Panel
+
+console = Console()
+
+
+async def get_markdown_processor() -> MarkdownProcessor:
+    """Get MarkdownProcessor instance."""
+    config = get_project_config()
+    entity_parser = EntityParser(config.home)
+    return MarkdownProcessor(entity_parser)
+
+
+@import_app.command(name="chatgpt", help="Import conversations from ChatGPT JSON export.")
+def import_chatgpt(
+    conversations_json: Annotated[
+        Path, typer.Argument(help="Path to ChatGPT conversations.json file")
+    ] = Path("conversations.json"),
+    folder: Annotated[
+        str, typer.Option(help="The folder to place the files in.")
+    ] = "conversations",
+):
+    """Import chat conversations from ChatGPT JSON format.
+
+    This command will:
+    1. Read the complex tree structure of messages
+    2. Convert them to linear markdown conversations
+    3. Save as clean, readable markdown files
+
+    After importing, run 'basic-memory sync' to index the new files.
+    """
+
+    try:
+        if not conversations_json.exists():  # pragma: no cover
+            typer.echo(f"Error: File not found: {conversations_json}", err=True)
+            raise typer.Exit(1)
+
+        # Get markdown processor
+        markdown_processor = asyncio.run(get_markdown_processor())
+        config = get_project_config()
+        # Process the file
+        base_path = config.home / folder
+        console.print(f"\nImporting chats from {conversations_json}...writing to {base_path}")
+
+        # Create importer and run import
+        importer = ChatGPTImporter(config.home, markdown_processor)
+        with conversations_json.open("r", encoding="utf-8") as file:
+            json_data = json.load(file)
+            result = asyncio.run(importer.import_data(json_data, folder))
+
+        if not result.success:  # pragma: no cover
+            typer.echo(f"Error during import: {result.error_message}", err=True)
+            raise typer.Exit(1)
+
+        # Show results
+        console.print(
+            Panel(
+                f"[green]Import complete![/green]\n\n"
+                f"Imported {result.conversations} conversations\n"
+                f"Containing {result.messages} messages",
+                expand=False,
+            )
+        )
+
+        console.print("\nRun 'basic-memory sync' to index the new files.")
+
+    except Exception as e:
+        logger.error("Import failed")
+        typer.echo(f"Error during import: {e}", err=True)
+        raise typer.Exit(1)
@@ -0,0 +1,86 @@
+"""Import command for basic-memory CLI to import chat data from conversations2.json format."""
+
+import asyncio
+import json
+from pathlib import Path
+from typing import Annotated
+
+import typer
+from basic_memory.cli.app import claude_app
+from basic_memory.config import get_project_config
+from basic_memory.importers.claude_conversations_importer import ClaudeConversationsImporter
+from basic_memory.markdown import EntityParser, MarkdownProcessor
+from loguru import logger
+from rich.console import Console
+from rich.panel import Panel
+
+console = Console()
+
+
+async def get_markdown_processor() -> MarkdownProcessor:
+    """Get MarkdownProcessor instance."""
+    config = get_project_config()
+    entity_parser = EntityParser(config.home)
+    return MarkdownProcessor(entity_parser)
+
+
+@claude_app.command(name="conversations", help="Import chat conversations from Claude.ai.")
+def import_claude(
+    conversations_json: Annotated[
+        Path, typer.Argument(..., help="Path to conversations.json file")
+    ] = Path("conversations.json"),
+    folder: Annotated[
+        str, typer.Option(help="The folder to place the files in.")
+    ] = "conversations",
+):
+    """Import chat conversations from conversations2.json format.
+
+    This command will:
+    1. Read chat data and nested messages
+    2. Create markdown files for each conversation
+    3. Format content in clean, readable markdown
+
+    After importing, run 'basic-memory sync' to index the new files.
+    """
+
+    config = get_project_config()
+    try:
+        if not conversations_json.exists():
+            typer.echo(f"Error: File not found: {conversations_json}", err=True)
+            raise typer.Exit(1)
+
+        # Get markdown processor
+        markdown_processor = asyncio.run(get_markdown_processor())
+
+        # Create the importer
+        importer = ClaudeConversationsImporter(config.home, markdown_processor)
+
+        # Process the file
+        base_path = config.home / folder
+        console.print(f"\nImporting chats from {conversations_json}...writing to {base_path}")
+
+        # Run the import
+        with conversations_json.open("r", encoding="utf-8") as file:
+            json_data = json.load(file)
+            result = asyncio.run(importer.import_data(json_data, folder))
+
+        if not result.success:  # pragma: no cover
+            typer.echo(f"Error during import: {result.error_message}", err=True)
+            raise typer.Exit(1)
+
+        # Show results
+        console.print(
+            Panel(
+                f"[green]Import complete![/green]\n\n"
+                f"Imported {result.conversations} conversations\n"
+                f"Containing {result.messages} messages",
+                expand=False,
+            )
+        )
+
+        console.print("\nRun 'basic-memory sync' to index the new files.")
+
+    except Exception as e:
+        logger.error("Import failed")
+        typer.echo(f"Error during import: {e}", err=True)
+        raise typer.Exit(1)
@@ -0,0 +1,85 @@
+"""Import command for basic-memory CLI to import project data from Claude.ai."""
+
+import asyncio
+import json
+from pathlib import Path
+from typing import Annotated
+
+import typer
+from basic_memory.cli.app import claude_app
+from basic_memory.config import get_project_config
+from basic_memory.importers.claude_projects_importer import ClaudeProjectsImporter
+from basic_memory.markdown import EntityParser, MarkdownProcessor
+from loguru import logger
+from rich.console import Console
+from rich.panel import Panel
+
+console = Console()
+
+
+async def get_markdown_processor() -> MarkdownProcessor:
+    """Get MarkdownProcessor instance."""
+    config = get_project_config()
+    entity_parser = EntityParser(config.home)
+    return MarkdownProcessor(entity_parser)
+
+
+@claude_app.command(name="projects", help="Import projects from Claude.ai.")
+def import_projects(
+    projects_json: Annotated[Path, typer.Argument(..., help="Path to projects.json file")] = Path(
+        "projects.json"
+    ),
+    base_folder: Annotated[
+        str, typer.Option(help="The base folder to place project files in.")
+    ] = "projects",
+):
+    """Import project data from Claude.ai.
+
+    This command will:
+    1. Create a directory for each project
+    2. Store docs in a docs/ subdirectory
+    3. Place prompt template in project root
+
+    After importing, run 'basic-memory sync' to index the new files.
+    """
+    config = get_project_config()
+    try:
+        if not projects_json.exists():
+            typer.echo(f"Error: File not found: {projects_json}", err=True)
+            raise typer.Exit(1)
+
+        # Get markdown processor
+        markdown_processor = asyncio.run(get_markdown_processor())
+
+        # Create the importer
+        importer = ClaudeProjectsImporter(config.home, markdown_processor)
+
+        # Process the file
+        base_path = config.home / base_folder if base_folder else config.home
+        console.print(f"\nImporting projects from {projects_json}...writing to {base_path}")
+
+        # Run the import
+        with projects_json.open("r", encoding="utf-8") as file:
+            json_data = json.load(file)
+            result = asyncio.run(importer.import_data(json_data, base_folder))
+
+        if not result.success:  # pragma: no cover
+            typer.echo(f"Error during import: {result.error_message}", err=True)
+            raise typer.Exit(1)
+
+        # Show results
+        console.print(
+            Panel(
+                f"[green]Import complete![/green]\n\n"
+                f"Imported {result.documents} project documents\n"
+                f"Imported {result.prompts} prompt templates",
+                expand=False,
+            )
+        )
+
+        console.print("\nRun 'basic-memory sync' to index the new files.")
+
+    except Exception as e:
+        logger.error("Import failed")
+        typer.echo(f"Error during import: {e}", err=True)
+        raise typer.Exit(1)
@@ -3,104 +3,35 @@
 import asyncio
 import json
 from pathlib import Path
-from typing import Dict, Any, List
+from typing import Annotated

 import typer
+from basic_memory.cli.app import import_app
+from basic_memory.config import get_project_config
+from basic_memory.importers.memory_json_importer import MemoryJsonImporter
+from basic_memory.markdown import EntityParser, MarkdownProcessor
 from loguru import logger
 from rich.console import Console
 from rich.panel import Panel
-from rich.progress import Progress, SpinnerColumn, TextColumn, BarColumn
-
-from basic_memory.cli.app import app
-from basic_memory.config import config
-from basic_memory.markdown import EntityParser, MarkdownProcessor
-from basic_memory.markdown.schemas import EntityMarkdown, EntityFrontmatter, Observation, Relation
-

 console = Console()


-async def process_memory_json(
-    json_path: Path, base_path: Path, markdown_processor: MarkdownProcessor
-):
-    """Import entities from memory.json using markdown processor."""
-
-    # First pass - collect all relations by source entity
-    entity_relations: Dict[str, List[Relation]] = {}
-    entities: Dict[str, Dict[str, Any]] = {}
-
-    with Progress(
-        SpinnerColumn(),
-        TextColumn("[progress.description]{task.description}"),
-        BarColumn(),
-        TextColumn("[progress.percentage]{task.percentage:>3.0f}%"),
-        console=console,
-    ) as progress:
-        read_task = progress.add_task("Reading memory.json...", total=None)
-
-        # First pass - collect entities and relations
-        with open(json_path) as f:
-            lines = f.readlines()
-            progress.update(read_task, total=len(lines))
-
-            for line in lines:
-                data = json.loads(line)
-                if data["type"] == "entity":
-                    entities[data["name"]] = data
-                elif data["type"] == "relation":
-                    # Store relation with its source entity
-                    source = data.get("from") or data.get("from_id")
-                    if source not in entity_relations:
-                        entity_relations[source] = []
-                    entity_relations[source].append(
-                        Relation(
-                            type=data.get("relationType") or data.get("relation_type"),
-                            target=data.get("to") or data.get("to_id"),
-                        )
-                    )
-                progress.update(read_task, advance=1)
-
-        # Second pass - create and write entities
-        write_task = progress.add_task("Creating entities...", total=len(entities))
-
-        entities_created = 0
-        for name, entity_data in entities.items():
-            entity = EntityMarkdown(
-                frontmatter=EntityFrontmatter(
-                    metadata={
-                        "type": entity_data["entityType"],
-                        "title": name,
-                        "permalink": f"{entity_data['entityType']}/{name}",
-                    }
-                ),
-                content=f"# {name}\n",
-                observations=[Observation(content=obs) for obs in entity_data["observations"]],
-                relations=entity_relations.get(
-                    name, []
-                ),  # Add any relations where this entity is the source
-            )
-
-            # Let markdown processor handle writing
-            file_path = base_path / f"{entity_data['entityType']}/{name}.md"
-            await markdown_processor.write_file(file_path, entity)
-            entities_created += 1
-            progress.update(write_task, advance=1)
-
-    return {
-        "entities": entities_created,
-        "relations": sum(len(rels) for rels in entity_relations.values()),
-    }
-
-
 async def get_markdown_processor() -> MarkdownProcessor:
    """Get MarkdownProcessor instance."""
+    config = get_project_config()
    entity_parser = EntityParser(config.home)
    return MarkdownProcessor(entity_parser)


-@app.command()
-def import_json(
-    json_path: Path = typer.Argument(..., help="Path to memory.json file to import"),
+@import_app.command()
+def memory_json(
+    json_path: Annotated[Path, typer.Argument(..., help="Path to memory.json file")] = Path(
+        "memory.json"
+    ),
+    destination_folder: Annotated[
+        str, typer.Option(help="Optional destination folder within the project")
+    ] = "",
 ):
    """Import entities and relations from a memory.json file.

@@ -116,21 +47,37 @@ def import_json(
        typer.echo(f"Error: File not found: {json_path}", err=True)
        raise typer.Exit(1)

+    config = get_project_config()
    try:
        # Get markdown processor
        markdown_processor = asyncio.run(get_markdown_processor())

+        # Create the importer
+        importer = MemoryJsonImporter(config.home, markdown_processor)
+
        # Process the file
-        base_path = config.home
+        base_path = config.home if not destination_folder else config.home / destination_folder
        console.print(f"\nImporting from {json_path}...writing to {base_path}")
-        results = asyncio.run(process_memory_json(json_path, base_path, markdown_processor))
+
+        # Run the import for json log format
+        file_data = []
+        with json_path.open("r", encoding="utf-8") as file:
+            for line in file:
+                json_data = json.loads(line)
+                file_data.append(json_data)
+        result = asyncio.run(importer.import_data(file_data, destination_folder))
+
+        if not result.success:  # pragma: no cover
+            typer.echo(f"Error during import: {result.error_message}", err=True)
+            raise typer.Exit(1)

        # Show results
        console.print(
            Panel(
                f"[green]Import complete![/green]\n\n"
-                f"Created {results['entities']} entities\n"
-                f"Added {results['relations']} relations",
+                f"Created {result.entities} entities\n"
+                f"Added {result.relations} relations\n"
+                f"Skipped {result.skipped_entities} entities\n",
                expand=False,
            )
        )
@@ -138,6 +85,6 @@ def import_json(
        console.print("\nRun 'basic-memory sync' to index the new files.")

    except Exception as e:
-        logger.exception("Import failed")
+        logger.error("Import failed")
        typer.echo(f"Error during import: {e}", err=True)
        raise typer.Exit(1)
@@ -1,8 +1,10 @@
-"""MCP server command."""
+"""MCP server command with streamable HTTP transport."""
+
+import asyncio
+import typer

-from loguru import logger
 from basic_memory.cli.app import app
-from basic_memory.config import config
+from basic_memory.config import ConfigManager

 # Import mcp instance
 from basic_memory.mcp.server import mcp as mcp_server  # pragma: no cover
@@ -10,11 +12,66 @@ from basic_memory.mcp.server import mcp as mcp_server  # pragma: no cover
 # Import mcp tools to register them
 import basic_memory.mcp.tools  # noqa: F401  # pragma: no cover

+# Import prompts to register them
+import basic_memory.mcp.prompts  # noqa: F401  # pragma: no cover
+from loguru import logger
+

@app.command()
-def mcp():
-    """Run the MCP server for Claude Desktop integration."""
-    home_dir = config.home
-    logger.info("Starting Basic Memory MCP server")
-    logger.info(f"Home directory: {home_dir}")
-    mcp_server.run()
+def mcp(
+    transport: str = typer.Option("stdio", help="Transport type: stdio, streamable-http, or sse"),
+    host: str = typer.Option(
+        "0.0.0.0", help="Host for HTTP transports (use 0.0.0.0 to allow external connections)"
+    ),
+    port: int = typer.Option(8000, help="Port for HTTP transports"),
+    path: str = typer.Option("/mcp", help="Path prefix for streamable-http transport"),
+):  # pragma: no cover
+    """Run the MCP server with configurable transport options.
+
+    This command starts an MCP server using one of three transport options:
+
+    - stdio: Standard I/O (good for local usage)
+    - streamable-http: Recommended for web deployments (default)
+    - sse: Server-Sent Events (for compatibility with existing clients)
+    """
+
+    from basic_memory.services.initialization import initialize_file_sync
+
+    # Use unified thread-based sync approach for both transports
+    import threading
+
+    app_config = ConfigManager().config
+
+    def run_file_sync():
+        """Run file sync in a separate thread with its own event loop."""
+        loop = asyncio.new_event_loop()
+        asyncio.set_event_loop(loop)
+        try:
+            loop.run_until_complete(initialize_file_sync(app_config))
+        except Exception as e:
+            logger.error(f"File sync error: {e}", err=True)
+        finally:
+            loop.close()
+
+    logger.info(f"Sync changes enabled: {app_config.sync_changes}")
+    if app_config.sync_changes:
+        # Start the sync thread
+        sync_thread = threading.Thread(target=run_file_sync, daemon=True)
+        sync_thread.start()
+        logger.info("Started file sync in background")
+
+    # Now run the MCP server (blocks)
+    logger.info(f"Starting MCP server with {transport.upper()} transport")
+
+    if transport == "stdio":
+        mcp_server.run(
+            transport=transport,
+        )
+    elif transport == "streamable-http" or transport == "sse":
+        mcp_server.run(
+            transport=transport,
+            host=host,
+            port=port,
+            path=path,
+            log_level="INFO",
+        )
@@ -0,0 +1,338 @@
+"""Command module for basic-memory project management."""
+
+import asyncio
+import os
+from pathlib import Path
+
+import typer
+from rich.console import Console
+from rich.table import Table
+
+from basic_memory.cli.app import app
+from basic_memory.mcp.project_session import session
+from basic_memory.mcp.resources.project_info import project_info
+import json
+from datetime import datetime
+
+from rich.panel import Panel
+from rich.tree import Tree
+from basic_memory.mcp.async_client import client
+from basic_memory.mcp.tools.utils import call_get
+from basic_memory.schemas.project_info import ProjectList
+from basic_memory.mcp.tools.utils import call_post
+from basic_memory.schemas.project_info import ProjectStatusResponse
+from basic_memory.mcp.tools.utils import call_delete
+from basic_memory.mcp.tools.utils import call_put
+from basic_memory.utils import generate_permalink
+from basic_memory.mcp.tools.utils import call_patch
+
+console = Console()
+
+# Create a project subcommand
+project_app = typer.Typer(help="Manage multiple Basic Memory projects")
+app.add_typer(project_app, name="project")
+
+
+def format_path(path: str) -> str:
+    """Format a path for display, using ~ for home directory."""
+    home = str(Path.home())
+    if path.startswith(home):
+        return path.replace(home, "~", 1)  # pragma: no cover
+    return path
+
+
+@project_app.command("list")
+def list_projects() -> None:
+    """List all configured projects."""
+    # Use API to list projects
+    try:
+        response = asyncio.run(call_get(client, "/projects/projects"))
+        result = ProjectList.model_validate(response.json())
+
+        table = Table(title="Basic Memory Projects")
+        table.add_column("Name", style="cyan")
+        table.add_column("Path", style="green")
+        table.add_column("Default", style="yellow")
+        table.add_column("Active", style="magenta")
+
+        for project in result.projects:
+            is_default = "✓" if project.is_default else ""
+            is_active = "✓" if session.get_current_project() == project.name else ""
+            table.add_row(project.name, format_path(project.path), is_default, is_active)
+
+        console.print(table)
+    except Exception as e:
+        console.print(f"[red]Error listing projects: {str(e)}[/red]")
+        raise typer.Exit(1)
+
+
+@project_app.command("add")
+def add_project(
+    name: str = typer.Argument(..., help="Name of the project"),
+    path: str = typer.Argument(..., help="Path to the project directory"),
+    set_default: bool = typer.Option(False, "--default", help="Set as default project"),
+) -> None:
+    """Add a new project."""
+    # Resolve to absolute path
+    resolved_path = Path(os.path.abspath(os.path.expanduser(path))).as_posix()
+
+    try:
+        data = {"name": name, "path": resolved_path, "set_default": set_default}
+
+        response = asyncio.run(call_post(client, "/projects/projects", json=data))
+        result = ProjectStatusResponse.model_validate(response.json())
+
+        console.print(f"[green]{result.message}[/green]")
+    except Exception as e:
+        console.print(f"[red]Error adding project: {str(e)}[/red]")
+        raise typer.Exit(1)
+
+    # Display usage hint
+    console.print("\nTo use this project:")
+    console.print(f"  basic-memory --project={name} <command>")
+    console.print("  # or")
+    console.print(f"  basic-memory project default {name}")
+
+
+@project_app.command("remove")
+def remove_project(
+    name: str = typer.Argument(..., help="Name of the project to remove"),
+) -> None:
+    """Remove a project from configuration."""
+    try:
+        project_permalink = generate_permalink(name)
+        response = asyncio.run(call_delete(client, f"/projects/{project_permalink}"))
+        result = ProjectStatusResponse.model_validate(response.json())
+
+        console.print(f"[green]{result.message}[/green]")
+    except Exception as e:
+        console.print(f"[red]Error removing project: {str(e)}[/red]")
+        raise typer.Exit(1)
+
+    # Show this message regardless of method used
+    console.print("[yellow]Note: The project files have not been deleted from disk.[/yellow]")
+
+
+@project_app.command("default")
+def set_default_project(
+    name: str = typer.Argument(..., help="Name of the project to set as default"),
+) -> None:
+    """Set the default project and activate it for the current session."""
+    try:
+        project_permalink = generate_permalink(name)
+        response = asyncio.run(call_put(client, f"/projects/{project_permalink}/default"))
+        result = ProjectStatusResponse.model_validate(response.json())
+
+        console.print(f"[green]{result.message}[/green]")
+    except Exception as e:
+        console.print(f"[red]Error setting default project: {str(e)}[/red]")
+        raise typer.Exit(1)
+
+    # The API call above should have updated both config and MCP session
+    # No need for manual reload - the project service handles this automatically
+    console.print("[green]Project activated for current session[/green]")
+
+
+@project_app.command("sync-config")
+def synchronize_projects() -> None:
+    """Synchronize project config between configuration file and database."""
+    # Call the API to synchronize projects
+
+    try:
+        response = asyncio.run(call_post(client, "/projects/sync"))
+        result = ProjectStatusResponse.model_validate(response.json())
+
+        console.print(f"[green]{result.message}[/green]")
+    except Exception as e:  # pragma: no cover
+        console.print(f"[red]Error synchronizing projects: {str(e)}[/red]")
+        raise typer.Exit(1)
+
+
+@project_app.command("move")
+def move_project(
+    name: str = typer.Argument(..., help="Name of the project to move"),
+    new_path: str = typer.Argument(..., help="New absolute path for the project"),
+) -> None:
+    """Move a project to a new location."""
+    # Resolve to absolute path
+    resolved_path = Path(os.path.abspath(os.path.expanduser(new_path))).as_posix()
+
+    try:
+        data = {"path": resolved_path}
+
+        project_permalink = generate_permalink(name)
+        current_project = session.get_current_project()
+        response = asyncio.run(
+            call_patch(client, f"/{current_project}/project/{project_permalink}", json=data)
+        )
+        result = ProjectStatusResponse.model_validate(response.json())
+
+        console.print(f"[green]{result.message}[/green]")
+
+        # Show important file movement reminder
+        console.print()  # Empty line for spacing
+        console.print(
+            Panel(
+                "[bold red]IMPORTANT:[/bold red] Project configuration updated successfully.\n\n"
+                "[yellow]You must manually move your project files from the old location to:[/yellow]\n"
+                f"[cyan]{resolved_path}[/cyan]\n\n"
+                "[dim]Basic Memory has only updated the configuration - your files remain in their original location.[/dim]",
+                title="⚠️  Manual File Movement Required",
+                border_style="yellow",
+                expand=False,
+            )
+        )
+
+    except Exception as e:
+        console.print(f"[red]Error moving project: {str(e)}[/red]")
+        raise typer.Exit(1)
+
+
+@project_app.command("info")
+def display_project_info(
+    json_output: bool = typer.Option(False, "--json", help="Output in JSON format"),
+):
+    """Display detailed information and statistics about the current project."""
+    try:
+        # Get project info
+        info = asyncio.run(project_info.fn())  # type: ignore  # pyright: ignore [reportAttributeAccessIssue]
+
+        if json_output:
+            # Convert to JSON and print
+            print(json.dumps(info.model_dump(), indent=2, default=str))
+        else:
+            # Create rich display
+            console = Console()
+
+            # Project configuration section
+            console.print(
+                Panel(
+                    f"[bold]Project:[/bold] {info.project_name}\n"
+                    f"[bold]Path:[/bold] {info.project_path}\n"
+                    f"[bold]Default Project:[/bold] {info.default_project}\n",
+                    title="📊 Basic Memory Project Info",
+                    expand=False,
+                )
+            )
+
+            # Statistics section
+            stats_table = Table(title="📈 Statistics")
+            stats_table.add_column("Metric", style="cyan")
+            stats_table.add_column("Count", style="green")
+
+            stats_table.add_row("Entities", str(info.statistics.total_entities))
+            stats_table.add_row("Observations", str(info.statistics.total_observations))
+            stats_table.add_row("Relations", str(info.statistics.total_relations))
+            stats_table.add_row(
+                "Unresolved Relations", str(info.statistics.total_unresolved_relations)
+            )
+            stats_table.add_row("Isolated Entities", str(info.statistics.isolated_entities))
+
+            console.print(stats_table)
+
+            # Entity types
+            if info.statistics.entity_types:
+                entity_types_table = Table(title="📑 Entity Types")
+                entity_types_table.add_column("Type", style="blue")
+                entity_types_table.add_column("Count", style="green")
+
+                for entity_type, count in info.statistics.entity_types.items():
+                    entity_types_table.add_row(entity_type, str(count))
+
+                console.print(entity_types_table)
+
+            # Most connected entities
+            if info.statistics.most_connected_entities:  # pragma: no cover
+                connected_table = Table(title="🔗 Most Connected Entities")
+                connected_table.add_column("Title", style="blue")
+                connected_table.add_column("Permalink", style="cyan")
+                connected_table.add_column("Relations", style="green")
+
+                for entity in info.statistics.most_connected_entities:
+                    connected_table.add_row(
+                        entity["title"], entity["permalink"], str(entity["relation_count"])
+                    )
+
+                console.print(connected_table)
+
+            # Recent activity
+            if info.activity.recently_updated:  # pragma: no cover
+                recent_table = Table(title="🕒 Recent Activity")
+                recent_table.add_column("Title", style="blue")
+                recent_table.add_column("Type", style="cyan")
+                recent_table.add_column("Last Updated", style="green")
+
+                for entity in info.activity.recently_updated[:5]:  # Show top 5
+                    updated_at = (
+                        datetime.fromisoformat(entity["updated_at"])
+                        if isinstance(entity["updated_at"], str)
+                        else entity["updated_at"]
+                    )
+                    recent_table.add_row(
+                        entity["title"],
+                        entity["entity_type"],
+                        updated_at.strftime("%Y-%m-%d %H:%M"),
+                    )
+
+                console.print(recent_table)
+
+            # System status
+            system_tree = Tree("🖥️ System Status")
+            system_tree.add(f"Basic Memory version: [bold green]{info.system.version}[/bold green]")
+            system_tree.add(
+                f"Database: [cyan]{info.system.database_path}[/cyan] ([green]{info.system.database_size}[/green])"
+            )
+
+            # Watch status
+            if info.system.watch_status:  # pragma: no cover
+                watch_branch = system_tree.add("Watch Service")
+                running = info.system.watch_status.get("running", False)
+                status_color = "green" if running else "red"
+                watch_branch.add(
+                    f"Status: [bold {status_color}]{'Running' if running else 'Stopped'}[/bold {status_color}]"
+                )
+
+                if running:
+                    start_time = (
+                        datetime.fromisoformat(info.system.watch_status.get("start_time", ""))
+                        if isinstance(info.system.watch_status.get("start_time"), str)
+                        else info.system.watch_status.get("start_time")
+                    )
+                    watch_branch.add(
+                        f"Running since: [cyan]{start_time.strftime('%Y-%m-%d %H:%M')}[/cyan]"
+                    )
+                    watch_branch.add(
+                        f"Files synced: [green]{info.system.watch_status.get('synced_files', 0)}[/green]"
+                    )
+                    watch_branch.add(
+                        f"Errors: [{'red' if info.system.watch_status.get('error_count', 0) > 0 else 'green'}]{info.system.watch_status.get('error_count', 0)}[/{'red' if info.system.watch_status.get('error_count', 0) > 0 else 'green'}]"
+                    )
+            else:
+                system_tree.add("[yellow]Watch service not running[/yellow]")
+
+            console.print(system_tree)
+
+            # Available projects
+            projects_table = Table(title="📁 Available Projects")
+            projects_table.add_column("Name", style="blue")
+            projects_table.add_column("Path", style="cyan")
+            projects_table.add_column("Default", style="green")
+
+            for name, proj_info in info.available_projects.items():
+                is_default = name == info.default_project
+                project_path = proj_info["path"]
+                projects_table.add_row(name, project_path, "✓" if is_default else "")
+
+            console.print(projects_table)
+
+            # Timestamp
+            current_time = (
+                datetime.fromisoformat(str(info.system.timestamp))
+                if isinstance(info.system.timestamp, str)
+                else info.system.timestamp
+            )
+            console.print(f"\nTimestamp: [cyan]{current_time.strftime('%Y-%m-%d %H:%M:%S')}[/cyan]")
+
+    except Exception as e:  # pragma: no cover
+        typer.echo(f"Error getting project info: {e}", err=True)
+        raise typer.Exit(1)
@@ -11,29 +11,15 @@ from rich.tree import Tree

 from basic_memory import db
 from basic_memory.cli.app import app
-from basic_memory.config import config
-from basic_memory.db import DatabaseType
-from basic_memory.repository import EntityRepository
-from basic_memory.sync import FileChangeScanner
-from basic_memory.sync.utils import SyncReport
+from basic_memory.cli.commands.sync import get_sync_service
+from basic_memory.config import ConfigManager, get_project_config
+from basic_memory.repository import ProjectRepository
+from basic_memory.sync.sync_service import SyncReport

 # Create rich console
 console = Console()


-async def get_file_change_scanner(
-    db_type=DatabaseType.FILESYSTEM,
-) -> FileChangeScanner:  # pragma: no cover
-    """Get sync service instance."""
-    async with db.engine_session_factory(db_path=config.database_path, db_type=db_type) as (
-        engine,
-        session_maker,
-    ):
-        entity_repository = EntityRepository(session_maker)
-        file_change_scanner = FileChangeScanner(entity_repository)
-        return file_change_scanner
-
-
 def add_files_to_tree(
    tree: Tree, paths: Set[str], style: str, checksums: Dict[str, str] | None = None
 ):
@@ -101,11 +87,11 @@ def build_directory_summary(counts: Dict[str, int]) -> str:
    return " ".join(parts)


-def display_changes(title: str, changes: SyncReport, verbose: bool = False):
+def display_changes(project_name: str, title: str, changes: SyncReport, verbose: bool = False):
    """Display changes using Rich for better visualization."""
-    tree = Tree(title)
+    tree = Tree(f"{project_name}: {title}")

-    if changes.total_changes == 0:
+    if changes.total == 0:
        tree.add("No changes")
        console.print(Panel(tree, expand=False))
        return
@@ -136,11 +122,24 @@ def display_changes(title: str, changes: SyncReport, verbose: bool = False):
    console.print(Panel(tree, expand=False))


-async def run_status(sync_service: FileChangeScanner, verbose: bool = False):
+async def run_status(verbose: bool = False):  # pragma: no cover
    """Check sync status of files vs database."""
    # Check knowledge/ directory
-    knowledge_changes = await sync_service.find_knowledge_changes(config.home)
-    display_changes("Knowledge Files", knowledge_changes, verbose)
+
+    app_config = ConfigManager().config
+    config = get_project_config()
+
+    _, session_maker = await db.get_or_create_db(
+        db_path=app_config.database_path, db_type=db.DatabaseType.FILESYSTEM
+    )
+    project_repository = ProjectRepository(session_maker)
+    project = await project_repository.get_by_name(config.project)
+    if not project:  # pragma: no cover
+        raise Exception(f"Project '{config.project}' not found")
+
+    sync_service = await get_sync_service(project)
+    knowledge_changes = await sync_service.scan(config.home)
+    display_changes(project.name, "Status", knowledge_changes, verbose)


@app.command()
@@ -149,8 +148,8 @@ def status(
 ):
    """Show sync status between files and database."""
    try:
-        sync_service = asyncio.run(get_file_change_scanner())
-        asyncio.run(run_status(sync_service, verbose))  # pragma: no cover
+        asyncio.run(run_status(verbose))  # pragma: no cover
    except Exception as e:
-        logger.exception(f"Error checking status: {e}")
+        logger.error(f"Error checking status: {e}")
+        typer.echo(f"Error checking status: {e}", err=True)
        raise typer.Exit(code=1)  # pragma: no cover
@@ -13,22 +13,22 @@ from rich.tree import Tree

 from basic_memory import db
 from basic_memory.cli.app import app
-from basic_memory.config import config
-from basic_memory.db import DatabaseType
+from basic_memory.config import ConfigManager, get_project_config
 from basic_memory.markdown import EntityParser
 from basic_memory.markdown.markdown_processor import MarkdownProcessor
+from basic_memory.models import Project
 from basic_memory.repository import (
    EntityRepository,
    ObservationRepository,
    RelationRepository,
+    ProjectRepository,
 )
 from basic_memory.repository.search_repository import SearchRepository
 from basic_memory.services import EntityService, FileService
 from basic_memory.services.link_resolver import LinkResolver
 from basic_memory.services.search_service import SearchService
-from basic_memory.sync import SyncService, FileChangeScanner
-from basic_memory.sync.utils import SyncReport
-from basic_memory.sync.watch_service import WatchService
+from basic_memory.sync import SyncService
+from basic_memory.sync.sync_service import SyncReport

 console = Console()

@@ -39,50 +39,51 @@ class ValidationIssue:
    error: str


-async def get_sync_service(db_type=DatabaseType.FILESYSTEM):  # pragma: no cover
+async def get_sync_service(project: Project) -> SyncService:  # pragma: no cover
    """Get sync service instance with all dependencies."""
-    async with db.engine_session_factory(db_path=config.database_path, db_type=db_type) as (
-        engine,
-        session_maker,
-    ):
-        entity_parser = EntityParser(config.home)
-        markdown_processor = MarkdownProcessor(entity_parser)
-        file_service = FileService(config.home, markdown_processor)

-        # Initialize repositories
-        entity_repository = EntityRepository(session_maker)
-        observation_repository = ObservationRepository(session_maker)
-        relation_repository = RelationRepository(session_maker)
-        search_repository = SearchRepository(session_maker)
+    app_config = ConfigManager().config
+    _, session_maker = await db.get_or_create_db(
+        db_path=app_config.database_path, db_type=db.DatabaseType.FILESYSTEM
+    )

-        # Initialize services
-        search_service = SearchService(search_repository, entity_repository, file_service)
-        link_resolver = LinkResolver(entity_repository, search_service)
+    project_path = Path(project.path)
+    entity_parser = EntityParser(project_path)
+    markdown_processor = MarkdownProcessor(entity_parser)
+    file_service = FileService(project_path, markdown_processor)

-        # Initialize scanner
-        file_change_scanner = FileChangeScanner(entity_repository)
+    # Initialize repositories
+    entity_repository = EntityRepository(session_maker, project_id=project.id)
+    observation_repository = ObservationRepository(session_maker, project_id=project.id)
+    relation_repository = RelationRepository(session_maker, project_id=project.id)
+    search_repository = SearchRepository(session_maker, project_id=project.id)

-        # Initialize services
-        entity_service = EntityService(
-            entity_parser,
-            entity_repository,
-            observation_repository,
-            relation_repository,
-            file_service,
-            link_resolver,
-        )
+    # Initialize services
+    search_service = SearchService(search_repository, entity_repository, file_service)
+    link_resolver = LinkResolver(entity_repository, search_service)

-        # Create sync service
-        sync_service = SyncService(
-            scanner=file_change_scanner,
-            entity_service=entity_service,
-            entity_parser=entity_parser,
-            entity_repository=entity_repository,
-            relation_repository=relation_repository,
-            search_service=search_service,
-        )
+    # Initialize services
+    entity_service = EntityService(
+        entity_parser,
+        entity_repository,
+        observation_repository,
+        relation_repository,
+        file_service,
+        link_resolver,
+    )

-        return sync_service
+    # Create sync service
+    sync_service = SyncService(
+        app_config=app_config,
+        entity_service=entity_service,
+        entity_parser=entity_parser,
+        entity_repository=entity_repository,
+        relation_repository=relation_repository,
+        search_service=search_service,
+        file_service=file_service,
+    )
+
+    return sync_service


 def group_issues_by_directory(issues: List[ValidationIssue]) -> Dict[str, List[ValidationIssue]]:
@@ -96,9 +97,12 @@ def group_issues_by_directory(issues: List[ValidationIssue]) -> Dict[str, List[V

 def display_sync_summary(knowledge: SyncReport):
    """Display a one-line summary of sync changes."""
-    total_changes = knowledge.total_changes
+    config = get_project_config()
+    total_changes = knowledge.total
+    project_name = config.project
+
    if total_changes == 0:
-        console.print("[green]Everything up to date[/green]")
+        console.print(f"[green]Project '{project_name}': Everything up to date[/green]")
        return

    # Format as: "Synced X files (A new, B modified, C moved, D deleted)"
@@ -117,18 +121,21 @@ def display_sync_summary(knowledge: SyncReport):
    if del_count:
        changes.append(f"[red]{del_count} deleted[/red]")

-    console.print(f"Synced {total_changes} files ({', '.join(changes)})")
+    console.print(f"Project '{project_name}': Synced {total_changes} files ({', '.join(changes)})")


 def display_detailed_sync_results(knowledge: SyncReport):
    """Display detailed sync results with trees."""
-    if knowledge.total_changes == 0:
-        console.print("\n[green]Everything up to date[/green]")
+    config = get_project_config()
+    project_name = config.project
+
+    if knowledge.total == 0:
+        console.print(f"\n[green]Project '{project_name}': Everything up to date[/green]")
        return

-    console.print("\n[bold]Sync Results[/bold]")
+    console.print(f"\n[bold]Sync Results for Project '{project_name}'[/bold]")

-    if knowledge.total_changes > 0:
+    if knowledge.total > 0:
        knowledge_tree = Tree("[bold]Knowledge Files[/bold]")
        if knowledge.new:
            created = knowledge_tree.add("[green]Created[/green]")
@@ -152,27 +159,53 @@ def display_detailed_sync_results(knowledge: SyncReport):
        console.print(knowledge_tree)


-async def run_sync(verbose: bool = False, watch: bool = False):
+async def run_sync(verbose: bool = False):
    """Run sync operation."""
-    sync_service = await get_sync_service()
+    app_config = ConfigManager().config
+    config = get_project_config()

-    # Start watching if requested
-    if watch:
-        watch_service = WatchService(
-            sync_service=sync_service,
-            file_service=sync_service.entity_service.file_service,
-            config=config,
-        )
-        await watch_service.handle_changes(config.home)
-        await watch_service.run()  # pragma: no cover
+    _, session_maker = await db.get_or_create_db(
+        db_path=app_config.database_path, db_type=db.DatabaseType.FILESYSTEM
+    )
+    project_repository = ProjectRepository(session_maker)
+    project = await project_repository.get_by_name(config.project)
+    if not project:  # pragma: no cover
+        raise Exception(f"Project '{config.project}' not found")
+
+    import time
+
+    start_time = time.time()
+
+    logger.info(
+        "Sync command started",
+        project=config.project,
+        verbose=verbose,
+        directory=str(config.home),
+    )
+
+    sync_service = await get_sync_service(project)
+
+    logger.info("Running one-time sync")
+    knowledge_changes = await sync_service.sync(config.home, project_name=project.name)
+
+    # Log results
+    duration_ms = int((time.time() - start_time) * 1000)
+    logger.info(
+        "Sync command completed",
+        project=config.project,
+        total_changes=knowledge_changes.total,
+        new_files=len(knowledge_changes.new),
+        modified_files=len(knowledge_changes.modified),
+        deleted_files=len(knowledge_changes.deleted),
+        moved_files=len(knowledge_changes.moves),
+        duration_ms=duration_ms,
+    )
+
+    # Display results
+    if verbose:
+        display_detailed_sync_results(knowledge_changes)
    else:
-        # one time sync
-        knowledge_changes = await sync_service.sync(config.home)
-        # Display results
-        if verbose:
-            display_detailed_sync_results(knowledge_changes)
-        else:
-            display_sync_summary(knowledge_changes)  # pragma: no cover
+        display_sync_summary(knowledge_changes)  # pragma: no cover


@app.command()
@@ -183,21 +216,27 @@ def sync(
        "-v",
        help="Show detailed sync information.",
    ),
-    watch: bool = typer.Option(
-        False,
-        "--watch",
-        "-w",
-        help="Start watching for changes after sync.",
-    ),
 ) -> None:
    """Sync knowledge files with the database."""
+    config = get_project_config()
+
    try:
+        # Show which project we're syncing
+        typer.echo(f"Syncing project: {config.project}")
+        typer.echo(f"Project path: {config.home}")
+
        # Run sync
-        asyncio.run(run_sync(verbose=verbose, watch=watch))
+        asyncio.run(run_sync(verbose=verbose))

    except Exception as e:  # pragma: no cover
        if not isinstance(e, typer.Exit):
-            logger.exception("Sync failed")
+            logger.exception(
+                "Sync command failed",
+                f"project={config.project},"
+                f"error={str(e)},"
+                f"error_type={type(e).__name__},"
+                f"directory={str(config.home)}",
+            )
            typer.echo(f"Error during sync: {e}", err=True)
            raise typer.Exit(1)
        raise
@@ -0,0 +1,270 @@
+"""CLI tool commands for Basic Memory."""
+
+import asyncio
+import sys
+from typing import Annotated, List, Optional
+
+import typer
+from loguru import logger
+from rich import print as rprint
+
+from basic_memory.cli.app import app
+
+# Import prompts
+from basic_memory.mcp.prompts.continue_conversation import (
+    continue_conversation as mcp_continue_conversation,
+)
+from basic_memory.mcp.prompts.recent_activity import (
+    recent_activity_prompt as recent_activity_prompt,
+)
+from basic_memory.mcp.tools import build_context as mcp_build_context
+from basic_memory.mcp.tools import read_note as mcp_read_note
+from basic_memory.mcp.tools import recent_activity as mcp_recent_activity
+from basic_memory.mcp.tools import search_notes as mcp_search
+from basic_memory.mcp.tools import write_note as mcp_write_note
+from basic_memory.schemas.base import TimeFrame
+from basic_memory.schemas.memory import MemoryUrl
+from basic_memory.schemas.search import SearchItemType
+
+tool_app = typer.Typer()
+app.add_typer(tool_app, name="tool", help="Access to MCP tools via CLI")
+
+
+@tool_app.command()
+def write_note(
+    title: Annotated[str, typer.Option(help="The title of the note")],
+    folder: Annotated[str, typer.Option(help="The folder to create the note in")],
+    content: Annotated[
+        Optional[str],
+        typer.Option(
+            help="The content of the note. If not provided, content will be read from stdin. This allows piping content from other commands, e.g.: cat file.md | basic-memory tools write-note"
+        ),
+    ] = None,
+    tags: Annotated[
+        Optional[List[str]], typer.Option(help="A list of tags to apply to the note")
+    ] = None,
+):
+    """Create or update a markdown note. Content can be provided as an argument or read from stdin.
+
+    Content can be provided in two ways:
+    1. Using the --content parameter
+    2. Piping content through stdin (if --content is not provided)
+
+    Examples:
+
+    # Using content parameter
+    basic-memory tools write-note --title "My Note" --folder "notes" --content "Note content"
+
+    # Using stdin pipe
+    echo "# My Note Content" | basic-memory tools write-note --title "My Note" --folder "notes"
+
+    # Using heredoc
+    cat << EOF | basic-memory tools write-note --title "My Note" --folder "notes"
+    # My Document
+
+    This is my document content.
+
+    - Point 1
+    - Point 2
+    EOF
+
+    # Reading from a file
+    cat document.md | basic-memory tools write-note --title "Document" --folder "docs"
+    """
+    try:
+        # If content is not provided, read from stdin
+        if content is None:
+            # Check if we're getting data from a pipe or redirect
+            if not sys.stdin.isatty():
+                content = sys.stdin.read()
+            else:  # pragma: no cover
+                # If stdin is a terminal (no pipe/redirect), inform the user
+                typer.echo(
+                    "No content provided. Please provide content via --content or by piping to stdin.",
+                    err=True,
+                )
+                raise typer.Exit(1)
+
+        # Also check for empty content
+        if content is not None and not content.strip():
+            typer.echo("Empty content provided. Please provide non-empty content.", err=True)
+            raise typer.Exit(1)
+
+        note = asyncio.run(mcp_write_note.fn(title, content, folder, tags))
+        rprint(note)
+    except Exception as e:  # pragma: no cover
+        if not isinstance(e, typer.Exit):
+            typer.echo(f"Error during write_note: {e}", err=True)
+            raise typer.Exit(1)
+        raise
+
+
+@tool_app.command()
+def read_note(identifier: str, page: int = 1, page_size: int = 10):
+    """Read a markdown note from the knowledge base."""
+    try:
+        note = asyncio.run(mcp_read_note.fn(identifier, page, page_size))
+        rprint(note)
+    except Exception as e:  # pragma: no cover
+        if not isinstance(e, typer.Exit):
+            typer.echo(f"Error during read_note: {e}", err=True)
+            raise typer.Exit(1)
+        raise
+
+
+@tool_app.command()
+def build_context(
+    url: MemoryUrl,
+    depth: Optional[int] = 1,
+    timeframe: Optional[TimeFrame] = "7d",
+    page: int = 1,
+    page_size: int = 10,
+    max_related: int = 10,
+):
+    """Get context needed to continue a discussion."""
+    try:
+        context = asyncio.run(
+            mcp_build_context.fn(
+                url=url,
+                depth=depth,
+                timeframe=timeframe,
+                page=page,
+                page_size=page_size,
+                max_related=max_related,
+            )
+        )
+        # Use json module for more controlled serialization
+        import json
+
+        context_dict = context.model_dump(exclude_none=True)
+        print(json.dumps(context_dict, indent=2, ensure_ascii=True, default=str))
+    except Exception as e:  # pragma: no cover
+        if not isinstance(e, typer.Exit):
+            typer.echo(f"Error during build_context: {e}", err=True)
+            raise typer.Exit(1)
+        raise
+
+
+@tool_app.command()
+def recent_activity(
+    type: Annotated[Optional[List[SearchItemType]], typer.Option()] = None,
+    depth: Optional[int] = 1,
+    timeframe: Optional[TimeFrame] = "7d",
+    page: int = 1,
+    page_size: int = 10,
+    max_related: int = 10,
+):
+    """Get recent activity across the knowledge base."""
+    try:
+        context = asyncio.run(
+            mcp_recent_activity.fn(
+                type=type,  # pyright: ignore [reportArgumentType]
+                depth=depth,
+                timeframe=timeframe,
+                page=page,
+                page_size=page_size,
+                max_related=max_related,
+            )
+        )
+        # Use json module for more controlled serialization
+        import json
+
+        context_dict = context.model_dump(exclude_none=True)
+        print(json.dumps(context_dict, indent=2, ensure_ascii=True, default=str))
+    except Exception as e:  # pragma: no cover
+        if not isinstance(e, typer.Exit):
+            typer.echo(f"Error during build_context: {e}", err=True)
+            raise typer.Exit(1)
+        raise
+
+
+@tool_app.command("search-notes")
+def search_notes(
+    query: str,
+    permalink: Annotated[bool, typer.Option("--permalink", help="Search permalink values")] = False,
+    title: Annotated[bool, typer.Option("--title", help="Search title values")] = False,
+    after_date: Annotated[
+        Optional[str],
+        typer.Option("--after_date", help="Search results after date, eg. '2d', '1 week'"),
+    ] = None,
+    page: int = 1,
+    page_size: int = 10,
+):
+    """Search across all content in the knowledge base."""
+    if permalink and title:  # pragma: no cover
+        print("Cannot search both permalink and title")
+        raise typer.Abort()
+
+    try:
+        if permalink and title:  # pragma: no cover
+            typer.echo(
+                "Use either --permalink or --title, not both. Exiting.",
+                err=True,
+            )
+            raise typer.Exit(1)
+
+        # set search type
+        search_type = ("permalink" if permalink else None,)
+        search_type = ("permalink_match" if permalink and "*" in query else None,)
+        search_type = ("title" if title else None,)
+        search_type = "text" if search_type is None else search_type
+
+        results = asyncio.run(
+            mcp_search.fn(
+                query,
+                search_type=search_type,
+                page=page,
+                after_date=after_date,
+                page_size=page_size,
+            )
+        )
+        # Use json module for more controlled serialization
+        import json
+
+        results_dict = results.model_dump(exclude_none=True)
+        print(json.dumps(results_dict, indent=2, ensure_ascii=True, default=str))
+    except Exception as e:  # pragma: no cover
+        if not isinstance(e, typer.Exit):
+            logger.exception("Error during search", e)
+            typer.echo(f"Error during search: {e}", err=True)
+            raise typer.Exit(1)
+        raise
+
+
+@tool_app.command(name="continue-conversation")
+def continue_conversation(
+    topic: Annotated[Optional[str], typer.Option(help="Topic or keyword to search for")] = None,
+    timeframe: Annotated[
+        Optional[str], typer.Option(help="How far back to look for activity")
+    ] = None,
+):
+    """Prompt to continue a previous conversation or work session."""
+    try:
+        # Prompt functions return formatted strings directly
+        session = asyncio.run(mcp_continue_conversation.fn(topic=topic, timeframe=timeframe))  # type: ignore
+        rprint(session)
+    except Exception as e:  # pragma: no cover
+        if not isinstance(e, typer.Exit):
+            logger.exception("Error continuing conversation", e)
+            typer.echo(f"Error continuing conversation: {e}", err=True)
+            raise typer.Exit(1)
+        raise
+
+
+# @tool_app.command(name="show-recent-activity")
+# def show_recent_activity(
+#     timeframe: Annotated[
+#         str, typer.Option(help="How far back to look for activity")
+#     ] = "7d",
+# ):
+#     """Prompt to show recent activity."""
+#     try:
+#         # Prompt functions return formatted strings directly
+#         session = asyncio.run(recent_activity_prompt(timeframe=timeframe))
+#         rprint(session)
+#     except Exception as e:  # pragma: no cover
+#         if not isinstance(e, typer.Exit):
+#             logger.exception("Error continuing conversation", e)
+#             typer.echo(f"Error continuing conversation: {e}", err=True)
+#             raise typer.Exit(1)
+#         raise
@@ -1,14 +1,21 @@
 """Main CLI entry point for basic-memory."""  # pragma: no cover

 from basic_memory.cli.app import app  # pragma: no cover
-from basic_memory.utils import setup_logging  # pragma: no cover

 # Register commands
-from basic_memory.cli.commands import status, sync, db, import_memory_json, mcp  # noqa: F401  # pragma: no cover
-
-
-# Set up logging when module is imported
-setup_logging(log_file=".basic-memory/basic-memory-cli.log")  # pragma: no cover
+from basic_memory.cli.commands import (  # noqa: F401  # pragma: no cover
+    db,
+    import_chatgpt,
+    import_claude_conversations,
+    import_claude_projects,
+    import_memory_json,
+    mcp,
+    project,
+    status,
+    sync,
+    tool,
+)

 if __name__ == "__main__":  # pragma: no cover
+    # start the app
    app()
@@ -1,32 +1,89 @@
 """Configuration management for basic-memory."""

+import json
+import os
+from dataclasses import dataclass
 from pathlib import Path
+from typing import Any, Dict, Literal, Optional, List, Tuple

+from loguru import logger
 from pydantic import Field, field_validator
 from pydantic_settings import BaseSettings, SettingsConfigDict

+import basic_memory
+from basic_memory.utils import setup_logging, generate_permalink
+
+
 DATABASE_NAME = "memory.db"
+APP_DATABASE_NAME = "memory.db"  # Using the same name but in the app directory
 DATA_DIR_NAME = ".basic-memory"
+CONFIG_FILE_NAME = "config.json"
+WATCH_STATUS_JSON = "watch-status.json"
+
+Environment = Literal["test", "dev", "user"]


-class ProjectConfig(BaseSettings):
+@dataclass
+class ProjectConfig:
    """Configuration for a specific basic-memory project."""

-    # Default to ~/basic-memory but allow override with env var: BASIC_MEMORY_HOME
-    home: Path = Field(
-        default_factory=lambda: Path.home() / "basic-memory",
-        description="Base path for basic-memory files",
+    name: str
+    home: Path
+
+    @property
+    def project(self):
+        return self.name
+
+    @property
+    def project_url(self) -> str:  # pragma: no cover
+        return f"/{generate_permalink(self.name)}"
+
+
+class BasicMemoryConfig(BaseSettings):
+    """Pydantic model for Basic Memory global configuration."""
+
+    env: Environment = Field(default="dev", description="Environment name")
+
+    projects: Dict[str, str] = Field(
+        default_factory=lambda: {
+            "main": Path(os.getenv("BASIC_MEMORY_HOME", Path.home() / "basic-memory")).as_posix()
+        },
+        description="Mapping of project names to their filesystem paths",
+    )
+    default_project: str = Field(
+        default="main",
+        description="Name of the default project to use",
    )

-    # Name of the project
-    project: str = Field(default="default", description="Project name")
+    # overridden by ~/.basic-memory/config.json
+    log_level: str = "INFO"

    # Watch service configuration
    sync_delay: int = Field(
-        default=500, description="Milliseconds to wait after changes before syncing", gt=0
+        default=1000, description="Milliseconds to wait after changes before syncing", gt=0
    )

-    log_level: str = "INFO"
+    # update permalinks on move
+    update_permalinks_on_move: bool = Field(
+        default=False,
+        description="Whether to update permalinks when files are moved or renamed. default (False)",
+    )
+
+    sync_changes: bool = Field(
+        default=True,
+        description="Whether to sync changes in real time. default (True)",
+    )
+
+    kebab_filenames: bool = Field(
+        default=False,
+        description="Format for generated filenames. False preserves spaces and special chars, True converts them to hyphens for consistency with permalinks",
+    )
+
+    # API connection configuration
+    api_url: Optional[str] = Field(
+        default=None,
+        description="URL of remote Basic Memory API. If set, MCP will connect to this API instead of using local ASGI transport.",
+    )

    model_config = SettingsConfigDict(
        env_prefix="BASIC_MEMORY_",
@@ -35,23 +92,293 @@ class ProjectConfig(BaseSettings):
        env_file_encoding="utf-8",
    )

+    def get_project_path(self, project_name: Optional[str] = None) -> Path:  # pragma: no cover
+        """Get the path for a specific project or the default project."""
+        name = project_name or self.default_project
+
+        if name not in self.projects:
+            raise ValueError(f"Project '{name}' not found in configuration")
+
+        return Path(self.projects[name])
+
+    def model_post_init(self, __context: Any) -> None:
+        """Ensure configuration is valid after initialization."""
+        # Ensure main project exists
+        if "main" not in self.projects:  # pragma: no cover
+            self.projects["main"] = (
+                Path(os.getenv("BASIC_MEMORY_HOME", Path.home() / "basic-memory"))
+            ).as_posix()
+
+        # Ensure default project is valid
+        if self.default_project not in self.projects:  # pragma: no cover
+            self.default_project = "main"
+
    @property
-    def database_path(self) -> Path:
-        """Get SQLite database path."""
-        database_path = self.home / DATA_DIR_NAME / DATABASE_NAME
-        if not database_path.exists():
+    def app_database_path(self) -> Path:
+        """Get the path to the app-level database.
+
+        This is the single database that will store all knowledge data
+        across all projects.
+        """
+        database_path = Path.home() / DATA_DIR_NAME / APP_DATABASE_NAME
+        if not database_path.exists():  # pragma: no cover
            database_path.parent.mkdir(parents=True, exist_ok=True)
            database_path.touch()
        return database_path

-    @field_validator("home")
+    @property
+    def database_path(self) -> Path:
+        """Get SQLite database path.
+
+        Rreturns the app-level database path
+        for backward compatibility in the codebase.
+        """
+
+        # Load the app-level database path from the global config
+        config_manager = ConfigManager()
+        config = config_manager.load_config()  # pragma: no cover
+        return config.app_database_path  # pragma: no cover
+
+    @property
+    def project_list(self) -> List[ProjectConfig]:  # pragma: no cover
+        """Get all configured projects as ProjectConfig objects."""
+        return [ProjectConfig(name=name, home=Path(path)) for name, path in self.projects.items()]
+
+    @field_validator("projects")
    @classmethod
-    def ensure_path_exists(cls, v: Path) -> Path:  # pragma: no cover
+    def ensure_project_paths_exists(cls, v: Dict[str, str]) -> Dict[str, str]:  # pragma: no cover
        """Ensure project path exists."""
-        if not v.exists():
-            v.mkdir(parents=True)
+        for name, path_value in v.items():
+            path = Path(path_value)
+            if not Path(path).exists():
+                try:
+                    path.mkdir(parents=True)
+                except Exception as e:
+                    logger.error(f"Failed to create project path: {e}")
+                    raise e
        return v


-# Load project config
-config = ProjectConfig()
+class ConfigManager:
+    """Manages Basic Memory configuration."""
+
+    def __init__(self) -> None:
+        """Initialize the configuration manager."""
+        home = os.getenv("HOME", Path.home())
+        if isinstance(home, str):
+            home = Path(home)
+
+        self.config_dir = home / DATA_DIR_NAME
+        self.config_file = self.config_dir / CONFIG_FILE_NAME
+
+        # Ensure config directory exists
+        self.config_dir.mkdir(parents=True, exist_ok=True)
+
+    @property
+    def config(self) -> BasicMemoryConfig:
+        """Get configuration, loading it lazily if needed."""
+        return self.load_config()
+
+    def load_config(self) -> BasicMemoryConfig:
+        """Load configuration from file or create default."""
+
+        if self.config_file.exists():
+            try:
+                data = json.loads(self.config_file.read_text(encoding="utf-8"))
+                return BasicMemoryConfig(**data)
+            except Exception as e:  # pragma: no cover
+                logger.exception(f"Failed to load config: {e}")
+                raise e
+        else:
+            config = BasicMemoryConfig()
+            self.save_config(config)
+            return config
+
+    def save_config(self, config: BasicMemoryConfig) -> None:
+        """Save configuration to file."""
+        save_basic_memory_config(self.config_file, config)
+
+    @property
+    def projects(self) -> Dict[str, str]:
+        """Get all configured projects."""
+        return self.config.projects.copy()
+
+    @property
+    def default_project(self) -> str:
+        """Get the default project name."""
+        return self.config.default_project
+
+    def add_project(self, name: str, path: str) -> ProjectConfig:
+        """Add a new project to the configuration."""
+        project_name, _ = self.get_project(name)
+        if project_name:  # pragma: no cover
+            raise ValueError(f"Project '{name}' already exists")
+
+        # Ensure the path exists
+        project_path = Path(path)
+        project_path.mkdir(parents=True, exist_ok=True)  # pragma: no cover
+
+        # Load config, modify it, and save it
+        config = self.load_config()
+        config.projects[name] = project_path.as_posix()
+        self.save_config(config)
+        return ProjectConfig(name=name, home=project_path)
+
+    def remove_project(self, name: str) -> None:
+        """Remove a project from the configuration."""
+
+        project_name, path = self.get_project(name)
+        if not project_name:  # pragma: no cover
+            raise ValueError(f"Project '{name}' not found")
+
+        # Load config, check, modify, and save
+        config = self.load_config()
+        if project_name == config.default_project:  # pragma: no cover
+            raise ValueError(f"Cannot remove the default project '{name}'")
+
+        del config.projects[name]
+        self.save_config(config)
+
+    def set_default_project(self, name: str) -> None:
+        """Set the default project."""
+        project_name, path = self.get_project(name)
+        if not project_name:  # pragma: no cover
+            raise ValueError(f"Project '{name}' not found")
+
+        # Load config, modify, and save
+        config = self.load_config()
+        config.default_project = project_name
+        self.save_config(config)
+
+    def get_project(self, name: str) -> Tuple[str, str] | Tuple[None, None]:
+        """Look up a project from the configuration by name or permalink"""
+        project_permalink = generate_permalink(name)
+        app_config = self.config
+        for project_name, path in app_config.projects.items():
+            if project_permalink == generate_permalink(project_name):
+                return project_name, path
+        return None, None
+
+
+def get_project_config(project_name: Optional[str] = None) -> ProjectConfig:
+    """
+    Get the project configuration for the current session.
+    If project_name is provided, it will be used instead of the default project.
+    """
+
+    actual_project_name = None
+
+    # load the config from file
+    config_manager = ConfigManager()
+    app_config = config_manager.load_config()
+
+    # Get project name from environment variable
+    os_project_name = os.environ.get("BASIC_MEMORY_PROJECT", None)
+    if os_project_name:  # pragma: no cover
+        logger.warning(
+            f"BASIC_MEMORY_PROJECT is not supported anymore. Use the --project flag or set the default project in the config instead. Setting default project to {os_project_name}"
+        )
+        actual_project_name = project_name
+    # if the project_name is passed in, use it
+    elif not project_name:
+        # use default
+        actual_project_name = app_config.default_project
+    else:  # pragma: no cover
+        actual_project_name = project_name
+
+    # the config contains a dict[str,str] of project names and absolute paths
+    assert actual_project_name is not None, "actual_project_name cannot be None"
+
+    project_permalink = generate_permalink(actual_project_name)
+
+    for name, path in app_config.projects.items():
+        if project_permalink == generate_permalink(name):
+            return ProjectConfig(name=name, home=Path(path))
+
+    # otherwise raise error
+    raise ValueError(f"Project '{actual_project_name}' not found")  # pragma: no cover
+
+
+def save_basic_memory_config(file_path: Path, config: BasicMemoryConfig) -> None:
+    """Save configuration to file."""
+    try:
+        file_path.write_text(json.dumps(config.model_dump(), indent=2))
+    except Exception as e:  # pragma: no cover
+        logger.error(f"Failed to save config: {e}")
+
+
+def update_current_project(project_name: str) -> None:
+    """Update the global config to use a different project.
+
+    This is used by the CLI when --project flag is specified.
+    """
+    global config
+    config = get_project_config(project_name)  # pragma: no cover
+
+
+# setup logging to a single log file in user home directory
+user_home = Path.home()
+log_dir = user_home / DATA_DIR_NAME
+log_dir.mkdir(parents=True, exist_ok=True)
+
+
+# Process info for logging
+def get_process_name():  # pragma: no cover
+    """
+    get the type of process for logging
+    """
+    import sys
+
+    if "sync" in sys.argv:
+        return "sync"
+    elif "mcp" in sys.argv:
+        return "mcp"
+    elif "cli" in sys.argv:
+        return "cli"
+    else:
+        return "api"
+
+
+process_name = get_process_name()
+
+# Global flag to track if logging has been set up
+_LOGGING_SETUP = False
+
+
+# Logging
+
+
+def setup_basic_memory_logging():  # pragma: no cover
+    """Set up logging for basic-memory, ensuring it only happens once."""
+    global _LOGGING_SETUP
+    if _LOGGING_SETUP:
+        # We can't log before logging is set up
+        # print("Skipping duplicate logging setup")
+        return
+
+    # Check for console logging environment variable - accept more truthy values
+    console_logging_env = os.getenv("BASIC_MEMORY_CONSOLE_LOGGING", "false").lower()
+    console_logging = console_logging_env in ("true", "1", "yes", "on")
+
+    # Check for log level environment variable first, fall back to config
+    log_level = os.getenv("BASIC_MEMORY_LOG_LEVEL")
+    if not log_level:
+        config_manager = ConfigManager()
+        log_level = config_manager.config.log_level
+
+    config_manager = ConfigManager()
+    config = get_project_config()
+    setup_logging(
+        env=config_manager.config.env,
+        home_dir=user_home,  # Use user home for logs
+        log_level=log_level,
+        log_file=f"{DATA_DIR_NAME}/basic-memory-{process_name}.log",
+        console=console_logging,
+    )
+
+    logger.info(f"Basic Memory {basic_memory.__version__} (Project: {config.project})")
+    _LOGGING_SETUP = True
+
+
+# Set up logging
+setup_basic_memory_logging()
@@ -4,6 +4,10 @@ from enum import Enum, auto
 from pathlib import Path
 from typing import AsyncGenerator, Optional

+from basic_memory.config import BasicMemoryConfig, ConfigManager
+from alembic import command
+from alembic.config import Config
+
 from loguru import logger
 from sqlalchemy import text
 from sqlalchemy.ext.asyncio import (
@@ -14,12 +18,12 @@ from sqlalchemy.ext.asyncio import (
    async_scoped_session,
 )

-from basic_memory.models import Base
-from basic_memory.models.search import CREATE_SEARCH_INDEX
+from basic_memory.repository.search_repository import SearchRepository

 # Module level state
 _engine: Optional[AsyncEngine] = None
 _session_maker: Optional[async_sessionmaker[AsyncSession]] = None
+_migrations_completed: bool = False


 class DatabaseType(Enum):
@@ -35,7 +39,7 @@ class DatabaseType(Enum):
            logger.info("Using in-memory SQLite database")
            return "sqlite+aiosqlite://"

-        return f"sqlite+aiosqlite:///{db_path}"
+        return f"sqlite+aiosqlite:///{db_path}"  # pragma: no cover


 def get_scoped_session_factory(
@@ -69,60 +73,61 @@ async def scoped_session(
        await factory.remove()


-async def init_db() -> None:
-    """Initialize database with required tables."""
-    if _session_maker is None:  # pragma: no cover
-        raise RuntimeError("Database session maker not initialized")
-
-    logger.info("Initializing database...")
-
-    async with scoped_session(_session_maker) as session:
-        await session.execute(text("PRAGMA foreign_keys=ON"))
-        conn = await session.connection()
-        await conn.run_sync(Base.metadata.create_all)
-
-        # recreate search index
-        await session.execute(CREATE_SEARCH_INDEX)
-
-        await session.commit()
+def _create_engine_and_session(
+    db_path: Path, db_type: DatabaseType = DatabaseType.FILESYSTEM
+) -> tuple[AsyncEngine, async_sessionmaker[AsyncSession]]:
+    """Internal helper to create engine and session maker."""
+    db_url = DatabaseType.get_db_url(db_path, db_type)
+    logger.debug(f"Creating engine for db_url: {db_url}")
+    engine = create_async_engine(db_url, connect_args={"check_same_thread": False})
+    session_maker = async_sessionmaker(engine, expire_on_commit=False)
+    return engine, session_maker


 async def get_or_create_db(
    db_path: Path,
    db_type: DatabaseType = DatabaseType.FILESYSTEM,
+    ensure_migrations: bool = True,
 ) -> tuple[AsyncEngine, async_sessionmaker[AsyncSession]]:  # pragma: no cover
    """Get or create database engine and session maker."""
    global _engine, _session_maker

    if _engine is None:
-        db_url = DatabaseType.get_db_url(db_path, db_type)
-        logger.debug(f"Creating engine for db_url: {db_url}")
-        _engine = create_async_engine(db_url, connect_args={"check_same_thread": False})
-        _session_maker = async_sessionmaker(_engine, expire_on_commit=False)
+        _engine, _session_maker = _create_engine_and_session(db_path, db_type)

-        # Initialize database
-        await init_db()
+        # Run migrations automatically unless explicitly disabled
+        if ensure_migrations:
+            app_config = ConfigManager().config
+            await run_migrations(app_config, db_type)
+
+    # These checks should never fail since we just created the engine and session maker
+    # if they were None, but we'll check anyway for the type checker
+    if _engine is None:
+        logger.error("Failed to create database engine", db_path=str(db_path))
+        raise RuntimeError("Database engine initialization failed")
+
+    if _session_maker is None:
+        logger.error("Failed to create session maker", db_path=str(db_path))
+        raise RuntimeError("Session maker initialization failed")

-    assert _engine is not None  # for type checker
-    assert _session_maker is not None  # for type checker
    return _engine, _session_maker


 async def shutdown_db() -> None:  # pragma: no cover
    """Clean up database connections."""
-    global _engine, _session_maker
+    global _engine, _session_maker, _migrations_completed

    if _engine:
        await _engine.dispose()
        _engine = None
        _session_maker = None
+        _migrations_completed = False


@asynccontextmanager
 async def engine_session_factory(
    db_path: Path,
    db_type: DatabaseType = DatabaseType.MEMORY,
-    init: bool = True,
 ) -> AsyncGenerator[tuple[AsyncEngine, async_sessionmaker[AsyncSession]], None]:
    """Create engine and session factory.

@@ -130,7 +135,7 @@ async def engine_session_factory(
    for each test. For production use, use get_or_create_db() instead.
    """

-    global _engine, _session_maker
+    global _engine, _session_maker, _migrations_completed

    db_url = DatabaseType.get_db_url(db_path, db_type)
    logger.debug(f"Creating engine for db_url: {db_url}")
@@ -139,14 +144,68 @@ async def engine_session_factory(
    try:
        _session_maker = async_sessionmaker(_engine, expire_on_commit=False)

-        if init:
-            await init_db()
+        # Verify that engine and session maker are initialized
+        if _engine is None:  # pragma: no cover
+            logger.error("Database engine is None in engine_session_factory")
+            raise RuntimeError("Database engine initialization failed")
+
+        if _session_maker is None:  # pragma: no cover
+            logger.error("Session maker is None in engine_session_factory")
+            raise RuntimeError("Session maker initialization failed")

-        assert _engine is not None  # for type checker
-        assert _session_maker is not None  # for type checker
        yield _engine, _session_maker
    finally:
        if _engine:
            await _engine.dispose()
            _engine = None
            _session_maker = None
+            _migrations_completed = False
+
+
+async def run_migrations(
+    app_config: BasicMemoryConfig, database_type=DatabaseType.FILESYSTEM, force: bool = False
+):  # pragma: no cover
+    """Run any pending alembic migrations."""
+    global _migrations_completed
+
+    # Skip if migrations already completed unless forced
+    if _migrations_completed and not force:
+        logger.debug("Migrations already completed in this session, skipping")
+        return
+
+    logger.info("Running database migrations...")
+    try:
+        # Get the absolute path to the alembic directory relative to this file
+        alembic_dir = Path(__file__).parent / "alembic"
+        config = Config()
+
+        # Set required Alembic config options programmatically
+        config.set_main_option("script_location", str(alembic_dir))
+        config.set_main_option(
+            "file_template",
+            "%%(year)d_%%(month).2d_%%(day).2d_%%(hour).2d%%(minute).2d-%%(rev)s_%%(slug)s",
+        )
+        config.set_main_option("timezone", "UTC")
+        config.set_main_option("revision_environment", "false")
+        config.set_main_option(
+            "sqlalchemy.url", DatabaseType.get_db_url(app_config.database_path, database_type)
+        )
+
+        command.upgrade(config, "head")
+        logger.info("Migrations completed successfully")
+
+        # Get session maker - ensure we don't trigger recursive migration calls
+        if _session_maker is None:
+            _, session_maker = _create_engine_and_session(app_config.database_path, database_type)
+        else:
+            session_maker = _session_maker
+
+        # initialize the search Index schema
+        # the project_id is not used for init_search_index, so we pass a dummy value
+        await SearchRepository(session_maker, 1).init_search_index()
+
+        # Mark migrations as completed
+        _migrations_completed = True
+    except Exception as e:  # pragma: no cover
+        logger.error(f"Error running migrations: {e}")
+        raise
@@ -1,49 +1,88 @@
 """Dependency injection functions for basic-memory services."""

 from typing import Annotated
+from loguru import logger

-from fastapi import Depends
+from fastapi import Depends, HTTPException, Path, status
 from sqlalchemy.ext.asyncio import (
    AsyncSession,
    AsyncEngine,
    async_sessionmaker,
 )
+import pathlib

 from basic_memory import db
-from basic_memory.config import ProjectConfig, config
+from basic_memory.config import ProjectConfig, BasicMemoryConfig, ConfigManager
+from basic_memory.importers import (
+    ChatGPTImporter,
+    ClaudeConversationsImporter,
+    ClaudeProjectsImporter,
+    MemoryJsonImporter,
+)
 from basic_memory.markdown import EntityParser
 from basic_memory.markdown.markdown_processor import MarkdownProcessor
 from basic_memory.repository.entity_repository import EntityRepository
 from basic_memory.repository.observation_repository import ObservationRepository
+from basic_memory.repository.project_repository import ProjectRepository
 from basic_memory.repository.relation_repository import RelationRepository
 from basic_memory.repository.search_repository import SearchRepository
-from basic_memory.services import (
-    EntityService,
-)
+from basic_memory.services import EntityService, ProjectService
 from basic_memory.services.context_service import ContextService
+from basic_memory.services.directory_service import DirectoryService
 from basic_memory.services.file_service import FileService
 from basic_memory.services.link_resolver import LinkResolver
 from basic_memory.services.search_service import SearchService
+from basic_memory.sync import SyncService
+
+
+def get_app_config() -> BasicMemoryConfig:  # pragma: no cover
+    app_config = ConfigManager().config
+    return app_config
+
+
+AppConfigDep = Annotated[BasicMemoryConfig, Depends(get_app_config)]  # pragma: no cover


 ## project


-def get_project_config() -> ProjectConfig:  # pragma: no cover
-    return config
+async def get_project_config(
+    project: "ProjectPathDep", project_repository: "ProjectRepositoryDep"
+) -> ProjectConfig:  # pragma: no cover
+    """Get the current project referenced from request state.
+
+    Args:
+        request: The current request object
+        project_repository: Repository for project operations
+
+    Returns:
+        The resolved project config
+
+    Raises:
+        HTTPException: If project is not found
+    """
+
+    project_obj = await project_repository.get_by_permalink(str(project))
+    if project_obj:
+        return ProjectConfig(name=project_obj.name, home=pathlib.Path(project_obj.path))
+
+    # Not found
+    raise HTTPException(  # pragma: no cover
+        status_code=status.HTTP_404_NOT_FOUND, detail=f"Project '{project}' not found."
+    )


 ProjectConfigDep = Annotated[ProjectConfig, Depends(get_project_config)]  # pragma: no cover

-
 ## sqlalchemy


 async def get_engine_factory(
-    project_config: ProjectConfigDep,
+    app_config: AppConfigDep,
 ) -> tuple[AsyncEngine, async_sessionmaker[AsyncSession]]:  # pragma: no cover
    """Get engine and session maker."""
-    return await db.get_or_create_db(project_config.database_path)
+    engine, session_maker = await db.get_or_create_db(app_config.database_path)
+    return engine, session_maker


 EngineFactoryDep = Annotated[
@@ -63,11 +102,70 @@ SessionMakerDep = Annotated[async_sessionmaker, Depends(get_session_maker)]
 ## repositories


+async def get_project_repository(
+    session_maker: SessionMakerDep,
+) -> ProjectRepository:
+    """Get the project repository."""
+    return ProjectRepository(session_maker)
+
+
+ProjectRepositoryDep = Annotated[ProjectRepository, Depends(get_project_repository)]
+ProjectPathDep = Annotated[str, Path()]  # Use Path dependency to extract from URL
+
+
+async def get_project_id(
+    project_repository: ProjectRepositoryDep,
+    project: ProjectPathDep,
+) -> int:
+    """Get the current project ID from request state.
+
+    When using sub-applications with /{project} mounting, the project value
+    is stored in request.state by middleware.
+
+    Args:
+        request: The current request object
+        project_repository: Repository for project operations
+
+    Returns:
+        The resolved project ID
+
+    Raises:
+        HTTPException: If project is not found
+    """
+
+    # Try by permalink first (most common case with URL paths)
+    project_obj = await project_repository.get_by_permalink(str(project))
+    if project_obj:
+        return project_obj.id
+
+    # Try by name if permalink lookup fails
+    project_obj = await project_repository.get_by_name(str(project))  # pragma: no cover
+    if project_obj:  # pragma: no cover
+        return project_obj.id
+
+    # Not found
+    raise HTTPException(  # pragma: no cover
+        status_code=status.HTTP_404_NOT_FOUND, detail=f"Project '{project}' not found."
+    )
+
+
+"""
+The project_id dependency is used in the following:
+- EntityRepository
+- ObservationRepository
+- RelationRepository
+- SearchRepository
+- ProjectInfoRepository
+"""
+ProjectIdDep = Annotated[int, Depends(get_project_id)]
+
+
 async def get_entity_repository(
    session_maker: SessionMakerDep,
+    project_id: ProjectIdDep,
 ) -> EntityRepository:
-    """Create an EntityRepository instance."""
-    return EntityRepository(session_maker)
+    """Create an EntityRepository instance for the current project."""
+    return EntityRepository(session_maker, project_id=project_id)


 EntityRepositoryDep = Annotated[EntityRepository, Depends(get_entity_repository)]
@@ -75,9 +173,10 @@ EntityRepositoryDep = Annotated[EntityRepository, Depends(get_entity_repository)

 async def get_observation_repository(
    session_maker: SessionMakerDep,
+    project_id: ProjectIdDep,
 ) -> ObservationRepository:
-    """Create an ObservationRepository instance."""
-    return ObservationRepository(session_maker)
+    """Create an ObservationRepository instance for the current project."""
+    return ObservationRepository(session_maker, project_id=project_id)


 ObservationRepositoryDep = Annotated[ObservationRepository, Depends(get_observation_repository)]
@@ -85,9 +184,10 @@ ObservationRepositoryDep = Annotated[ObservationRepository, Depends(get_observat

 async def get_relation_repository(
    session_maker: SessionMakerDep,
+    project_id: ProjectIdDep,
 ) -> RelationRepository:
-    """Create a RelationRepository instance."""
-    return RelationRepository(session_maker)
+    """Create a RelationRepository instance for the current project."""
+    return RelationRepository(session_maker, project_id=project_id)


 RelationRepositoryDep = Annotated[RelationRepository, Depends(get_relation_repository)]
@@ -95,14 +195,18 @@ RelationRepositoryDep = Annotated[RelationRepository, Depends(get_relation_repos

 async def get_search_repository(
    session_maker: SessionMakerDep,
+    project_id: ProjectIdDep,
 ) -> SearchRepository:
-    """Create a SearchRepository instance."""
-    return SearchRepository(session_maker)
+    """Create a SearchRepository instance for the current project."""
+    return SearchRepository(session_maker, project_id=project_id)


 SearchRepositoryDep = Annotated[SearchRepository, Depends(get_search_repository)]


+# ProjectInfoRepository is deprecated and will be removed in a future version.
+# Use ProjectRepository instead, which has the same functionality plus more project-specific operations.
+
 ## services


@@ -123,7 +227,12 @@ MarkdownProcessorDep = Annotated[MarkdownProcessor, Depends(get_markdown_process
 async def get_file_service(
    project_config: ProjectConfigDep, markdown_processor: MarkdownProcessorDep
 ) -> FileService:
-    return FileService(project_config.home, markdown_processor)
+    logger.debug(
+        f"Creating FileService for project: {project_config.name}, base_path: {project_config.home}"
+    )
+    file_service = FileService(project_config.home, markdown_processor)
+    logger.debug(f"Created FileService for project: {file_service} ")
+    return file_service


 FileServiceDep = Annotated[FileService, Depends(get_file_service)]
@@ -173,9 +282,109 @@ LinkResolverDep = Annotated[LinkResolver, Depends(get_link_resolver)]


 async def get_context_service(
-    search_repository: SearchRepositoryDep, entity_repository: EntityRepositoryDep
+    search_repository: SearchRepositoryDep,
+    entity_repository: EntityRepositoryDep,
+    observation_repository: ObservationRepositoryDep,
 ) -> ContextService:
-    return ContextService(search_repository, entity_repository)
+    return ContextService(
+        search_repository=search_repository,
+        entity_repository=entity_repository,
+        observation_repository=observation_repository,
+    )


 ContextServiceDep = Annotated[ContextService, Depends(get_context_service)]
+
+
+async def get_sync_service(
+    app_config: AppConfigDep,
+    entity_service: EntityServiceDep,
+    entity_parser: EntityParserDep,
+    entity_repository: EntityRepositoryDep,
+    relation_repository: RelationRepositoryDep,
+    search_service: SearchServiceDep,
+    file_service: FileServiceDep,
+) -> SyncService:  # pragma: no cover
+    """
+
+    :rtype: object
+    """
+    return SyncService(
+        app_config=app_config,
+        entity_service=entity_service,
+        entity_parser=entity_parser,
+        entity_repository=entity_repository,
+        relation_repository=relation_repository,
+        search_service=search_service,
+        file_service=file_service,
+    )
+
+
+SyncServiceDep = Annotated[SyncService, Depends(get_sync_service)]
+
+
+async def get_project_service(
+    project_repository: ProjectRepositoryDep,
+) -> ProjectService:
+    """Create ProjectService with repository."""
+    return ProjectService(repository=project_repository)
+
+
+ProjectServiceDep = Annotated[ProjectService, Depends(get_project_service)]
+
+
+async def get_directory_service(
+    entity_repository: EntityRepositoryDep,
+) -> DirectoryService:
+    """Create DirectoryService with dependencies."""
+    return DirectoryService(
+        entity_repository=entity_repository,
+    )
+
+
+DirectoryServiceDep = Annotated[DirectoryService, Depends(get_directory_service)]
+
+
+# Import
+
+
+async def get_chatgpt_importer(
+    project_config: ProjectConfigDep, markdown_processor: MarkdownProcessorDep
+) -> ChatGPTImporter:
+    """Create ChatGPTImporter with dependencies."""
+    return ChatGPTImporter(project_config.home, markdown_processor)
+
+
+ChatGPTImporterDep = Annotated[ChatGPTImporter, Depends(get_chatgpt_importer)]
+
+
+async def get_claude_conversations_importer(
+    project_config: ProjectConfigDep, markdown_processor: MarkdownProcessorDep
+) -> ClaudeConversationsImporter:
+    """Create ChatGPTImporter with dependencies."""
+    return ClaudeConversationsImporter(project_config.home, markdown_processor)
+
+
+ClaudeConversationsImporterDep = Annotated[
+    ClaudeConversationsImporter, Depends(get_claude_conversations_importer)
+]
+
+
+async def get_claude_projects_importer(
+    project_config: ProjectConfigDep, markdown_processor: MarkdownProcessorDep
+) -> ClaudeProjectsImporter:
+    """Create ChatGPTImporter with dependencies."""
+    return ClaudeProjectsImporter(project_config.home, markdown_processor)
+
+
+ClaudeProjectsImporterDep = Annotated[ClaudeProjectsImporter, Depends(get_claude_projects_importer)]
+
+
+async def get_memory_json_importer(
+    project_config: ProjectConfigDep, markdown_processor: MarkdownProcessorDep
+) -> MemoryJsonImporter:
+    """Create ChatGPTImporter with dependencies."""
+    return MemoryJsonImporter(project_config.home, markdown_processor)
+
+
+MemoryJsonImporterDep = Annotated[MemoryJsonImporter, Depends(get_memory_json_importer)]
@@ -2,11 +2,15 @@

 import hashlib
 from pathlib import Path
-from typing import Dict, Any
+import re
+from typing import Any, Dict, Union

 import yaml
+import frontmatter
 from loguru import logger

+from basic_memory.utils import FilePath
+

 class FileError(Exception):
    """Base exception for file operations."""
@@ -26,12 +30,12 @@ class ParseError(FileError):
    pass


-async def compute_checksum(content: str) -> str:
+async def compute_checksum(content: Union[str, bytes]) -> str:
    """
    Compute SHA-256 checksum of content.

    Args:
-        content: Text content to hash
+        content: Content to hash (either text string or bytes)

    Returns:
        SHA-256 hex digest
@@ -40,48 +44,55 @@ async def compute_checksum(content: str) -> str:
        FileError: If checksum computation fails
    """
    try:
-        return hashlib.sha256(content.encode()).hexdigest()
+        if isinstance(content, str):
+            content = content.encode()
+        return hashlib.sha256(content).hexdigest()
    except Exception as e:  # pragma: no cover
        logger.error(f"Failed to compute checksum: {e}")
        raise FileError(f"Failed to compute checksum: {e}")


-async def ensure_directory(path: Path) -> None:
+async def ensure_directory(path: FilePath) -> None:
    """
    Ensure directory exists, creating if necessary.

    Args:
-        path: Directory path to ensure
+        path: Directory path to ensure (Path or string)

    Raises:
        FileWriteError: If directory creation fails
    """
    try:
-        path.mkdir(parents=True, exist_ok=True)
+        # Convert string to Path if needed
+        path_obj = Path(path) if isinstance(path, str) else path
+        path_obj.mkdir(parents=True, exist_ok=True)
    except Exception as e:  # pragma: no cover
-        logger.error(f"Failed to create directory: {path}: {e}")
+        logger.error("Failed to create directory", path=str(path), error=str(e))
        raise FileWriteError(f"Failed to create directory {path}: {e}")


-async def write_file_atomic(path: Path, content: str) -> None:
+async def write_file_atomic(path: FilePath, content: str) -> None:
    """
    Write file with atomic operation using temporary file.

    Args:
-        path: Target file path
+        path: Target file path (Path or string)
        content: Content to write

    Raises:
        FileWriteError: If write operation fails
    """
-    temp_path = path.with_suffix(".tmp")
+    # Convert string to Path if needed
+    path_obj = Path(path) if isinstance(path, str) else path
+    temp_path = path_obj.with_suffix(".tmp")
+
    try:
-        temp_path.write_text(content)
-        temp_path.replace(path)
-        logger.debug(f"wrote file: {path}")
+        temp_path.write_text(content, encoding="utf-8")
+        temp_path.replace(path_obj)
+        logger.debug("Wrote file atomically", path=str(path_obj), content_length=len(content))
    except Exception as e:  # pragma: no cover
        temp_path.unlink(missing_ok=True)
-        logger.error(f"Failed to write file: {path}: {e}")
+        logger.error("Failed to write file", path=str(path_obj), error=str(e))
        raise FileWriteError(f"Failed to write file {path}: {e}")


@@ -95,6 +106,9 @@ def has_frontmatter(content: str) -> bool:
    Returns:
        True if content has valid frontmatter markers (---), False otherwise
    """
+    if not content:
+        return False
+
    content = content.strip()
    if not content.startswith("---"):
        return False
@@ -171,7 +185,7 @@ def remove_frontmatter(content: str) -> str:
    return parts[2].strip()


-async def update_frontmatter(path: Path, updates: Dict[str, Any]) -> str:
+async def update_frontmatter(path: FilePath, updates: Dict[str, Any]) -> str:
    """Update frontmatter fields in a file while preserving all content.

    Only modifies the frontmatter section, leaving all content untouched.
@@ -179,7 +193,7 @@ async def update_frontmatter(path: Path, updates: Dict[str, Any]) -> str:
    Returns checksum of updated file.

    Args:
-        path: Path to markdown file
+        path: Path to markdown file (Path or string)
        updates: Dict of frontmatter fields to update

    Returns:
@@ -190,8 +204,11 @@ async def update_frontmatter(path: Path, updates: Dict[str, Any]) -> str:
        ParseError: If frontmatter parsing fails
    """
    try:
+        # Convert string to Path if needed
+        path_obj = Path(path) if isinstance(path, str) else path
+
        # Read current content
-        content = path.read_text()
+        content = path_obj.read_text(encoding="utf-8")

        # Parse current frontmatter
        current_fm = {}
@@ -203,12 +220,81 @@ async def update_frontmatter(path: Path, updates: Dict[str, Any]) -> str:
        new_fm = {**current_fm, **updates}

        # Write new file with updated frontmatter
-        yaml_fm = yaml.dump(new_fm, sort_keys=False)
+        yaml_fm = yaml.dump(new_fm, sort_keys=False, allow_unicode=True)
        final_content = f"---\n{yaml_fm}---\n\n{content.strip()}"

-        await write_file_atomic(path, final_content)
+        logger.debug("Updating frontmatter", path=str(path_obj), update_keys=list(updates.keys()))
+
+        await write_file_atomic(path_obj, final_content)
        return await compute_checksum(final_content)

    except Exception as e:  # pragma: no cover
-        logger.error(f"Failed to update frontmatter in {path}: {e}")
+        logger.error(
+            "Failed to update frontmatter",
+            path=str(path) if isinstance(path, (str, Path)) else "<unknown>",
+            error=str(e),
+        )
        raise FileError(f"Failed to update frontmatter: {e}")
+
+
+def dump_frontmatter(post: frontmatter.Post) -> str:
+    """
+    Serialize frontmatter.Post to markdown with Obsidian-compatible YAML format.
+    
+    This function ensures that tags are formatted as YAML lists instead of JSON arrays:
+    
+    Good (Obsidian compatible):
+    ---
+    tags:
+    - system
+    - overview  
+    - reference
+    ---
+    
+    Bad (current behavior):
+    ---
+    tags: ["system", "overview", "reference"]
+    ---
+    
+    Args:
+        post: frontmatter.Post object to serialize
+        
+    Returns:
+        String containing markdown with properly formatted YAML frontmatter
+    """    
+    if not post.metadata:
+        # No frontmatter, just return content
+        return post.content
+        
+    # Serialize YAML with block style for lists
+    yaml_str = yaml.dump(
+        post.metadata,
+        sort_keys=False,
+        allow_unicode=True,
+        default_flow_style=False
+    )
+    
+    # Construct the final markdown with frontmatter
+    if post.content:
+        return f"---\n{yaml_str}---\n\n{post.content}"
+    else:
+        return f"---\n{yaml_str}---\n"
+
+
+def sanitize_for_filename(text: str, replacement: str = "-") -> str:
+    """
+    Sanitize string to be safe for use as a note title
+    Replaces path separators and other problematic characters
+    with hyphens.
+    """
+    # replace both POSIX and Windows path separators
+    text = re.sub(r"[/\\]", replacement, text)
+
+    # replace some other problematic chars
+    text = re.sub(r'[<>:"|?*]', replacement, text)
+
+    # compress multiple, repeated replacements
+    text = re.sub(f"{re.escape(replacement)}+", replacement, text)
+
+    return text.strip(replacement)
+
@@ -0,0 +1,27 @@
+"""Import services for Basic Memory."""
+
+from basic_memory.importers.base import Importer
+from basic_memory.importers.chatgpt_importer import ChatGPTImporter
+from basic_memory.importers.claude_conversations_importer import (
+    ClaudeConversationsImporter,
+)
+from basic_memory.importers.claude_projects_importer import ClaudeProjectsImporter
+from basic_memory.importers.memory_json_importer import MemoryJsonImporter
+from basic_memory.schemas.importer import (
+    ChatImportResult,
+    EntityImportResult,
+    ImportResult,
+    ProjectImportResult,
+)
+
+__all__ = [
+    "Importer",
+    "ChatGPTImporter",
+    "ClaudeConversationsImporter",
+    "ClaudeProjectsImporter",
+    "MemoryJsonImporter",
+    "ImportResult",
+    "ChatImportResult",
+    "EntityImportResult",
+    "ProjectImportResult",
+]
@@ -0,0 +1,79 @@
+"""Base import service for Basic Memory."""
+
+import logging
+from abc import abstractmethod
+from pathlib import Path
+from typing import Any, Optional, TypeVar
+
+from basic_memory.markdown.markdown_processor import MarkdownProcessor
+from basic_memory.markdown.schemas import EntityMarkdown
+from basic_memory.schemas.importer import ImportResult
+
+logger = logging.getLogger(__name__)
+
+T = TypeVar("T", bound=ImportResult)
+
+
+class Importer[T: ImportResult]:
+    """Base class for all import services."""
+
+    def __init__(self, base_path: Path, markdown_processor: MarkdownProcessor):
+        """Initialize the import service.
+
+        Args:
+            markdown_processor: MarkdownProcessor instance for writing markdown files.
+        """
+        self.base_path = base_path.resolve()  # Get absolute path
+        self.markdown_processor = markdown_processor
+
+    @abstractmethod
+    async def import_data(self, source_data, destination_folder: str, **kwargs: Any) -> T:
+        """Import data from source file to destination folder.
+
+        Args:
+            source_path: Path to the source file.
+            destination_folder: Destination folder within the project.
+            **kwargs: Additional keyword arguments for specific import types.
+
+        Returns:
+            ImportResult containing statistics and status of the import.
+        """
+        pass  # pragma: no cover
+
+    async def write_entity(self, entity: EntityMarkdown, file_path: Path) -> None:
+        """Write entity to file using markdown processor.
+
+        Args:
+            entity: EntityMarkdown instance to write.
+            file_path: Path to write the entity to.
+        """
+        await self.markdown_processor.write_file(file_path, entity)
+
+    def ensure_folder_exists(self, folder: str) -> Path:
+        """Ensure folder exists, create if it doesn't.
+
+        Args:
+            base_path: Base path of the project.
+            folder: Folder name or path within the project.
+
+        Returns:
+            Path to the folder.
+        """
+        folder_path = self.base_path / folder
+        folder_path.mkdir(parents=True, exist_ok=True)
+        return folder_path
+
+    @abstractmethod
+    def handle_error(
+        self, message: str, error: Optional[Exception] = None
+    ) -> T:  # pragma: no cover
+        """Handle errors during import.
+
+        Args:
+            message: Error message.
+            error: Optional exception that caused the error.
+
+        Returns:
+            ImportResult with error information.
+        """
+        pass
@@ -0,0 +1,232 @@
+"""ChatGPT import service for Basic Memory."""
+
+import logging
+from datetime import datetime
+from typing import Any, Dict, List, Optional, Set
+
+from basic_memory.markdown.schemas import EntityFrontmatter, EntityMarkdown
+from basic_memory.importers.base import Importer
+from basic_memory.schemas.importer import ChatImportResult
+from basic_memory.importers.utils import clean_filename, format_timestamp
+
+logger = logging.getLogger(__name__)
+
+
+class ChatGPTImporter(Importer[ChatImportResult]):
+    """Service for importing ChatGPT conversations."""
+
+    async def import_data(
+        self, source_data, destination_folder: str, **kwargs: Any
+    ) -> ChatImportResult:
+        """Import conversations from ChatGPT JSON export.
+
+        Args:
+            source_path: Path to the ChatGPT conversations.json file.
+            destination_folder: Destination folder within the project.
+            **kwargs: Additional keyword arguments.
+
+        Returns:
+            ChatImportResult containing statistics and status of the import.
+        """
+        try:  # pragma: no cover
+            # Ensure the destination folder exists
+            self.ensure_folder_exists(destination_folder)
+            conversations = source_data
+
+            # Process each conversation
+            messages_imported = 0
+            chats_imported = 0
+
+            for chat in conversations:
+                # Convert to entity
+                entity = self._format_chat_content(destination_folder, chat)
+
+                # Write file
+                file_path = self.base_path / f"{entity.frontmatter.metadata['permalink']}.md"
+                await self.write_entity(entity, file_path)
+
+                # Count messages
+                msg_count = sum(
+                    1
+                    for node in chat["mapping"].values()
+                    if node.get("message")
+                    and not node.get("message", {})
+                    .get("metadata", {})
+                    .get("is_visually_hidden_from_conversation")
+                )
+
+                chats_imported += 1
+                messages_imported += msg_count
+
+            return ChatImportResult(
+                import_count={"conversations": chats_imported, "messages": messages_imported},
+                success=True,
+                conversations=chats_imported,
+                messages=messages_imported,
+            )
+
+        except Exception as e:  # pragma: no cover
+            logger.exception("Failed to import ChatGPT conversations")
+            return self.handle_error("Failed to import ChatGPT conversations", e)  # pyright: ignore [reportReturnType]
+
+    def _format_chat_content(
+        self, folder: str, conversation: Dict[str, Any]
+    ) -> EntityMarkdown:  # pragma: no cover
+        """Convert chat conversation to Basic Memory entity.
+
+        Args:
+            folder: Destination folder name.
+            conversation: ChatGPT conversation data.
+
+        Returns:
+            EntityMarkdown instance representing the conversation.
+        """
+        # Extract timestamps
+        created_at = conversation["create_time"]
+        modified_at = conversation["update_time"]
+
+        root_id = None
+        # Find root message
+        for node_id, node in conversation["mapping"].items():
+            if node.get("parent") is None:
+                root_id = node_id
+                break
+
+        # Generate permalink
+        date_prefix = datetime.fromtimestamp(created_at).astimezone().strftime("%Y%m%d")
+        clean_title = clean_filename(conversation["title"])
+
+        # Format content
+        content = self._format_chat_markdown(
+            title=conversation["title"],
+            mapping=conversation["mapping"],
+            root_id=root_id,
+            created_at=created_at,
+            modified_at=modified_at,
+        )
+
+        # Create entity
+        entity = EntityMarkdown(
+            frontmatter=EntityFrontmatter(
+                metadata={
+                    "type": "conversation",
+                    "title": conversation["title"],
+                    "created": format_timestamp(created_at),
+                    "modified": format_timestamp(modified_at),
+                    "permalink": f"{folder}/{date_prefix}-{clean_title}",
+                }
+            ),
+            content=content,
+        )
+
+        return entity
+
+    def _format_chat_markdown(
+        self,
+        title: str,
+        mapping: Dict[str, Any],
+        root_id: Optional[str],
+        created_at: float,
+        modified_at: float,
+    ) -> str:  # pragma: no cover
+        """Format chat as clean markdown.
+
+        Args:
+            title: Chat title.
+            mapping: Message mapping.
+            root_id: Root message ID.
+            created_at: Creation timestamp.
+            modified_at: Modification timestamp.
+
+        Returns:
+            Formatted markdown content.
+        """
+        # Start with title
+        lines = [f"# {title}\n"]
+
+        # Traverse message tree
+        seen_msgs: Set[str] = set()
+        messages = self._traverse_messages(mapping, root_id, seen_msgs)
+
+        # Format each message
+        for msg in messages:
+            # Skip hidden messages
+            if msg.get("metadata", {}).get("is_visually_hidden_from_conversation"):
+                continue
+
+            # Get author and timestamp
+            author = msg["author"]["role"].title()
+            ts = format_timestamp(msg["create_time"]) if msg.get("create_time") else ""
+
+            # Add message header
+            lines.append(f"### {author} ({ts})")
+
+            # Add message content
+            content = self._get_message_content(msg)
+            if content:
+                lines.append(content)
+
+            # Add spacing
+            lines.append("")
+
+        return "\n".join(lines)
+
+    def _get_message_content(self, message: Dict[str, Any]) -> str:  # pragma: no cover
+        """Extract clean message content.
+
+        Args:
+            message: Message data.
+
+        Returns:
+            Cleaned message content.
+        """
+        if not message or "content" not in message:
+            return ""
+
+        content = message["content"]
+        if content.get("content_type") == "text":
+            return "\n".join(content.get("parts", []))
+        elif content.get("content_type") == "code":
+            return f"```{content.get('language', '')}\n{content.get('text', '')}\n```"
+        return ""
+
+    def _traverse_messages(
+        self, mapping: Dict[str, Any], root_id: Optional[str], seen: Set[str]
+    ) -> List[Dict[str, Any]]:  # pragma: no cover
+        """Traverse message tree iteratively to handle deep conversations.
+
+        Args:
+            mapping: Message mapping.
+            root_id: Root message ID.
+            seen: Set of seen message IDs.
+
+        Returns:
+            List of message data.
+        """
+        messages = []
+        if not root_id:
+            return messages
+
+        # Use iterative approach with stack to avoid recursion depth issues
+        stack = [root_id]
+
+        while stack:
+            node_id = stack.pop()
+            if not node_id:
+                continue
+
+            node = mapping.get(node_id)
+            if not node:
+                continue
+
+            # Process current node if it has a message and hasn't been seen
+            if node["id"] not in seen and node.get("message"):
+                seen.add(node["id"])
+                messages.append(node["message"])
+
+            # Add children to stack in reverse order to maintain conversation flow
+            children = node.get("children", [])
+            for child_id in reversed(children):
+                stack.append(child_id)
+
+        return messages
@@ -0,0 +1,172 @@
+"""Claude conversations import service for Basic Memory."""
+
+import logging
+from datetime import datetime
+from pathlib import Path
+from typing import Any, Dict, List
+
+from basic_memory.markdown.schemas import EntityFrontmatter, EntityMarkdown
+from basic_memory.importers.base import Importer
+from basic_memory.schemas.importer import ChatImportResult
+from basic_memory.importers.utils import clean_filename, format_timestamp
+
+logger = logging.getLogger(__name__)
+
+
+class ClaudeConversationsImporter(Importer[ChatImportResult]):
+    """Service for importing Claude conversations."""
+
+    async def import_data(
+        self, source_data, destination_folder: str, **kwargs: Any
+    ) -> ChatImportResult:
+        """Import conversations from Claude JSON export.
+
+        Args:
+            source_data: Path to the Claude conversations.json file.
+            destination_folder: Destination folder within the project.
+            **kwargs: Additional keyword arguments.
+
+        Returns:
+            ChatImportResult containing statistics and status of the import.
+        """
+        try:
+            # Ensure the destination folder exists
+            folder_path = self.ensure_folder_exists(destination_folder)
+
+            conversations = source_data
+
+            # Process each conversation
+            messages_imported = 0
+            chats_imported = 0
+
+            for chat in conversations:
+                # Convert to entity
+                entity = self._format_chat_content(
+                    base_path=folder_path,
+                    name=chat["name"],
+                    messages=chat["chat_messages"],
+                    created_at=chat["created_at"],
+                    modified_at=chat["updated_at"],
+                )
+
+                # Write file
+                file_path = self.base_path / Path(f"{entity.frontmatter.metadata['permalink']}.md")
+                await self.write_entity(entity, file_path)
+
+                chats_imported += 1
+                messages_imported += len(chat["chat_messages"])
+
+            return ChatImportResult(
+                import_count={"conversations": chats_imported, "messages": messages_imported},
+                success=True,
+                conversations=chats_imported,
+                messages=messages_imported,
+            )
+
+        except Exception as e:  # pragma: no cover
+            logger.exception("Failed to import Claude conversations")
+            return self.handle_error("Failed to import Claude conversations", e)  # pyright: ignore [reportReturnType]
+
+    def _format_chat_content(
+        self,
+        base_path: Path,
+        name: str,
+        messages: List[Dict[str, Any]],
+        created_at: str,
+        modified_at: str,
+    ) -> EntityMarkdown:
+        """Convert chat messages to Basic Memory entity format.
+
+        Args:
+            base_path: Base path for the entity.
+            name: Chat name.
+            messages: List of chat messages.
+            created_at: Creation timestamp.
+            modified_at: Modification timestamp.
+
+        Returns:
+            EntityMarkdown instance representing the conversation.
+        """
+        # Generate permalink
+        date_prefix = datetime.fromisoformat(created_at.replace("Z", "+00:00")).strftime("%Y%m%d")
+        clean_title = clean_filename(name)
+        permalink = f"{base_path.name}/{date_prefix}-{clean_title}"
+
+        # Format content
+        content = self._format_chat_markdown(
+            name=name,
+            messages=messages,
+            created_at=created_at,
+            modified_at=modified_at,
+            permalink=permalink,
+        )
+
+        # Create entity
+        entity = EntityMarkdown(
+            frontmatter=EntityFrontmatter(
+                metadata={
+                    "type": "conversation",
+                    "title": name,
+                    "created": created_at,
+                    "modified": modified_at,
+                    "permalink": permalink,
+                }
+            ),
+            content=content,
+        )
+
+        return entity
+
+    def _format_chat_markdown(
+        self,
+        name: str,
+        messages: List[Dict[str, Any]],
+        created_at: str,
+        modified_at: str,
+        permalink: str,
+    ) -> str:
+        """Format chat as clean markdown.
+
+        Args:
+            name: Chat name.
+            messages: List of chat messages.
+            created_at: Creation timestamp.
+            modified_at: Modification timestamp.
+            permalink: Permalink for the entity.
+
+        Returns:
+            Formatted markdown content.
+        """
+        # Start with frontmatter and title
+        lines = [
+            f"# {name}\n",
+        ]
+
+        # Add messages
+        for msg in messages:
+            # Format timestamp
+            ts = format_timestamp(msg["created_at"])
+
+            # Add message header
+            lines.append(f"### {msg['sender'].title()} ({ts})")
+
+            # Handle message content
+            content = msg.get("text", "")
+            if msg.get("content"):
+                content = " ".join(c.get("text", "") for c in msg["content"])
+            lines.append(content)
+
+            # Handle attachments
+            attachments = msg.get("attachments", [])
+            for attachment in attachments:
+                if "file_name" in attachment:
+                    lines.append(f"\n**Attachment: {attachment['file_name']}**")
+                    if "extracted_content" in attachment:
+                        lines.append("```")
+                        lines.append(attachment["extracted_content"])
+                        lines.append("```")
+
+            # Add spacing between messages
+            lines.append("")
+
+        return "\n".join(lines)
--- a/Show More
+++ b/Show More